BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521569.2.1
(887 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK088529.1|CK088529 A057P60.3pR Hybrid aspen plasmid lib... 56 2e-006
gb|CK088740.1|CK088740 A068P68.3pR Hybrid aspen plasmid lib... 56 2e-006
gb|CK099233.1|CK099233 A057P60.5pR Hybrid aspen plasmid lib... 56 2e-006
gb|CN549510.1|CN549510 GQ0242.B3_N23 GQ024 Populus trichoca... 56 2e-006
gb|CN550319.1|CN550319 GQ0241.B3_E02 GQ024 Populus trichoca... 56 2e-006
gb|CV230711.1|CV230711 WS0192.B21_G13 PT-DX-N-A-10 Populus ... 56 2e-006
gb|AY919619.1| Populus trichocarpa class III HD-Zip protein... 54 9e-006
gb|BU813118.1|BU813118 N005E03 Populus bark cDNA library Po... 42 0.036
gb|CA929655.1|CA929655 MTU2CA.P16.G06 Aspen apex cDNA Libra... 42 0.036
gb|CK111810.1|CK111810 R023E10 Populus root cDNA library Po... 42 0.036
gb|CV248269.1|CV248269 WS01120.B21_A23 PT-P-FL-A-2 Populus ... 42 0.036
gb|CV261276.1|CV261276 WS02016.B21_F11 PTxN-IB-N-A-11 Popul... 42 0.036
gb|CX660056.1|CX660056 PO01017E03 Poplar SC cDNA library Po... 42 0.036
gb|AY497772.1| Populus alba x Populus tremula class III HD-... 42 0.036
gb|AY919616.1| Populus trichocarpa class III HD-Zip protein... 42 0.036
gb|AY919618.1| Populus trichocarpa class III HD-Zip protein... 42 0.036
gb|CV225958.1|CV225958 WS0162.B21_O01 PT-DX-A-7 Populus tri... 40 0.14
gb|DT470417.1|DT470417 WS01920.C21_M21 PT-DX-N-A-10 Populus... 40 0.14
gb|DT492719.1|DT492719 WS02552.C21_B19 PT-MB-N-A-15 Populus... 40 0.14
>gb|CK088529.1|CK088529 A057P60.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A057P60 3', mRNA sequence
Length = 539
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 206 acacgaaggaccagttcacgaacatgaaggcaaggcagtg 245
|||| ||||||||||||| |||||||||||| ||||||||
Sbjct: 231 acacaaaggaccagttcatgaacatgaaggccaggcagtg 270
>gb|CK088740.1|CK088740 A068P68.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A068P68 3', mRNA sequence
Length = 330
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 206 acacgaaggaccagttcacgaacatgaaggcaaggcagtg 245
|||| ||||||||||||| |||||||||||| ||||||||
Sbjct: 216 acacaaaggaccagttcatgaacatgaaggccaggcagtg 255
>gb|CK099233.1|CK099233 A057P60.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A057P60 5', mRNA sequence
Length = 594
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 206 acacgaaggaccagttcacgaacatgaaggcaaggcagtg 245
|||| ||||||||||||| |||||||||||| ||||||||
Sbjct: 496 acacaaaggaccagttcatgaacatgaaggccaggcagtg 457
>gb|CN549510.1|CN549510 GQ0242.B3_N23 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_N23 5', mRNA sequence
Length = 360
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 206 acacgaaggaccagttcacgaacatgaaggcaaggcagtg 245
|||| ||||||||||||| |||||||||||| ||||||||
Sbjct: 202 acacaaaggaccagttcatgaacatgaaggccaggcagtg 163
>gb|CN550319.1|CN550319 GQ0241.B3_E02 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_E02 5', mRNA sequence
Length = 816
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 206 acacgaaggaccagttcacgaacatgaaggcaaggcagtg 245
|||| ||||||||||||| |||||||||||| ||||||||
Sbjct: 671 acacaaaggaccagttcatgaacatgaaggccaggcagtg 632
>gb|CV230711.1|CV230711 WS0192.B21_G13 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0192_G13 3', mRNA sequence
Length = 351
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 206 acacgaaggaccagttcacgaacatgaaggcaaggcagtg 245
|||| ||||||||||||| |||||||||||| ||||||||
