BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576652.2.4
(870 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF230499.1|CF230499 PtaC0009B1B0103 Poplar cDNA library ... 186 1e-045
gb|CX656534.1|CX656534 PO01001H06 Poplar SC cDNA library Po... 186 1e-045
gb|CX659830.1|CX659830 PO01014F08 Poplar SC cDNA library Po... 186 1e-045
gb|CV248165.1|CV248165 WS0112.B21_K08 PT-P-FL-A-2 Populus t... 178 2e-043
gb|CV280249.1|CV280249 WS0135.B21_I10 PTxD-IL-FL-A-4 Populu... 178 2e-043
gb|DT495186.1|DT495186 WS0112.BR_K08 PT-P-FL-A-2 Populus tr... 178 2e-043
gb|DT503117.1|DT503117 WS0135.BR_I10 PTxD-IL-FL-A-4 Populus... 178 2e-043
gb|BU867813.1|BU867813 M104F09 Populus flower cDNA library ... 170 6e-041
gb|CA927691.1|CA927691 MTU6TR.P11.H03 Aspen root cDNA Libra... 170 6e-041
gb|CF936266.1|CF936266 PO3003H11 Populus tomentiglandulosa ... 170 6e-041
gb|CF936786.1|CF936786 PO3010C06 Populus tomentiglandulosa ... 170 6e-041
gb|CF936909.1|CF936909 PO3011H07 Populus tomentiglandulosa ... 170 6e-041
gb|DT498845.1|DT498845 WS0116.BR_I10 PT-P-FL-A-2 Populus tr... 170 6e-041
gb|BU868261.1|BU868261 M113C06 Populus flower cDNA library ... 163 1e-038
gb|CA930004.1|CA930004 MTU2CA.P5.G10 Aspen apex cDNA Librar... 163 1e-038
gb|CV237475.1|CV237475 WS01227.B21_J17 PT-GT-FL-A-3 Populus... 163 1e-038
gb|CX169168.1|CX169168 G01_69-98_13.ab1 leaf inoculated wit... 163 1e-038
gb|DT472727.1|DT472727 WS01227.BR.1_J17 PT-GT-FL-A-3 Populu... 163 1e-038
gb|DT477434.1|DT477434 WS02519.BR_O22 PT-MB-N-A-15 Populus ... 163 1e-038
gb|DT482477.1|DT482477 WS02519.B21_O22 PT-MB-N-A-15 Populus... 163 1e-038
gb|DT526178.1|DT526178 WS02047.C21_F08 PTxN-IB-N-A-11 Popul... 155 3e-036
gb|DT522032.1|DT522032 WS02035.B21_N23 PTxN-IB-N-A-11 Popul... 151 5e-035
gb|CK099644.1|CK099644 A079P11.5pR Hybrid aspen plasmid lib... 147 8e-034
gb|CV260260.1|CV260260 WS02013.B21_J12 PTxN-IB-N-A-11 Popul... 145 3e-033
gb|CK092595.1|CK092595 G088P73.3pR Populus tension wood cDN... 137 8e-031
gb|DT499856.1|DT499856 WS9991.BR_I17 PT-P-FL-A-2 Populus tr... 111 5e-023
gb|AI165230.1|AI165230 A079P11U Hybrid aspen plasmid librar... 100 2e-019
gb|CV267552.1|CV267552 WS02032.B21_A22 PTxN-IB-N-A-11 Popul... 66 2e-009
gb|CV226677.1|CV226677 WS0164.B21_P10 PT-DX-A-7 Populus tri... 48 6e-004
gb|CV254802.1|CV254802 WS02411.B21_D15 PTxD-ICC-N-A-14 Popu... 44 0.009
gb|DT520738.1|DT520738 WS02448.B21_G12 PTxD-ICC-N-A-14 Popu... 44 0.009
gb|CV252086.1|CV252086 WS0119.B21_F18 PT-P-FL-A-2 Populus t... 42 0.035
>gb|CF230499.1|CF230499 PtaC0009B1B0103 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 748
Score = 186 bits (94), Expect = 1e-045
Identities = 211/250 (84%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| || ||||||||||| || || ||||||||||| |||| ||||| |||
Sbjct: 197 gttctctctggaagtatggaacctggcttcaagaggggtgatattttgttcttgcacatg 256
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||| ||||||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 257 agtaaagatcctatttgcacaggagaaattgttgtttttaatgttgatggtcgtgaaatt 316
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
||||||||||| || || ||||||||||||||| | || || |||| ||||| || ||
Sbjct: 317 ccaattgtccatcgtgtgattaaggtccatgaaaggcaagatactggggaagttgatgtc 376
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| |||||||||| | || |||||||| || |||||||||
Sbjct: 377 ctcacaaaaggagataacaattatggggatgacaggcttttatatgctcaagggcagctt 436
Query: 258 tggctccagc 267
||||| ||||
Sbjct: 437 tggcttcagc 446
>gb|CX656534.1|CX656534 PO01001H06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01001H06 5', mRNA sequence
Length = 717
Score = 186 bits (94), Expect = 1e-045
Identities = 211/250 (84%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| || ||||||||||| || || |||||||| || |||| ||||| |||
Sbjct: 227 gttctctctggaagtatggaacctggcttcaagaggggtgacattttgttcttgcacatg 286
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||||||||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 287 agtaaagatcctattcgcacaggagaaattgttgtttttaatgttgatggtcgtgaaatt 346
