BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493944.2.2
(2027 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU879414.1|BU879414 V059H01 Populus flower cDNA library ... 103 3e-020
gb|AY391776.1| Populus alba x Populus tremula putative inve... 70 4e-010
gb|BU820388.1|BU820388 UA54DPF07 Populus tremula cambium cD... 66 6e-009
gb|BU869595.1|BU869595 Q001H02 Populus flower cDNA library ... 66 6e-009
gb|BU871633.1|BU871633 Q032F11 Populus flower cDNA library ... 66 6e-009
gb|CK106113.1|CK106113 UA54DPF07.5pR Populus dormant cambiu... 62 9e-008
gb|DT500159.1|DT500159 PX0011.BR_G11 PT-X-FL-A-1 Populus tr... 58 1e-006
gb|AY190017.1| Populus tomentosa cell-wall invertase gene, ... 54 2e-005
gb|CX168427.1|CX168427 B06_69-85_04.ab1 leaf inoculated wit... 50 3e-004
gb|CX169703.1|CX169703 E01_69-117_09.ab1 leaf inoculated wi... 50 3e-004
gb|CA925615.1|CA925615 MTU7TL.P3.G07 Aspen leaf cDNA Librar... 46 0.005
gb|CA925485.1|CA925485 MTU7TL.P1.H09 Aspen leaf cDNA Librar... 42 0.082
gb|CA933578.1|CA933578 MTU5CS.P9.G08 Aspen stem cDNA Librar... 42 0.082
>gb|BU879414.1|BU879414 V059H01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 600
Score = 103 bits (52), Expect = 3e-020
Identities = 109/128 (85%)
Strand = Plus / Plus
Query: 202 gggtaccacttccagccccccaagaactggatcaatgatcccaacgcgcccatgtactac 261
||||| ||||||||||| || |||||||||||||| ||||| || | ||| ||||||||
Sbjct: 241 gggtatcacttccagcctcctaagaactggatcaacgatccaaatgggcctttgtactac 300
Query: 262 aaggggtggtaccatttcttctaccaatacaatcccaagggcgccgtatggggcaacatc 321
|||||| |||||| | |||||||||||||||||||| || ||||| |||||||||||
Sbjct: 301 aaggggctataccatctattctaccaatacaatcccaaaggtgccgtgtggggcaacatt 360
Query: 322 gtgtgggc 329
|| |||||
Sbjct: 361 gtctgggc 368
>gb|AY391776.1| Populus alba x Populus tremula putative invertase mRNA, partial cds
Length = 326
Score = 69.9 bits (35), Expect = 4e-010
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 227 actggatcaatgatcccaacgcgcccatgtactacaaggggtggtaccatttcttctacc 286
|||||||||| ||||| || | ||| |||||||||||||| |||||| | |||||||
Sbjct: 2 actggatcaacgatccaaatgggcctttgtactacaaggggctataccatctgttctacc 61
Query: 287 aatacaatcccaagggcgccgtatggggcaacatcgtgtgggc 329
| ||||||||||| || ||||| ||||||||||| || |||||
Sbjct: 62 agtacaatcccaaaggtgccgtgtggggcaacattgtctgggc 104
>gb|BU820388.1|BU820388 UA54DPF07 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 562
Score = 65.9 bits (33), Expect = 6e-009
Identities = 87/105 (82%)
Strand = Plus / Plus
Query: 225 gaactggatcaatgatcccaacgcgcccatgtactacaaggggtggtaccatttcttcta 284
|||||||||||| ||||| || || || ||||||||||||||| |||||| | |||||
Sbjct: 238 gaactggatcaacgatccaaatgcacctatgtactacaaggggctctaccatctattcta 297
Query: 285 ccaatacaatcccaagggcgccgtatggggcaacatcgtgtgggc 329
||||||||| ||||| || || || ||||| ||||| || |||||
Sbjct: 298 ccaatacaaccccaaaggtgcagtgtggggtaacattgtttgggc 342
>gb|BU869595.1|BU869595 Q001H02 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 608
Score = 65.9 bits (33), Expect = 6e-009
Identities = 87/105 (82%)
Strand = Plus / Plus
Query: 225 gaactggatcaatgatcccaacgcgcccatgtactacaaggggtggtaccatttcttcta 284
|||||||||||| ||||| || || || ||||||||||||||| |||||| | |||||
Sbjct: 238 gaactggatcaacgatccaaatgcacctatgtactacaaggggctctaccatctattcta 297
Query: 285 ccaatacaatcccaagggcgccgtatggggcaacatcgtgtgggc 329
||||||||| ||||| || || || ||||| ||||| || |||||
Sbjct: 298 ccaatacaaccccaaaggtgcagtgtggggtaacattgtttgggc 342
>gb|BU871633.1|BU871633 Q032F11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 589
Score = 65.9 bits (33), Expect = 6e-009
Identities = 87/105 (82%)
Strand = Plus / Plus
Query: 225 gaactggatcaatgatcccaacgcgcccatgtactacaaggggtggtaccatttcttcta 284
|||||||||||| ||||| || || || ||||||||||||||| |||||| | |||||
