BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493695.2.1
(570 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ769944.1|AJ769944 AJ769944 Populus euphratica leaf 3-6... 42 0.023
gb|CV131014.1|CV131014 L1P03c11 Populus stem seasonal libra... 42 0.023
gb|CV131748.1|CV131748 L3P05g12 Populus stem seasonal libra... 42 0.023
gb|CV236356.1|CV236356 WS01223.B21_M23 PT-GT-FL-A-3 Populus... 42 0.023
gb|CX170110.1|CX170110 G04_69-28_14.ab1 leaf inoculated wit... 42 0.023
gb|CX182805.1|CX182805 D01_45-2_07.ab1 leaf inoculated with... 42 0.023
gb|DT477940.1|DT477940 WS02521.BR_G15 PT-MB-N-A-15 Populus ... 42 0.023
gb|DT483013.1|DT483013 WS02521.B21_G15 PT-MB-N-A-15 Populus... 42 0.023
gb|BU810332.1|BU810332 UL69C10 Populus leaf cDNA library Po... 40 0.089
gb|BU812911.1|BU812911 N002H05 Populus bark cDNA library Po... 40 0.089
gb|BU813916.1|BU813916 N022F01 Populus bark cDNA library Po... 40 0.089
gb|BU814333.1|BU814333 N028A04 Populus bark cDNA library Po... 40 0.089
gb|BU827051.1|BU827051 UK127TH02 Populus apical shoot cDNA ... 40 0.089
gb|BU863152.1|BU863152 S024F09 Populus imbibed seed cDNA li... 40 0.089
gb|CB239825.1|CB239825 RSH17C06 two-month-old roots from cl... 40 0.089
gb|CF231559.1|CF231559 PtaC0022H3H0315 Poplar cDNA library ... 40 0.089
gb|CN518692.1|CN518692 GQ0102.B3_L17 GQ010 Populus trichoca... 40 0.089
gb|CK318362.1|CK318362 B9P08d09 Populus stem seasonal libra... 40 0.089
gb|AJ773868.1|AJ773868 AJ773868 Populus euphratica shoot 3-... 40 0.089
gb|DN488698.1|DN488698 S024F09.3pR Populus imbibed seed cDN... 40 0.089
gb|DN498409.1|DN498409 S024F09.5pR Populus imbibed seed cDN... 40 0.089
gb|CF119135.1|CF119135 MTU10CS.P13.H12 Aspen stem cDNA Libr... 38 0.35
gb|AJ770410.1|AJ770410 AJ770410 Populus euphratica leaf 3-6... 38 0.35
>gb|AJ769944.1|AJ769944 AJ769944 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100004H03F1, mRNA sequence
Length = 506
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 279 ggaagggaaggggaaggagaaggag 303
||||||||||||||||||| |||||
Sbjct: 61 ggaagggaaggggaaggaggaggag 37
>gb|CV131014.1|CV131014 L1P03c11 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 812
Score = 42.1 bits (21), Expect = 0.023
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 283 gggaaggggaaggagaaggag 303
|||||||||||||||||||||
Sbjct: 158 gggaaggggaaggagaaggag 138
>gb|CV131748.1|CV131748 L3P05g12 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 525
Score = 42.1 bits (21), Expect = 0.023
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 283 gggaaggggaaggagaaggag 303
|||||||||||||||||||||
Sbjct: 128 gggaaggggaaggagaaggag 108
>gb|CV236356.1|CV236356 WS01223.B21_M23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01223_M23 3', mRNA sequence
Length = 797
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 279 ggaagggaaggggaaggagaaggag 303
||||||||||||||||||| |||||
Sbjct: 702 ggaagggaaggggaaggaggaggag 726
>gb|CX170110.1|CX170110 G04_69-28_14.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 658
Score = 42.1 bits (21), Expect = 0.023
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 283 gggaaggggaaggagaaggag 303
|||||||||||||||||||||
Sbjct: 91 gggaaggggaaggagaaggag 71
>gb|CX182805.1|CX182805 D01_45-2_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 623
Score = 42.1 bits (21), Expect = 0.023
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 283 gggaaggggaaggagaaggag 303
|||||||||||||||||||||
Sbjct: 95 gggaaggggaaggagaaggag 75
>gb|DT477940.1|DT477940 WS02521.BR_G15 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_G15 5', mRNA sequence
Length = 566
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 279 ggaagggaaggggaaggagaaggag 303
||||||||||||||||||| |||||
Sbjct: 63 ggaagggaaggggaaggaggaggag 39
>gb|DT483013.1|DT483013 WS02521.B21_G15 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_G15 3', mRNA sequence
Length = 566
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 279 ggaagggaaggggaaggagaaggag 303
||||||||||||||||||| |||||
Sbjct: 504 ggaagggaaggggaaggaggaggag 528