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
||||||||||| || || ||||||||||||||| | || || |||| ||||| || ||
Sbjct: 347 ccaattgtccatcgtgtgattaaggtccatgaaaggcaagatactggggaagttgatgtc 406
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| |||||||||| | || |||||||| || |||||||||
Sbjct: 407 ctcacaaaaggagataacaattatggggatgacaggcttttatatgcccaagggcagctt 466
Query: 258 tggctccagc 267
||||| ||||
Sbjct: 467 tggcttcagc 476
>gb|CX659830.1|CX659830 PO01014F08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01014F08 5', mRNA sequence
Length = 694
Score = 186 bits (94), Expect = 1e-045
Identities = 211/250 (84%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| || ||||||||||| || || |||||||| || |||| ||||| |||
Sbjct: 160 gttctctctggaagtatggaacctggcttcaagaggggtgacattttgttcttgcacatg 219
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|||||||||||||||||| |||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 220 agcaaagatcctattcgctcaggagaaattgttgtttttaatgttgatggtcgtgaaatt 279
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
||||||||||| || || ||||||||||||||| | || || |||| ||||| || ||
Sbjct: 280 ccaattgtccatcgtgtgattaaggtccatgaaaggcaagatactggggaagttgatgtc 339
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| |||||||||| | || |||||||| || |||||||||
Sbjct: 340 ctcacaaaaggagataacaattatggggatgacaggcttttatatgctcaagggcagctt 399
Query: 258 tggctccagc 267
||||| ||||
Sbjct: 400 tggcttcagc 409
>gb|CV248165.1|CV248165 WS0112.B21_K08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0112_K08 3', mRNA sequence
Length = 714
Score = 178 bits (90), Expect = 2e-043
Identities = 210/250 (84%)
Strand = Plus / Minus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| || ||||||||||| || || |||||||| || |||| ||||| |||
Sbjct: 543 gttctctctggaagtatggaacctggcttcaagaggggtgacattttgttcttgcacatg 484
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||||||||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 483 agtaaagatcctattcgcacaggagaaattgttgtttttaatgttgatggtcgtgaaatt 424
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
||||||||||| || || ||||||||||||||| | || || |||| ||||| || ||
Sbjct: 423 ccaattgtccatcgtgtgattaaggtccatgaaaggcaagatactggggaagttgatgtc 364
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| ||||||||| | || |||||||| || |||||||||
Sbjct: 363 ctcacaaaaggagataacaattatggggatgataggcttttatatgctcaagggcagctt 304
Query: 258 tggctccagc 267
||||| ||||
Sbjct: 303 tggcttcagc 294
>gb|CV280249.1|CV280249 WS0135.B21_I10 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_I10 3', mRNA sequence
Length = 873
Score = 178 bits (90), Expect = 2e-043
Identities = 210/250 (84%)
Strand = Plus / Minus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| || ||||||||||| || || |||||||| || |||| ||||| |||
Sbjct: 699 gttctctctggaagtatggaacctggcttcaagaggggtgacattttgttcttgcacatg 640
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| ||||||||||||||||||||||| || |||||||| ||| | ||||| |||||||||
Sbjct: 639 agtaaagatcctattcgcacaggagagattgttgtttttaatgttgatggtcgtgaaatt 580
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
||||||||||| || || ||||||||||||||| | || || |||| ||||| || ||
Sbjct: 579 ccaattgtccatcgtgtgattaaggtccatgaaaggcaagatactggggaagttgatgtc 520
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| |||||||||| | || |||||||| || |||||||||
Sbjct: 519 ctcacaaaaggagataacaattatggggatgacaggcttttatatgctcaagggcagctt 460
Query: 258 tggctccagc 267
||||| ||||
Sbjct: 459 tggcttcagc 450
>gb|DT495186.1|DT495186 WS0112.BR_K08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_K08
5', mRNA sequence
Length = 621
Score = 178 bits (90), Expect = 2e-043
Identities = 210/250 (84%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| || ||||||||||| || || |||||||| || |||| ||||| |||
Sbjct: 189 gttctctctggaagtatggaacctggcttcaagaggggtgacattttgttcttgcacatg 248
