BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2493645.2.1
         (870 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA934862.1|CA934862  MTU5TS.P24.H08 Aspen stem cDNA Libra...    44   0.009
gb|CX183969.1|CX183969  F06_45-30_12.ab1 leaf inoculated wit...    44   0.009
gb|BI070136.1|BI070136  C014P56U Populus strain T89 leaves P...    42   0.035
gb|DT506773.1|DT506773  WS02416.BR_H16 PTxD-ICC-N-A-14 Popul...    42   0.035
gb|CA823903.1|CA823903  R33C02 two-month-old roots from clon...    40   0.14 
gb|CX173022.1|CX173022  F04_69-21_12.ab1 leaf inoculated wit...    40   0.14 
gb|CX181933.1|CX181933  G12_45-94_14.ab1 leaf inoculated wit...    40   0.14 

>gb|CA934862.1|CA934862 MTU5TS.P24.H08 Aspen stem cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 386

 Score = 44.1 bits (22), Expect = 0.009
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 662 tattattactactactactact 683
           ||||||||||||||||||||||
Sbjct: 374 tattattactactactactact 353



>gb|CX183969.1|CX183969 F06_45-30_12.ab1 leaf inoculated with Marssonia pathogen of Populus
           euramericana Populus x canadensis cDNA, mRNA sequence
          Length = 600

 Score = 44.1 bits (22), Expect = 0.009
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 662 tattattactactactactactcttc 687
           |||||||| |||||||||||||||||
Sbjct: 82  tattattattactactactactcttc 107



>gb|BI070136.1|BI070136 C014P56U Populus strain T89 leaves Populus tremula x Populus
           tremuloides cDNA, mRNA sequence
          Length = 353

 Score = 42.1 bits (21), Expect = 0.035
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 261 tcctcttcttcctcgtcctcctcct 285
           |||||||||||||| ||||||||||
Sbjct: 160 tcctcttcttcctcctcctcctcct 136



>gb|DT506773.1|DT506773 WS02416.BR_H16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02416_H16 5', mRNA sequence
          Length = 812

 Score = 42.1 bits (21), Expect = 0.035
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 263 ctcttcttcctcgtcctcctc 283
           |||||||||||||||||||||
Sbjct: 173 ctcttcttcctcgtcctcctc 153



>gb|CA823903.1|CA823903 R33C02 two-month-old roots from clone 'Beaupre' Populus trichocarpa
           x Populus deltoides cDNA 5', mRNA sequence
          Length = 539

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 261 tcctcttcttcctcgtcctc 280
           ||||||||||||||||||||
Sbjct: 263 tcctcttcttcctcgtcctc 244



>gb|CX173022.1|CX173022 F04_69-21_12.ab1 leaf inoculated with Marssonia pathogen of Populus
           deltoides Populus deltoides cDNA, mRNA sequence
          Length = 647

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 660 gctattattactactactactact 683
           |||| |||||||||||||||||||
Sbjct: 157 gctactattactactactactact 134



>gb|CX181933.1|CX181933 G12_45-94_14.ab1 leaf inoculated with Marssonia pathogen of Populus
           euramericana Populus x canadensis cDNA, mRNA sequence
          Length = 670

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 660 gctattattactactactactact 683
           |||| |||||||||||||||||||
Sbjct: 146 gctactattactactactactact 123



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 86,798
Number of Sequences: 369679
Number of extensions: 86798
Number of successful extensions: 27122
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27101
Number of HSP's gapped (non-prelim): 18
length of query: 870
length of database: 203,408,664
effective HSP length: 19
effective length of query: 851
effective length of database: 196,384,763
effective search space: 167123433313
effective search space used: 167123433313
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)