BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2521556.2.1
         (1267 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DT525837.1|DT525837  WS02046.C21_G19 PTxN-IB-N-A-11 Popul...    44   0.013
gb|BU822483.1|BU822483  UB38BPC12 Populus tremula cambium cD...    42   0.051
gb|BU863136.1|BU863136  S024D12 Populus imbibed seed cDNA li...    42   0.051
gb|BU864516.1|BU864516  S041E10 Populus imbibed seed cDNA li...    42   0.051
gb|BU864917.1|BU864917  S046F02 Populus imbibed seed cDNA li...    42   0.051
gb|CK106904.1|CK106904  UB38BPC12.5pR Populus active cambium...    42   0.051
gb|CV256308.1|CV256308  WS0243.B21_I01 PTxD-ICC-N-A-14 Popul...    42   0.051
gb|CV275477.1|CV275477  WS0176.B21_J12 PTxD-NR-A-8 Populus t...    42   0.051

>gb|DT525837.1|DT525837 WS02046.C21_G19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS02046_G19 3', mRNA sequence
          Length = 856

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 219 acaaccccgtccacaagaaggtgcccgtgctcgtccac 256
           |||||||  ||||||||||||| |||||||| ||||||
Sbjct: 778 acaaccctatccacaagaaggttcccgtgcttgtccac 741



>gb|BU822483.1|BU822483 UB38BPC12 Populus tremula cambium cDNA library Populus tremula cDNA
           5 prime, mRNA sequence
          Length = 243

 Score = 42.1 bits (21), Expect = 0.051
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 228 tccacaagaaggtgcccgtgctcgtccac 256
           ||||||||||||| |||||||| ||||||
Sbjct: 64  tccacaagaaggttcccgtgcttgtccac 92



>gb|BU863136.1|BU863136 S024D12 Populus imbibed seed cDNA library Populus tremula cDNA 5
           prime, mRNA sequence
          Length = 559

 Score = 42.1 bits (21), Expect = 0.051
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 228 tccacaagaaggtgcccgtgctcgtccac 256
           ||||||||||||| |||||||| ||||||
Sbjct: 138 tccacaagaaggttcccgtgcttgtccac 166



>gb|BU864516.1|BU864516 S041E10 Populus imbibed seed cDNA library Populus tremula cDNA 5
           prime, mRNA sequence
          Length = 271

 Score = 42.1 bits (21), Expect = 0.051
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 228 tccacaagaaggtgcccgtgctcgtccac 256
           ||||||||||||| |||||||| ||||||
Sbjct: 162 tccacaagaaggttcccgtgcttgtccac 190



>gb|BU864917.1|BU864917 S046F02 Populus imbibed seed cDNA library Populus tremula cDNA 5
           prime, mRNA sequence
          Length = 522

 Score = 42.1 bits (21), Expect = 0.051
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 228 tccacaagaaggtgcccgtgctcgtccac 256
           ||||||||||||| |||||||| ||||||
Sbjct: 145 tccacaagaaggttcccgtgcttgtccac 173



>gb|CK106904.1|CK106904 UB38BPC12.5pR Populus active cambium cDNA library Populus tremula
           cDNA clone UB38BPC12 5', mRNA sequence
          Length = 618

 Score = 42.1 bits (21), Expect = 0.051
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 228 tccacaagaaggtgcccgtgctcgtccac 256
           ||||||||||||| |||||||| ||||||
Sbjct: 52  tccacaagaaggttcccgtgcttgtccac 80



>gb|CV256308.1|CV256308 WS0243.B21_I01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS0243_I01 3', mRNA sequence
          Length = 823

 Score = 42.1 bits (21), Expect = 0.051
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 228 tccacaagaaggtgcccgtgctcgtccac 256
           ||||||||||||| |||||||| ||||||
Sbjct: 767 tccacaagaaggttcccgtgcttgtccac 739



>gb|CV275477.1|CV275477 WS0176.B21_J12 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
           cDNA clone WS0176_J12 3', mRNA sequence
          Length = 791

 Score = 42.1 bits (21), Expect = 0.051
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 228 tccacaagaaggtgcccgtgctcgtccac 256
           ||||||||||||| |||||||| ||||||
Sbjct: 666 tccacaagaaggttcccgtgcttgtccac 638



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,272
Number of Sequences: 369679
Number of extensions: 73272
Number of successful extensions: 16157
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16149
Number of HSP's gapped (non-prelim): 8
length of query: 1267
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1248
effective length of database: 196,384,763
effective search space: 245088184224
effective search space used: 245088184224
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)