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||||||||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 249 agtaaagatcctattcgcacaggagaaattgttgtttttaatgttgatggtcgtgaaatt 308
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
||||||||||| || || ||||||||||||||| | || || |||| ||||| || ||
Sbjct: 309 ccaattgtccatcgtgtgattaaggtccatgaaaggcaagatactggggaagttgatgtc 368
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| ||||||||| | || |||||||| || |||||||||
Sbjct: 369 ctcacaaaaggagataacaattatggggatgataggcttttatatgctcaagggcagctt 428
Query: 258 tggctccagc 267
||||| ||||
Sbjct: 429 tggcttcagc 438
>gb|DT503117.1|DT503117 WS0135.BR_I10 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_I10 5', mRNA sequence
Length = 854
Score = 178 bits (90), Expect = 2e-043
Identities = 210/250 (84%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| || ||||||||||| || || |||||||| || |||| ||||| |||
Sbjct: 214 gttctctctggaagtatggaacctggcttcaagaggggtgacattttgttcttgcacatg 273
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| ||||||||||||||||||||||| || |||||||| ||| | ||||| |||||||||
Sbjct: 274 agtaaagatcctattcgcacaggagagattgttgtttttaatgttgatggtcgtgaaatt 333
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
||||||||||| || || ||||||||||||||| | || || |||| ||||| || ||
Sbjct: 334 ccaattgtccatcgtgtgattaaggtccatgaaaggcaagatactggggaagttgatgtc 393
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| |||||||||| | || |||||||| || |||||||||
Sbjct: 394 ctcacaaaaggagataacaattatggggatgacaggcttttatatgctcaagggcagctt 453
Query: 258 tggctccagc 267
||||| ||||
Sbjct: 454 tggcttcagc 463
>gb|BU867813.1|BU867813 M104F09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 694
Score = 170 bits (86), Expect = 6e-041
Identities = 221/266 (83%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || || |||||||| || |||||||||| |||
Sbjct: 221 gttctttctggaagtatggaacctggcttcaagaggggtgacattttgtttttgcacatg 280
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||| |||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 281 agtaaagatcctattcgtgcaggagaaattgttgtttttaatgttgatggtcgtgaaatt 340
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
|||||||| || || |||||||||||||||||| | || || |||| ||||| || ||
Sbjct: 341 ccaattgttcatcgtgtaattaaggtccatgaaaggcaagatactggggaagttgatgtc 400
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || ||||||| |||||||||| | || || ||||| || ||||||||
Sbjct: 401 ctcacaaaaggagataataattatggggatgacaggcttttgtatgcgcaagggcagctc 460
Query: 258 tggctccagcaacatcacattatggg 283
||||| |||| |||||||| |||||
Sbjct: 461 tggcttcagcggcatcacatcatggg 486
>gb|CA927691.1|CA927691 MTU6TR.P11.H03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 586
Score = 170 bits (86), Expect = 6e-041
Identities = 210/250 (84%), Gaps = 1/250 (0%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| || ||||||||||| || || |||||||| || |||| ||||| |||
Sbjct: 162 gttctctctggaagtatggaacctggcttcaagaggggtgacattttgttcttgcacatg 221
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|||||||||||||||||| |||||||||| |||||||| ||| | ||| | |||||||||
Sbjct: 222 agcaaagatcctattcgctcaggagaaattgttgtttttaatgttgat-gtcgtgaaatt 280
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
||||||||||| || || ||||||||||||||| | || || |||| ||||| || ||
Sbjct: 281 ccaattgtccatcgtgtgattaaggtccatgaaaggcaagatactggggaagttgatgtc 340
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| |||||||||| | || |||||||| || |||||||||
Sbjct: 341 ctcacaaaaggagataacaattatggggatgacaggcttttatatgctcaagggcagctt 400
Query: 258 tggctccagc 267
||||| ||||
Sbjct: 401 tggcttcagc 410
>gb|CF936266.1|CF936266 PO3003H11 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 630
Score = 170 bits (86), Expect = 6e-041
Identities = 221/266 (83%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 40 gttctttctggaagtatggaacctggcttcaagaggggtgatattttgtttttgcatatg 99
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||| |||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 100 agtaaagatcctattcgtgcaggagaaattgttgtttttaatgttgatggtcgtgaaatt 159