Sbjct: 170 acacaaaggaccagttcatgaacatgaaggccaggcagtg 131
>gb|AY919619.1| Populus trichocarpa class III HD-Zip protein 4 (HB4) mRNA, complete
cds
Length = 2535
Score = 54.0 bits (27), Expect = 9e-006
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 211 aaggaccagttcacgaacatgaaggcaaggcagtg 245
||||||||||||| |||||||||||| ||||||||
Sbjct: 2528 aaggaccagttcatgaacatgaaggccaggcagtg 2494
>gb|BU813118.1|BU813118 N005E03 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 694
Score = 42.1 bits (21), Expect = 0.036
Identities = 57/69 (82%)
Strand = Plus / Minus
Query: 423 gatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccggcttggttggcaaa 482
|||||| |||||||| | || || |||||||||||||| || || || ||||| |||||
Sbjct: 547 gatgtcttggagagccactagagttgtctccagcatgtcaagtcctgcctggttagcaaa 488
Query: 483 ggtgaacac 491
| |||||||
Sbjct: 487 gatgaacac 479
Score = 42.1 bits (21), Expect = 0.036
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 798 gaactggaaagcaatggtcagcactgatc 826
||||||||||||||| |||| ||||||||
Sbjct: 171 gaactggaaagcaatagtcaacactgatc 143
>gb|CA929655.1|CA929655 MTU2CA.P16.G06 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.036
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 283 gcctgctcgtacgacaccggccgccccatgctcgacacaca 323
||||||||||| || ||||||| ||||||||| || |||||
Sbjct: 163 gcctgctcgtaggagaccggcctccccatgctggatacaca 203
>gb|CK111810.1|CK111810 R023E10 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R023E10 5', mRNA sequence
Length = 578
Score = 42.1 bits (21), Expect = 0.036
Identities = 57/69 (82%)
Strand = Plus / Minus
Query: 423 gatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccggcttggttggcaaa 482
|||||| |||||||| | || || |||||||||||||| || || || ||||| |||||
Sbjct: 540 gatgtcttggagagccactagagttgtctccagcatgtcaagtcctgcctggttagcaaa 481
Query: 483 ggtgaacac 491
| |||||||
Sbjct: 480 gatgaacac 472
Score = 42.1 bits (21), Expect = 0.036
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 798 gaactggaaagcaatggtcagcactgatc 826
||||||||||||||| |||| ||||||||
Sbjct: 165 gaactggaaagcaatagtcaacactgatc 137
>gb|CV248269.1|CV248269 WS01120.B21_A23 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A23 3', mRNA sequence
Length = 669
Score = 42.1 bits (21), Expect = 0.036
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 283 gcctgctcgtacgacaccggccgccccatgctcgacacaca 323
||||||||||| || ||||||| ||||||||| || |||||
Sbjct: 415 gcctgctcgtaggagaccggcctccccatgctggatacaca 455
>gb|CV261276.1|CV261276 WS02016.B21_F11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_F11 3', mRNA sequence
Length = 878
Score = 42.1 bits (21), Expect = 0.036
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 798 gaactggaaagcaatggtcagcactgatc 826
||||||||||||||| |||| ||||||||
Sbjct: 850 gaactggaaagcaatagtcaacactgatc 878
Score = 40.1 bits (20), Expect = 0.14
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 448 gtctccagcatgtccaggccggcttggttggcaaaggtgaacac 491
|||||||||||||| || || || ||||| |||||| |||||||
Sbjct: 500 gtctccagcatgtcaagtcctgcctggttagcaaagatgaacac 543
>gb|CX660056.1|CX660056 PO01017E03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01017E03 5', mRNA sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.036
Identities = 57/69 (82%)
Strand = Plus / Minus
Query: 423 gatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccggcttggttggcaaa 482
|||||| |||||||| | || || |||||||||||||| || || || ||||| |||||
