BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.4
(760 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV274873.1|CV274873 WS0174.B21.1_K13 PTxD-NR-A-8 Populus... 58 5e-007
gb|DT520673.1|DT520673 WS02448.B21_D13 PTxD-ICC-N-A-14 Popu... 58 5e-007
gb|CN523137.1|CN523137 GQ015M01.B3_L24 GQ015 Populus tricho... 56 2e-006
gb|CX170277.1|CX170277 G05_69-3_13.ab1 leaf inoculated with... 56 2e-006
gb|CX173013.1|CX173013 G02_69-27_14.ab1 leaf inoculated wit... 56 2e-006
gb|CN549936.1|CN549936 GQ0243.B3_L22 GQ024 Populus trichoca... 48 5e-004
gb|CV257819.1|CV257819 WS0247.B21_L22 PTxD-ICC-N-A-14 Popul... 48 5e-004
gb|CN520070.1|CN520070 GQ0107.B3_A09 GQ010 Populus trichoca... 46 0.002
gb|BU825300.1|BU825300 UK107TB04 Populus apical shoot cDNA ... 40 0.12
gb|BU825516.1|BU825516 UK109TG01 Populus apical shoot cDNA ... 40 0.12
gb|BU827206.1|BU827206 UK129TG02 Populus apical shoot cDNA ... 40 0.12
gb|CN519106.1|CN519106 GQ0102.B3_I15 GQ010 Populus trichoca... 40 0.12
gb|CX168972.1|CX168972 A04_69-41_02.ab1 leaf inoculated wit... 40 0.12
gb|DN490440.1|DN490440 UK129TG02.3pR Populus apical shoot c... 40 0.12
gb|DN500410.1|DN500410 UK129TG02.5pR Populus apical shoot c... 40 0.12
gb|BU895258.1|BU895258 X021D11 Populus wood cDNA library Po... 38 0.47
gb|DN492463.1|DN492463 X021D11.3pR Populus wood cDNA librar... 38 0.47
gb|DN502505.1|DN502505 X021D11.5pR Populus wood cDNA librar... 38 0.47
>gb|CV274873.1|CV274873 WS0174.B21.1_K13 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0174_K13 3', mRNA sequence
Length = 885
Score = 58.0 bits (29), Expect = 5e-007
Identities = 235/301 (78%), Gaps = 2/301 (0%)
Strand = Plus / Plus
Query: 454 gcctctgccacaaacttcccatagtggatccttctggagagtgcctgcaagcaggttgtg 513
|||||||| ||||| | ||||| ||||| ||| | ||||| ||||| | ||| |||||
Sbjct: 584 gcctctgctacaaattctccataatggattctttttgagagagcctgtagacagattgtg 643
Query: 514 tcacaaagagcactggatccagcattaccatcacttccttctttcaccaatcttggaaga 573
||||||| ||| | |||||| ||| |||||| ||||||||| |||||||| |||| |
Sbjct: 644 tcacaaacagctgttgatccacaattgccatcatctccttctttgaccaatctaggaata 703
Query: 574 agttcatcaaaatacattttccaaatctct-ttgttgatattgatagaatcagcaatggg 632
||||| ||||||||| | ||| | || | || || ||||| || ||||||||||||||
Sbjct: 704 agttctctaaaatacatgtcccata-ctgtcttatttatatttattgaatcagcaatggg 762
Query: 633 atgcaaaacccttgggtattgcataggtggcaaccggggctcaggcagatccttggaaaa 692
||| | ||| |||||| |||| ||||||||| |||||||| | || | | ||
Sbjct: 763 atgtagtacctgtgggtactgcaagggtggcaacaccggctcaggtaagtcatcagggaa 822
Query: 693 gaaagggtgctcatctgggcccttgtatctcccaacctgtgcatggagcttttcagtttc 752
||||| || ||||| |||| ||||||||| |||| ||| ||||| ||||||||||||||
Sbjct: 823 aaaaggatgttcatcagggctcttgtatctgccaagctgagcatgtagcttttcagtttc 882
Query: 753 c 753
|
Sbjct: 883 c 883
>gb|DT520673.1|DT520673 WS02448.B21_D13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_D13 3', mRNA sequence
Length = 897
Score = 58.0 bits (29), Expect = 5e-007
Identities = 235/301 (78%), Gaps = 2/301 (0%)
Strand = Plus / Plus
Query: 454 gcctctgccacaaacttcccatagtggatccttctggagagtgcctgcaagcaggttgtg 513
|||||||| ||||| | ||||| ||||| ||| | ||||| ||||| | ||| |||||
Sbjct: 503 gcctctgctacaaattctccataatggattctttttgagagagcctgtagacagattgtg 562
Query: 514 tcacaaagagcactggatccagcattaccatcacttccttctttcaccaatcttggaaga 573
||||||| ||| | |||||| ||| |||||| ||||||||| |||||||| |||| |
Sbjct: 563 tcacaaacagctgttgatccacaattgccatcatctccttctttgaccaatctaggaata 622
Query: 574 agttcatcaaaatacattttccaaatctct-ttgttgatattgatagaatcagcaatggg 632