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
|||||||| || || |||||||||||||||||| | || || |||| ||||| || ||
Sbjct: 160 ccaattgttcatcgtgtaattaaggtccatgaaaggcaagatactggggaagttgatgtc 219
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| ||||||||| | || || ||||| || ||||||||
Sbjct: 220 ctcacaaaaggagataacaattacggggatgacaggctcttgtatgctcaagggcagctc 279
Query: 258 tggctccagcaacatcacattatggg 283
||||| |||| |||||||| |||||
Sbjct: 280 tggcttcagcggcatcacatcatggg 305
>gb|CF936786.1|CF936786 PO3010C06 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 618
Score = 170 bits (86), Expect = 6e-041
Identities = 221/266 (83%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 40 gttctttctggaagtatggaacctggcttcaagaggggtgatattttgtttttgcatatg 99
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||| |||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 100 agtaaagatcctattcgtgcaggagaaattgttgtttttaatgttgatggtcgtgaaatt 159
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
|||||||| || || |||||||||||||||||| | || || |||| ||||| || ||
Sbjct: 160 ccaattgttcatcgtgtaattaaggtccatgaaaggcaagatactggggaagttgatgtc 219
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| ||||||||| | || || ||||| || ||||||||
Sbjct: 220 ctcacaaaaggagataacaattacggggatgacaggctcttgtatgctcaagggcagctc 279
Query: 258 tggctccagcaacatcacattatggg 283
||||| |||| |||||||| |||||
Sbjct: 280 tggcttcagcggcatcacatcatggg 305
>gb|CF936909.1|CF936909 PO3011H07 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 643
Score = 170 bits (86), Expect = 6e-041
Identities = 221/266 (83%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 41 gttctttctggaagtatggaacctggcttcaagaggggtgatattttgtttttgcatatg 100
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||| |||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 101 agtaaagatcctattcgtgcaggagaaattgttgtttttaatgttgatggtcgtgaaatt 160
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
|||||||| || || |||||||||||||||||| | || || |||| ||||| || ||
Sbjct: 161 ccaattgttcatcgtgtaattaaggtccatgaaaggcaagatactggggaagttgatgtc 220
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| ||||||||| | || || ||||| || ||||||||
Sbjct: 221 ctcacaaaaggagataacaattacggggatgacaggctcttgtatgctcaagggcagctc 280
Query: 258 tggctccagcaacatcacattatggg 283
||||| |||| |||||||| |||||
Sbjct: 281 tggcttcagcggcatcacatcatggg 306
>gb|DT498845.1|DT498845 WS0116.BR_I10 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0116_I10
5', mRNA sequence
Length = 553
Score = 170 bits (86), Expect = 6e-041
Identities = 221/266 (83%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || || |||||||| || |||||||||| |||
Sbjct: 190 gttctttctggaagtatggaacctggcttcaagaggggtgacattttgtttttgcacatg 249
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||| |||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 250 agtaaagatcctattcgtgcaggagaaattgttgtttttaatgttgatggtcgtgaaatt 309
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
|||||||| || || |||||||||||||||||| | || || |||| ||||| || ||
Sbjct: 310 ccaattgttcatcgtgtaattaaggtccatgaaaggcaagatactggggaagttgatgtc 369
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || ||||||| |||||||||| | || || ||||| || ||||||||
Sbjct: 370 ctcacaaaaggagataataattatggggatgacaggcttttgtatgctcaagggcagctc 429
Query: 258 tggctccagcaacatcacattatggg 283
||||| |||| |||||||| |||||
Sbjct: 430 tggcttcagcggcatcacatcatggg 455
>gb|BU868261.1|BU868261 M113C06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 600
Score = 163 bits (82), Expect = 1e-038
Identities = 220/266 (82%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || || |||||||| || |||||||||| |||
Sbjct: 182 gttctttctggaagtatggaacctggcttcaagaggggtgacattttgtttttgcacatg 241
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||| |||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 242 agtaaagatcctattcgtgcaggagaaattgttgtttttaatgttgatggtcgtgaaatt 301
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
|||||||| || || |||||||||||||||||| | || || |||| ||||| || ||
