BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493528.2.1
(627 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV258030.1|CV258030 WS0248.B21_F10 PTxD-ICC-N-A-14 Popul... 72 3e-011
gb|CF234505.1|CF234505 Ptajxojxo3F12F1212 Poplar cDNA libra... 62 3e-008
gb|DT517491.1|DT517491 WS02434.B21_H07 PTxD-ICC-N-A-14 Popu... 58 4e-007
gb|CX655805.1|CX655805 PO02040C09 Poplar SC cDNA library Po... 44 0.006
gb|DN490118.1|DN490118 UB17CPC04.3pR Populus active cambium... 44 0.006
gb|DN500086.1|DN500086 UB17CPC04.5pR Populus active cambium... 44 0.006
gb|DT482115.1|DT482115 WS02533.BR_P06 PT-MB-N-A-15 Populus ... 44 0.006
gb|DT487531.1|DT487531 WS02533.B21_P06 PT-MB-N-A-15 Populus... 44 0.006
gb|BU809371.1|BU809371 UL57PA03 Populus leaf cDNA library P... 38 0.39
gb|BU811359.1|BU811359 UL83TC10 Populus leaf cDNA library P... 38 0.39
>gb|CV258030.1|CV258030 WS0248.B21_F10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0248_F10 3', mRNA sequence
Length = 393
Score = 71.9 bits (36), Expect = 3e-011
Identities = 99/120 (82%)
Strand = Plus / Plus
Query: 93 attgatctctccaattatatacactggtcttccatcaaaaacagacgacagtgtcgactc 152
|||||||||||| ||||||| || |||||||||||||| | ||||| |||||| |||
Sbjct: 161 attgatctctccgattatattaacaggtcttccatcaaacatggacgagagtgtcctctc 220
Query: 153 acacagcttctttagttcccttgtttttgtaattgctgcctcttgctttggccatgatga 212
||| || ||||| || ||||| ||||| | || ||||| || |||||||||||||||||
Sbjct: 221 acaaagtttcttcagctccctggttttagcaagagctgcttcctgctttggccatgatga 280
>gb|CF234505.1|CF234505 Ptajxojxo3F12F1212 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 754
Score = 61.9 bits (31), Expect = 3e-008
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 95 tgatctctccaattatatacactggtcttccatcaaaaacagacgacagtgtcgactcac 154
|||||| ||| ||||||| || |||||||||||||| | ||||| |||||| |||||
Sbjct: 595 tgatctntccgattatattaacaggtcttccatcaaacatggacgagagtgtcctctcac 536
Query: 155 acagcttctttagttcccttgtttttgtaattgctgcctcttgctttggccatgatga 212
| || ||||| || ||||| ||||| | || ||||| || |||||||||||||||||
Sbjct: 535 aaagtttcttcagctccctggttttagaaagagctgcttcctgctttggccatgatga 478
>gb|DT517491.1|DT517491 WS02434.B21_H07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_H07 3', mRNA sequence
Length = 825
Score = 58.0 bits (29), Expect = 4e-007
Identities = 99/121 (81%), Gaps = 1/121 (0%)
Strand = Plus / Plus
Query: 93 attgatctctccaattatatacactggtcttccatcaaaaacag-acgacagtgtcgact 151
|||||||||||| ||||||| || |||||||||||||| | | |||| |||||| ||
Sbjct: 111 attgatctctccgattatattaacaggtcttccatcaaacatggcacgagagtgtcctct 170
Query: 152 cacacagcttctttagttcccttgtttttgtaattgctgcctcttgctttggccatgatg 211
|||| || ||||| || ||||| ||||| | || ||||| || ||||||||||||||||
Sbjct: 171 cacaaagtttcttcagctccctggttttagcaagagctgcttcctgctttggccatgatg 230
Query: 212 a 212
|
Sbjct: 231 a 231
>gb|CX655805.1|CX655805 PO02040C09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02040C09 5', mRNA sequence
Length = 622
Score = 44.1 bits (22), Expect = 0.006
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 591 tctatcttcagctatcatttga 612
||||||||||||||||||||||
Sbjct: 583 tctatcttcagctatcatttga 604
>gb|DN490118.1|DN490118 UB17CPC04.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB17CPC04 3', mRNA sequence
Length = 737
Score = 44.1 bits (22), Expect = 0.006
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 591 tctatcttcagctatcatttga 612
||||||||||||||||||||||
Sbjct: 512 tctatcttcagctatcatttga 533
>gb|DN500086.1|DN500086 UB17CPC04.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB17CPC04 5', mRNA sequence
Length = 886
Score = 44.1 bits (22), Expect = 0.006
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 591 tctatcttcagctatcatttga 612
||||||||||||||||||||||
Sbjct: 653 tctatcttcagctatcatttga 632
>gb|DT482115.1|DT482115 WS02533.BR_P06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_P06 5', mRNA sequence
Length = 813
Score = 44.1 bits (22), Expect = 0.006
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 591 tctatcttcagctatcatttga 612
||||||||||||||||||||||
Sbjct: 495 tctatcttcagctatcatttga 474
>gb|DT487531.1|DT487531 WS02533.B21_P06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_P06 3', mRNA sequence
Length = 907
Score = 44.1 bits (22), Expect = 0.006
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 591 tctatcttcagctatcatttga 612
||||||||||||||||||||||
Sbjct: 654 tctatcttcagctatcatttga 675
>gb|BU809371.1|BU809371 UL57PA03 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 475
Score = 38.2 bits (19), Expect = 0.39
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 213 tgacagtgcgttttgcagc 231
|||||||||||||||||||
Sbjct: 326 tgacagtgcgttttgcagc 344
>gb|BU811359.1|BU811359 UL83TC10 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 480
Score = 38.2 bits (19), Expect = 0.39
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 213 tgacagtgcgttttgcagc 231
|||||||||||||||||||
Sbjct: 302 tgacagtgcgttttgcagc 320
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 92,234
Number of Sequences: 369679
Number of extensions: 92234
Number of successful extensions: 26417
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26405
Number of HSP's gapped (non-prelim): 11
length of query: 627
length of database: 203,408,664
effective HSP length: 19
effective length of query: 608
effective length of database: 196,384,763
effective search space: 119401935904
effective search space used: 119401935904
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)