Sbjct: 335 gatgtcttggagagccactagagttgtctccagcatgtcaagtcctgcctggttagcaaa 276
Query: 483 ggtgaacac 491
| |||||||
Sbjct: 275 gatgaacac 267
>gb|AY497772.1| Populus alba x Populus tremula class III HD-Zip protein (HB1) mRNA,
complete cds
Length = 2532
Score = 42.1 bits (21), Expect = 0.036
Identities = 57/69 (82%)
Strand = Plus / Minus
Query: 423 gatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccggcttggttggcaaa 482
|||||| |||||||| | || || |||||||||||||| || || || ||||| |||||
Sbjct: 2310 gatgtcttggagagccactagagttgtctccagcatgtcaagtcctgcctggttagcaaa 2251
Query: 483 ggtgaacac 491
| |||||||
Sbjct: 2250 gatgaacac 2242
Score = 42.1 bits (21), Expect = 0.036
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 798 gaactggaaagcaatggtcagcactgatc 826
||||||||||||||| |||| ||||||||
Sbjct: 1935 gaactggaaagcaatagtcaacactgatc 1907
>gb|AY919616.1| Populus trichocarpa class III HD-Zip protein 1 (HB1) mRNA, complete
cds
Length = 2568
Score = 42.1 bits (21), Expect = 0.036
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 798 gaactggaaagcaatggtcagcactgatc 826
||||||||||||||| |||| ||||||||
Sbjct: 1935 gaactggaaagcaatagtcaacactgatc 1907
Score = 40.1 bits (20), Expect = 0.14
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 448 gtctccagcatgtccaggccggcttggttggcaaaggtgaacac 491
|||||||||||||| || || || ||||| |||||| |||||||
Sbjct: 2312 gtctccagcatgtcaagtcctgcctggttagcaaagatgaacac 2269
>gb|AY919618.1| Populus trichocarpa class III HD-Zip protein 3 (HB3) mRNA, complete
cds
Length = 2532
Score = 42.1 bits (21), Expect = 0.036
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 283 gcctgctcgtacgacaccggccgccccatgctcgacacaca 323
||||||||||| || ||||||| ||||||||| || |||||
Sbjct: 2453 gcctgctcgtaggagaccggcctccccatgctggatacaca 2413
>gb|CV225958.1|CV225958 WS0162.B21_O01 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_O01
3', mRNA sequence
Length = 701
Score = 40.1 bits (20), Expect = 0.14
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 448 gtctccagcatgtccaggccggcttggttggcaaaggtgaacac 491
|||||||||||||| || || || ||||| |||||| |||||||
Sbjct: 499 gtctccagcatgtcaagtcctgcctggttagcaaagatgaacac 542
>gb|DT470417.1|DT470417 WS01920.C21_M21 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01920_M21 3', mRNA sequence
Length = 841
Score = 40.1 bits (20), Expect = 0.14
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 448 gtctccagcatgtccaggccggcttggttggcaaaggtgaacac 491
|||||||||||||| || || || ||||| |||||| |||||||
Sbjct: 520 gtctccagcatgtcaagtcctgcctggttagcaaagatgaacac 563
>gb|DT492719.1|DT492719 WS02552.C21_B19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02552_B19 3', mRNA sequence
Length = 867
Score = 40.1 bits (20), Expect = 0.14
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 448 gtctccagcatgtccaggccggcttggttggcaaaggtgaacac 491
|||||||||||||| || || || ||||| |||||| |||||||
Sbjct: 505 gtctccagcatgtcaagtcctgcctggttagcaaagatgaacac 548
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,871
Number of Sequences: 369679
Number of extensions: 68871
Number of successful extensions: 18438
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18396
Number of HSP's gapped (non-prelim): 42
length of query: 887
length of database: 203,408,664
effective HSP length: 19
effective length of query: 868
effective length of database: 196,384,763
effective search space: 170461974284
effective search space used: 170461974284
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)