Sbjct: 302 ccaattgttcatcgtgtaattaaggtccatgaaaggcaagatactggggaagttgatgtc 361
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| |||||||||| | || || ||||| || ||||||||
Sbjct: 362 ctcacaaaaggagataacaattatggggatgacaggcttttgtatgcgcaagggcagctc 421
Query: 258 tggctccagcaacatcacattatggg 283
||||| |||| |||||||| |||||
Sbjct: 422 tggcttcagcggcatcacatcatggg 447
>gb|CA930004.1|CA930004 MTU2CA.P5.G10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 578
Score = 163 bits (82), Expect = 1e-038
Identities = 208/250 (83%)
Strand = Plus / Minus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
|||||||||| || ||||||||||| || || |||||||| || |||| ||||| |||
Sbjct: 426 gttctctctgaaagtatggaacctggcttcaagaggggtgacattttgttcttgcacatg 367
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|||||||||||||||||| ||| |||||| |||||||| ||| | ||||| |||||||||
Sbjct: 366 agcaaagatcctattcgctcagaagaaattgttgtttttaatgttgatggtcgtgaaatt 307
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
||||||||||| || || ||||||||||||||| | | || |||| ||||| || ||
Sbjct: 306 ccaattgtccatcgtgtgattaaggtccatgaaaggctagatactggggaagttgatgtc 247
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| |||||||||| | || |||||||| || |||||||||
Sbjct: 246 ctcacaaaaggagataacaattatggggatgacaggcttttatatgctcaagggcagctt 187
Query: 258 tggctccagc 267
||||| ||||
Sbjct: 186 tggcttcagc 177
>gb|CV237475.1|CV237475 WS01227.B21_J17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_J17 3', mRNA sequence
Length = 799
Score = 163 bits (82), Expect = 1e-038
Identities = 220/266 (82%)
Strand = Plus / Minus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || || |||||||| || |||||||||| |||
Sbjct: 686 gttctttctggaagtatggaacctggcttcaagaggggtgacattttgtttttgcacatg 627
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||| |||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 626 agtaaagatcctattcgtgcaggagaaattgttgtttttaatgttgatggtcgtgaaatt 567
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
|||||||| || || |||||||||||||||||| | || || |||| ||||| || ||
Sbjct: 566 ccaattgttcatcgtgtaattaaggtccatgaaaggcaagatactggggaagttgatgtc 507
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| |||||||||| | || || ||||| || ||||||||
Sbjct: 506 ctcacaaaaggagataacaattatggggatgacaggcttttgtatgcgcaagggcagctc 447
Query: 258 tggctccagcaacatcacattatggg 283
||||| |||| |||||||| |||||
Sbjct: 446 tggcttcagcggcatcacatcatggg 421
>gb|CX169168.1|CX169168 G01_69-98_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 646
Score = 163 bits (82), Expect = 1e-038
Identities = 220/266 (82%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || || |||||||| || |||||||||| |||
Sbjct: 237 gttctttctggaagtatggaacctggcttcaagaggggtgacattttgtttttgcacatg 296
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||| |||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 297 agtaaagatcctattcgtgcaggagaaattgttgtttttaatgttgatggtcgtgaaatt 356
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
|||||||| || || |||||||||||||||||| | || || |||| ||||| || ||
Sbjct: 357 ccaattgttcatcgtgtaattaaggtccatgaaaggcaagatactggggaagttgatgtc 416
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| |||||||||| | || || ||||| || ||||||||
Sbjct: 417 ctcacaaaaggagataacaattatggggatgacaggcttttgtatgctcaagggcagctc 476
Query: 258 tggctccagcaacatcacattatggg 283
||||| |||| |||||||| |||||
Sbjct: 477 tggcttcagcggcatcacatcatggg 502
>gb|DT472727.1|DT472727 WS01227.BR.1_J17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_J17 5', mRNA sequence
Length = 839
Score = 163 bits (82), Expect = 1e-038
Identities = 220/266 (82%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || || |||||||| || |||||||||| |||
Sbjct: 237 gttctttctggaagtatggaacctggcttcaagaggggtgacattttgtttttgcacatg 296
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||| |||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 297 agtaaagatcctattcgtgcaggagaaattgttgtttttaatgttgatggtcgtgaaatt 356