>gb|BU810332.1|BU810332 UL69C10 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 470
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 gactacatctacacccagca 383
||||||||||||||||||||
Sbjct: 314 gactacatctacacccagca 333
>gb|BU812911.1|BU812911 N002H05 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 gactacatctacacccagca 383
||||||||||||||||||||
Sbjct: 282 gactacatctacacccagca 301
>gb|BU813916.1|BU813916 N022F01 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 450
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 gactacatctacacccagca 383
||||||||||||||||||||
Sbjct: 131 gactacatctacacccagca 150
>gb|BU814333.1|BU814333 N028A04 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 570
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 gactacatctacacccagca 383
||||||||||||||||||||
Sbjct: 251 gactacatctacacccagca 270
>gb|BU827051.1|BU827051 UK127TH02 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 585
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 gactacatctacacccagca 383
||||||||||||||||||||
Sbjct: 313 gactacatctacacccagca 332
>gb|BU863152.1|BU863152 S024F09 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 464
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 gactacatctacacccagca 383
||||||||||||||||||||
Sbjct: 233 gactacatctacacccagca 252
>gb|CB239825.1|CB239825 RSH17C06 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 541
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 gactacatctacacccagca 383
||||||||||||||||||||
Sbjct: 338 gactacatctacacccagca 357
>gb|CF231559.1|CF231559 PtaC0022H3H0315 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 616
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 283 gggaaggggaaggagaagga 302
||||||||||||||||||||
Sbjct: 91 gggaaggggaaggagaagga 72
>gb|CN518692.1|CN518692 GQ0102.B3_L17 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0102_L17 5', mRNA sequence
Length = 537
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 gactacatctacacccagca 383
||||||||||||||||||||
Sbjct: 299 gactacatctacacccagca 318
>gb|CK318362.1|CK318362 B9P08d09 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 405
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 gactacatctacacccagca 383
||||||||||||||||||||
Sbjct: 126 gactacatctacacccagca 145
>gb|AJ773868.1|AJ773868 AJ773868 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300006A04F1, mRNA sequence
Length = 630
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 gactacatctacacccagca 383
||||||||||||||||||||
Sbjct: 303 gactacatctacacccagca 322
>gb|DN488698.1|DN488698 S024F09.3pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S024F09 3', mRNA sequence
Length = 480
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 364 gactacatctacacccagca 383
||||||||||||||||||||
Sbjct: 164 gactacatctacacccagca 145
>gb|DN498409.1|DN498409 S024F09.5pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S024F09 5', mRNA sequence
Length = 552
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 gactacatctacacccagca 383
||||||||||||||||||||
Sbjct: 317 gactacatctacacccagca 336
>gb|CF119135.1|CF119135 MTU10CS.P13.H12 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 780
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 cggcagcggcggcggcggc 230
|||||||||||||||||||
Sbjct: 733 cggcagcggcggcggcggc 715
>gb|AJ770410.1|AJ770410 AJ770410 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100011F01F1, mRNA sequence
Length = 476
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 279 ggaagggaaggggaaggag 297
|||||||||||||||||||
Sbjct: 455 ggaagggaaggggaaggag 473
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 54,138
Number of Sequences: 369679
Number of extensions: 54138
Number of successful extensions: 20603
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20563
Number of HSP's gapped (non-prelim): 40
length of query: 570
length of database: 203,408,664
effective HSP length: 19
effective length of query: 551
effective length of database: 196,384,763
effective search space: 108208004413
effective search space used: 108208004413
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)