||||| ||||||||| | ||| | || | || || ||||| || ||||||||||||||
Sbjct: 623 agttctctaaaatacatgtcccata-ctgtcttatttatatttattgaatcagcaatggg 681
Query: 633 atgcaaaacccttgggtattgcataggtggcaaccggggctcaggcagatccttggaaaa 692
||| | ||| |||||| |||| ||||||||| |||||||| | || | | ||
Sbjct: 682 atgtagtacctgtgggtactgcaagggtggcaacactggctcaggtaagtcatccgggaa 741
Query: 693 gaaagggtgctcatctgggcccttgtatctcccaacctgtgcatggagcttttcagtttc 752
||||| || ||||| |||| ||||||||| |||| ||| ||||| ||||||||||||||
Sbjct: 742 aaaaggatgttcatcagggctcttgtatctgccaagctgagcatgtagcttttcagtttc 801
Query: 753 c 753
|
Sbjct: 802 c 802
>gb|CN523137.1|CN523137 GQ015M01.B3_L24 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M01_L24 5', mRNA sequence
Length = 785
Score = 56.0 bits (28), Expect = 2e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 694 aaagggtgctcatctgggcccttgtatctcccaacctgtgcatggagcttttcagtttcc 753
||||| || ||||| |||| ||||||||| |||| ||| ||||| |||||||||||||||
Sbjct: 146 aaaggatgttcatcagggctcttgtatctgccaagctgagcatgtagcttttcagtttcc 87
Score = 50.1 bits (25), Expect = 1e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 454 gcctctgccacaaacttcccatagtggatccttctggagagtgcctgcaagcaggttgtg 513
|||||||| ||||| | ||||| ||||| ||| | ||||| ||||| | ||| |||||
Sbjct: 386 gcctctgctacaaattctccataatggattctttttgagagagcctgtagacagattgtg 327
Query: 514 tcacaaagagcactggatccagcattaccatcacttccttctttcaccaatcttggaaga 573
||||||| ||| | |||||| ||| |||||| ||||||||| |||||||| |||| |
Sbjct: 326 tcacaaacagctgttgatccacaattgccatcatctccttctttgaccaatctaggaata 267
Query: 574 agttc 578
|||||
Sbjct: 266 agttc 262
>gb|CX170277.1|CX170277 G05_69-3_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 558
Score = 56.0 bits (28), Expect = 2e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 694 aaagggtgctcatctgggcccttgtatctcccaacctgtgcatggagcttttcagtttcc 753
||||| || ||||| |||| ||||||||| |||| ||| ||||| |||||||||||||||
Sbjct: 538 aaaggatgttcatcagggctcttgtatctgccaagctgagcatgtagcttttcagtttcc 479
>gb|CX173013.1|CX173013 G02_69-27_14.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 577
Score = 56.0 bits (28), Expect = 2e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 694 aaagggtgctcatctgggcccttgtatctcccaacctgtgcatggagcttttcagtttcc 753
||||| || ||||| |||| ||||||||| |||| ||| ||||| |||||||||||||||
Sbjct: 505 aaaggatgttcatcagggctcttgtatctgccaagctgagcatgtagcttttcagtttcc 446
>gb|CN549936.1|CN549936 GQ0243.B3_L22 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_L22 5', mRNA sequence
Length = 668
Score = 48.1 bits (24), Expect = 5e-004
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 560 ccaatcttggaagaagttcatcaaaatacattttccaaatctctttgttgatattgatag 619
||||| |||||||||| || ||||||||| ||||| | || |||||||||||| || |
Sbjct: 438 ccaattttggaagaagatccgtaaaatacatattccatacctttttgttgatattaattg 379
Query: 620 aatcagcaatgggatgcaaaacccttgg 647
| |||||| |||||||||||| ||||
Sbjct: 378 agtcagcacaaggatgcaaaacctttgg 351
>gb|CV257819.1|CV257819 WS0247.B21_L22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0247_L22 3', mRNA sequence
Length = 752
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 460 gccacaaacttcccatagtggatccttctggagagtgcctgcaagcag 507
|||||||||||||| || ||||| ||||| ||||| ||||| ||||||
Sbjct: 463 gccacaaacttcccgtaatggattcttctagagagggcctgtaagcag 510
>gb|CN520070.1|CN520070 GQ0107.B3_A09 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_A09 5', mRNA sequence
Length = 698
Score = 46.1 bits (23), Expect = 0.002
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 560 ccaatcttggaagaagttcatcaaaatacattttccaaatctctttgttgatattgatag 619