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
|||||||| || || |||||||||||||||||| | || || |||| ||||| || ||
Sbjct: 357 ccaattgttcatcgtgtaattaaggtccatgaaaggcaagatactggggaagttgatgtc 416
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| |||||||||| | || || ||||| || ||||||||
Sbjct: 417 ctcacaaaaggagataacaattatggggatgacaggcttttgtatgcgcaagggcagctc 476
Query: 258 tggctccagcaacatcacattatggg 283
||||| |||| |||||||| |||||
Sbjct: 477 tggcttcagcggcatcacatcatggg 502
>gb|DT477434.1|DT477434 WS02519.BR_O22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_O22 5', mRNA sequence
Length = 678
Score = 163 bits (82), Expect = 1e-038
Identities = 220/266 (82%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || || |||||||| || |||||||||| |||
Sbjct: 169 gttctttctggaagtatggaacctggcttcaagaggggtgacattttgtttttgcacatg 228
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||| |||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 229 agtaaagatcctattcgtgcaggagaaattgttgtttttaatgttgatggtcgtgaaatt 288
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
|||||||| || || |||||||||||||||||| | || || |||| ||||| || ||
Sbjct: 289 ccaattgttcatcgtgtaattaaggtccatgaaaggcaagatactggggaagttgatgtc 348
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| |||||||||| | || || ||||| || ||||||||
Sbjct: 349 ctcacaaaaggagataacaattatggggatgacaggcttttgtatgcgcaagggcagctc 408
Query: 258 tggctccagcaacatcacattatggg 283
||||| |||| |||||||| |||||
Sbjct: 409 tggcttcagcggcatcacatcatggg 434
>gb|DT482477.1|DT482477 WS02519.B21_O22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_O22 3', mRNA sequence
Length = 795
Score = 163 bits (82), Expect = 1e-038
Identities = 220/266 (82%)
Strand = Plus / Minus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || || |||||||| || |||||||||| |||
Sbjct: 705 gttctttctggaagtatggaacctggcttcaagaggggtgacattttgtttttgcacatg 646
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||| |||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 645 agtaaagatcctattcgtgcaggagaaattgttgtttttaatgttgatggtcgtgaaatt 586
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
|||||||| || || |||||||||||||||||| | || || |||| ||||| || ||
Sbjct: 585 ccaattgttcatcgtgtaattaaggtccatgaaaggcaagatactggggaagttgatgtc 526
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| |||||||||| | || || ||||| || ||||||||
Sbjct: 525 ctcacaaaaggagataacaattatggggatgacaggcttttgtatgcgcaagggcagctc 466
Query: 258 tggctccagcaacatcacattatggg 283
||||| |||| |||||||| |||||
Sbjct: 465 tggcttcagcggcatcacatcatggg 440
>gb|DT526178.1|DT526178 WS02047.C21_F08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02047_F08 3', mRNA sequence
Length = 682
Score = 155 bits (78), Expect = 3e-036
Identities = 219/266 (82%)
Strand = Plus / Minus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || || |||||||| || |||||||||| |||
Sbjct: 612 gttctttctggaagtatggaacctggcttcaagaggggtgacattttgtttttgcacatg 553
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||| |||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 552 agtaaagatcctattcgtgcaggagaaattgttgtttttaatgttgatggtcgtgaaatt 493
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
|||||||| || || |||||||||||||||||| | || || |||| ||||| || ||
Sbjct: 492 ccaattgttcatcgtgtaattaaggtccatgaaaggcaagatactggggaagttgatgtc 433
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| |||||||||| | || || ||||| || ||||||||
Sbjct: 432 ctcacaaaaggagataacaattatggggatgacaggcttttgtatgctcaagggcagctc 373
Query: 258 tggctccagcaacatcacattatggg 283
||| | |||| |||||||| |||||
Sbjct: 372 tggtttcagcggcatcacatcatggg 347
>gb|DT522032.1|DT522032 WS02035.B21_N23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02035_N23 3', mRNA sequence
Length = 890
Score = 151 bits (76), Expect = 5e-035
Identities = 172/204 (84%)
Strand = Plus / Minus
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
|||| ||||| ||||| |||||||||||||||||||||||||| |||||||| ||| | |
Sbjct: 664 tgttcttgcacatgagtaaagatcctattcgcacaggagaaattgttgtttttaatgttg 605