Sbjct: 238 gaactggatcaacgatccaaatgcacctatgtactacaaggggctctaccatctattcta 297
Query: 285 ccaatacaatcccaagggcgccgtatggggcaacatcgtgtgggc 329
||||||||| ||||| || || || ||||| ||||| || |||||
Sbjct: 298 ccaatacaaccccaaaggtgcagtgtggggtaacattgtttgggc 342
>gb|CK106113.1|CK106113 UA54DPF07.5pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA54DPF07 5', mRNA sequence
Length = 437
Score = 61.9 bits (31), Expect = 9e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 225 gaactggatcaatgatcccaacgcgcccatgtactacaaggggtggtaccatttcttcta 284
|||||||||||| ||||| || || || ||||||||||||||| |||||| | |||||
Sbjct: 247 gaactggatcaacgatccaaatgcacctatgtactacaaggggctctaccatctattcta 306
Query: 285 ccaatacaatcccaa 299
||||||||| |||||
Sbjct: 307 ccaatacaaccccaa 321
>gb|DT500159.1|DT500159 PX0011.BR_G11 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0011_G11
5', mRNA sequence
Length = 673
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 224 agaactggatcaatgatcccaacgcgcccatgtactacaaggggtggtaccatttcttct 283
|||| ||||| || |||||||||| || |||| ||||| || |||||||| |||||||
Sbjct: 170 agaattggatgaacgatcccaacggtccattgtattacaaaggctggtaccacttcttct 229
Query: 284 accaatacaatcc 296
|||||||||||||
Sbjct: 230 accaatacaatcc 242
>gb|AY190017.1| Populus tomentosa cell-wall invertase gene, partial cds
Length = 518
Score = 54.0 bits (27), Expect = 2e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 271 taccatttcttctaccaatacaatcccaagggcgccgtatggggcaacatcgtgtgggc 329
|||||| | |||||||| ||||||||||| || ||||| ||||||||||| || |||||
Sbjct: 1 taccatctattctaccagtacaatcccaaaggtgccgtgtggggcaacattgtctgggc 59
>gb|CX168427.1|CX168427 B06_69-85_04.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 592
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 260 acaaggggtggtaccatttcttctaccaatacaatcc 296
||||||| ||||||||| | |||||||||||||||||
Sbjct: 246 acaagggatggtaccatctattctaccaatacaatcc 282
>gb|CX169703.1|CX169703 E01_69-117_09.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 716
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 260 acaaggggtggtaccatttcttctaccaatacaatcc 296
||||||| ||||||||| | |||||||||||||||||
Sbjct: 261 acaagggatggtaccatctattctaccaatacaatcc 297
>gb|CA925615.1|CA925615 MTU7TL.P3.G07 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 284
Score = 46.1 bits (23), Expect = 0.005
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 202 gggtaccacttccagccccccaagaactggatcaa 236
||||| ||||||||||| || ||||||||||||||
Sbjct: 249 gggtatcacttccagcctcctaagaactggatcaa 283
>gb|CA925485.1|CA925485 MTU7TL.P1.H09 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 284
Score = 42.1 bits (21), Expect = 0.082
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 208 cacttccagccccccaagaactggatcaa 236
||||||||||| || ||||||||||||||
Sbjct: 255 cacttccagcctcctaagaactggatcaa 283
>gb|CA933578.1|CA933578 MTU5CS.P9.G08 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 353
Score = 42.1 bits (21), Expect = 0.082
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 228 ctggatcaatgatcccaacgcgcccatgtactacaaggggtggtaccatttcttctacca 287
|||||| || |||||||||| || |||| ||||| || ||| |||| |||||||||||
Sbjct: 269 ctggatgaacgatcccaacggtccattgtattacaaaggctggaaccacttcttctacca 328
Query: 288 ataca 292
|||||
Sbjct: 329 ataca 333
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 150,229
Number of Sequences: 369679
Number of extensions: 150229
Number of successful extensions: 38742
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38727
Number of HSP's gapped (non-prelim): 15
length of query: 2027
length of database: 203,408,664
effective HSP length: 20
effective length of query: 2007
effective length of database: 196,015,084
effective search space: 393402273588
effective search space used: 393402273588
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)