||||| |||||||||| || ||||||||| ||||| | || |||||||||||| || |
Sbjct: 197 ccaattttggaagaagatccgtaaaatacatattccatacctttttgttgatattaattg 138
Query: 620 aatcagcaatgggatgcaaaacc 642
| |||||| ||||||||||||
Sbjct: 137 agtcagcacaaggatgcaaaacc 115
>gb|BU825300.1|BU825300 UK107TB04 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 556
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 atgcttgtttgttggcacaa 59
||||||||||||||||||||
Sbjct: 335 atgcttgtttgttggcacaa 354
>gb|BU825516.1|BU825516 UK109TG01 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 616
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 atgcttgtttgttggcacaa 59
||||||||||||||||||||
Sbjct: 335 atgcttgtttgttggcacaa 354
>gb|BU827206.1|BU827206 UK129TG02 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 253
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 atgcttgtttgttggcacaa 59
||||||||||||||||||||
Sbjct: 155 atgcttgtttgttggcacaa 174
>gb|CN519106.1|CN519106 GQ0102.B3_I15 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0102_I15 5', mRNA sequence
Length = 558
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 atgcttgtttgttggcacaa 59
||||||||||||||||||||
Sbjct: 373 atgcttgtttgttggcacaa 392
>gb|CX168972.1|CX168972 A04_69-41_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 337
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 atgcttgtttgttggcacaa 59
||||||||||||||||||||
Sbjct: 224 atgcttgtttgttggcacaa 243
>gb|DN490440.1|DN490440 UK129TG02.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone UK129TG02 3', mRNA
sequence
Length = 615
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 40 atgcttgtttgttggcacaa 59
||||||||||||||||||||
Sbjct: 269 atgcttgtttgttggcacaa 250
>gb|DN500410.1|DN500410 UK129TG02.5pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone UK129TG02 5', mRNA
sequence
Length = 607
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 atgcttgtttgttggcacaa 59
||||||||||||||||||||
Sbjct: 335 atgcttgtttgttggcacaa 354
>gb|BU895258.1|BU895258 X021D11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 718
Score = 38.2 bits (19), Expect = 0.47
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 727 acctgtgcatggagcttttcagtttcc 753
||||| ||||| |||||||||||||||
Sbjct: 186 acctgagcatgtagcttttcagtttcc 160
>gb|DN492463.1|DN492463 X021D11.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X021D11 3', mRNA sequence
Length = 705
Score = 38.2 bits (19), Expect = 0.47
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 727 acctgtgcatggagcttttcagtttcc 753
||||| ||||| |||||||||||||||
Sbjct: 527 acctgagcatgtagcttttcagtttcc 553
>gb|DN502505.1|DN502505 X021D11.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X021D11 5', mRNA sequence
Length = 694
Score = 38.2 bits (19), Expect = 0.47
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 727 acctgtgcatggagcttttcagtttcc 753
||||| ||||| |||||||||||||||
Sbjct: 179 acctgagcatgtagcttttcagtttcc 153
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 93,407
Number of Sequences: 369679
Number of extensions: 93407
Number of successful extensions: 24335
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24306
Number of HSP's gapped (non-prelim): 29
length of query: 760
length of database: 203,408,664
effective HSP length: 19
effective length of query: 741
effective length of database: 196,384,763
effective search space: 145521109383
effective search space used: 145521109383
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)