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactg 183
|||| |||||||||||||||||||| || || ||||||||||||||| | || || ||||
Sbjct: 604 atggtcgtgaaattccaattgtccatcgtgtgattaaggtccatgaaaggcaagatactg 545
Query: 184 cagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatg 243
||||| || ||||||| ||||| || || |||| ||||||||| | || |||||||
Sbjct: 544 gggaagttgatgtcctcacaaaaggagataacaattatggggatgataggcttttatatg 485
Query: 244 cacatgggcagctttggctccagc 267
| || |||||||||||||| ||||
Sbjct: 484 ctcaagggcagctttggcttcagc 461
>gb|CK099644.1|CK099644 A079P11.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A079P11 5', mRNA sequence
Length = 440
Score = 147 bits (74), Expect = 8e-034
Identities = 219/266 (82%), Gaps = 1/266 (0%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || || |||||||| || |||||||||| |||
Sbjct: 176 gttctttctggaagtatggaacctggcttcaagaggggtgacattttgtttttgcacatg 235
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||| |||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 236 agtaaagatcctattcgtgcaggagaaattgttgtttt-aatgttgatggtcgtgaaatt 294
Query: 138 ccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatc 197
|||||||| || || |||||||||||||||||| | || || |||| ||||| || ||
Sbjct: 295 ccaattgttcatcgtgtaattaaggtccatgaaaggcaagatactggggaagttgatgtc 354
Query: 198 ctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctt 257
||||| ||||| || || |||| ||||||||| | || || ||||| || ||||||||
Sbjct: 355 ctcacaaaaggagataacaattacggggatgacaggctcttgtatgctcaagggcagctc 414
Query: 258 tggctccagcaacatcacattatggg 283
||||| |||| |||||||| |||||
Sbjct: 415 tggcttcagcggcatcacatcatggg 440
>gb|CV260260.1|CV260260 WS02013.B21_J12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02013_J12 3', mRNA sequence
Length = 692
Score = 145 bits (73), Expect = 3e-033
Identities = 193/233 (82%)
Strand = Plus / Minus
Query: 51 aggggtgatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagtt 110
|||||||| || |||||||||| ||||| |||||||||||||| |||||||||| |||
Sbjct: 680 aggggtgacattttgtttttgcacatgagtaaagatcctattcgtgcaggagaaattgtt 621
Query: 111 gttttcaatatcgatggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaa 170
||||| ||| | ||||| ||||||||||||||||| || || ||||||||||||||||||
Sbjct: 620 gtttttaatgttgatggtcgtgaaattccaattgttcatcgtgtaattaaggtccatgaa 561
Query: 171 cgtcaggacactgcagaagtggacatcctcaccaaaggtgacaataattttggggatgac 230
| || || |||| ||||| || ||||||| ||||| || || |||| ||||||||||
Sbjct: 560 aggcaagatactggggaagttgatgtcctcacaaaaggagataacaattatggggatgac 501
Query: 231 cgactattatatgcacatgggcagctttggctccagcaacatcacattatggg 283
| || || ||||| || |||||||| ||||| |||| |||||||| |||||
Sbjct: 500 aggcttttgtatgcgcaagggcagctctggcttcagcggcatcacatcatggg 448
>gb|CK092595.1|CK092595 G088P73.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G088P73 3', mRNA sequence
Length = 777
Score = 137 bits (69), Expect = 8e-031
Identities = 211/253 (83%), Gaps = 4/253 (1%)
Strand = Plus / Minus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| || ||||||||||| || || |||||||| || |||| ||||| |||
Sbjct: 688 gttctctctggaagtatggaacctggcttcaagaggggtgacattttgttcttgcacatg 629
Query: 78 a-gcaaagatcc-tattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaa 135
| | |||||||| |||| ||||||||||||| |||||||| ||| | ||||| |||||||
Sbjct: 628 aagtaaagatccctatt-gcacaggagaaattgttgtttttaatgttgatggtcgtgaaa 570
Query: 136 ttccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggaca 195
||||||||||||| || || ||||||||||||||| | || || |||| ||||| ||
Sbjct: 569 ttccaattgtccatcgtgtgattaaggtccatgaaaggcaagatactggggaagttgatg 510
Query: 196 t-cctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcag 254
| |||||| ||||| || || |||| |||||||||| |||| |||||||| || ||||||
Sbjct: 509 tccctcacaaaaggagataacaattatggggatgacagacttttatatgctcaagggcag 450
Query: 255 ctttggctccagc 267
|||||||| ||||
Sbjct: 449 ctttggcttcagc 437
>gb|DT499856.1|DT499856 WS9991.BR_I17 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0119_F18
5', mRNA sequence
Length = 411
Score = 111 bits (56), Expect = 5e-023
Identities = 110/128 (85%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || || |||||||| || |||||||||| |||
Sbjct: 272 gttctttctggaagtatggaacctggcttcaagaggggtgacattttgtttttgcacatg 331
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||| |||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 332 agtaaagatcctattcgtgcaggagaaattgttgtttttaatgttgatggtcgtgaaatt 391
Query: 138 ccaattgt 145
||||||||
Sbjct: 392 ccaattgt 399
>gb|AI165230.1|AI165230 A079P11U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 312
Score = 99.6 bits (50), Expect = 2e-019
Identities = 110/129 (85%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || || |||||||| || |||||||||| |||
Sbjct: 124 gttctttctggaagtatggaacctggcttcaagaggggtgacattttgtttttgcacatg 183
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| |||||||||||||| |||||||||| |||||||| ||| | ||||| || ||||||
Sbjct: 184 agtaaagatcctattcgtgcaggagaaattgttgtttttaatgttgatgg-cgngaaatt 242
Query: 138 ccaattgtc 146
|||||||||
Sbjct: 243 ccaattgtc 251
>gb|CV267552.1|CV267552 WS02032.B21_A22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02032_A22 3', mRNA sequence
Length = 932
Score = 65.9 bits (33), Expect = 2e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || || |||||||| || |||||||||| |||
Sbjct: 851 gttctttctggaagtatggaacctggcttcaagaggggtgacattttgtttttgcacatg 910
Query: 78 agcaaagatcctattcg 94
|| ||||||||||||||
Sbjct: 911 agtaaagatcctattcg 927
>gb|CV226677.1|CV226677 WS0164.B21_P10 PT-DX-A-7 Populus trichocarpa cDNA clone WS0164_P10
3', mRNA sequence
Length = 408
Score = 48.1 bits (24), Expect = 6e-004
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 196 tcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagc 255
||||||| ||||| || || |||| ||||||||| | || |||||||| || |||||||
Sbjct: 32 tcctcacaaaaggagataacaattatggggatgataggcttttatatgctcaagggcagc 91
Query: 256 tttggctccagc 267
||||||| ||||
Sbjct: 92 tttggcttcagc 103
>gb|CV254802.1|CV254802 WS02411.B21_D15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02411_D15 3', mRNA sequence
Length = 894
Score = 44.1 bits (22), Expect = 0.009
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 9 gttgtagtggttctctctggtagcatggaacctg 42
||||| || ||||| |||||||||||||||||||
Sbjct: 696 gttgttgttgttctttctggtagcatggaacctg 663
>gb|DT520738.1|DT520738 WS02448.B21_G12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_G12 3', mRNA sequence
Length = 751
Score = 44.1 bits (22), Expect = 0.009
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 9 gttgtagtggttctctctggtagcatggaacctg 42
||||| || ||||| |||||||||||||||||||
Sbjct: 628 gttgttgttgttctttctggtagcatggaacctg 595
>gb|CV252086.1|CV252086 WS0119.B21_F18 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0119_F18 3', mRNA sequence
Length = 461
Score = 42.1 bits (21), Expect = 0.035
Identities = 114/145 (78%)
Strand = Plus / Minus
Query: 139 caattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatcc 198
||||||| || || |||||| ||||||||||| | || || ||| |||||||| |||
Sbjct: 461 caattgttcatcgtgtaattgaggtccatgaaaggcaagatcctggggaagtggatgtcc 402
Query: 199 tcaccaaaggtgacaataattttggggatgaccgactattatatgcacatgggcagcttt 258
|| | ||||| || ||||||| |||||||||| | || | ||||| || |||||||| |
Sbjct: 401 tctcaaaaggagataataattatggggatgacaggctttggtatgctcaagggcagctat 342
Query: 259 ggctccagcaacatcacattatggg 283
|| | |||| |||||||| |||||
Sbjct: 341 ggtttcagcggcatcacatcatggg 317
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 94,978
Number of Sequences: 369679
Number of extensions: 94978
Number of successful extensions: 24396
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24343
Number of HSP's gapped (non-prelim): 48
length of query: 870
length of database: 203,408,664
effective HSP length: 19
effective length of query: 851
effective length of database: 196,384,763
effective search space: 167123433313
effective search space used: 167123433313
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)