BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2485944.3.1
(991 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT510115.1|DT510115 WS02425.BR_K06 PTxD-ICC-N-A-14 Popul... 109 2e-022
gb|DV466086.1|DV466086 MTUNUL1.P47.B02 NUL Populus fremonti... 109 2e-022
gb|AI161886.1|AI161886 A008P65U Hybrid aspen plasmid librar... 105 3e-021
gb|CK099022.1|CK099022 A047P46.5pR Hybrid aspen plasmid lib... 105 3e-021
gb|CK117498.1|CK117498 B051P84 Hybrid aspen plasmid library... 105 3e-021
gb|CX656969.1|CX656969 PO02029B11 Poplar SC cDNA library Po... 105 3e-021
gb|AI163750.1|AI163750 A047P46U Hybrid aspen plasmid librar... 98 8e-019
gb|BU885393.1|BU885393 R030F02 Populus root cDNA library Po... 96 3e-018
gb|DT487458.1|DT487458 WS02533.B21_L24 PT-MB-N-A-15 Populus... 96 3e-018
gb|AI162855.1|AI162855 A025P58U Hybrid aspen plasmid librar... 88 8e-016
gb|DT514736.1|DT514736 WS02425.B21_K06 PTxD-ICC-N-A-14 Popu... 84 1e-014
gb|DT519641.1|DT519641 WS02443.B21_D18 PTxD-ICC-N-A-14 Popu... 82 5e-014
gb|CX657348.1|CX657348 PO02042H04 Poplar SC cDNA library Po... 80 2e-013
gb|DT518534.1|DT518534 WS02438.B21_H09 PTxD-ICC-N-A-14 Popu... 78 7e-013
gb|CV243248.1|CV243248 WS02518.B21_F05 PT-MB-N-A-15 Populus... 74 1e-011
gb|DT507230.1|DT507230 WS02417.BR_L07 PTxD-ICC-N-A-14 Popul... 60 2e-007
gb|AI166747.1|AI166747 xylem.est.549 Poplar xylem Lambda ZA... 48 6e-004
gb|BI121060.1|BI121060 F027P86Y Populus flower cDNA library... 48 6e-004
gb|BI129073.1|BI129073 G085P56Y Populus cambium cDNA librar... 48 6e-004
gb|BU827537.1|BU827537 K004P53P Populus apical shoot cDNA l... 48 6e-004
gb|BU827653.1|BU827653 K006P52P Populus apical shoot cDNA l... 48 6e-004
gb|BU828333.1|BU828333 K021P11P Populus apical shoot cDNA l... 48 6e-004
gb|BU831682.1|BU831682 T024E02 Populus apical shoot cDNA li... 48 6e-004
gb|BU835135.1|BU835135 T070A06 Populus apical shoot cDNA li... 48 6e-004
gb|BU875989.1|BU875989 V014B11 Populus flower cDNA library ... 48 6e-004
gb|BU876318.1|BU876318 V019B10 Populus flower cDNA library ... 48 6e-004
gb|BU876646.1|BU876646 V023D02 Populus flower cDNA library ... 48 6e-004
gb|BU876719.1|BU876719 V024E01 Populus flower cDNA library ... 48 6e-004
gb|BU877508.1|BU877508 V035D03 Populus flower cDNA library ... 48 6e-004
gb|BU877904.1|BU877904 V040G02 Populus flower cDNA library ... 48 6e-004
gb|BU878032.1|BU878032 V042D01 Populus flower cDNA library ... 48 6e-004
gb|BU878114.1|BU878114 V043C10 Populus flower cDNA library ... 48 6e-004
gb|BU878192.1|BU878192 V044B11 Populus flower cDNA library ... 48 6e-004
gb|BU882924.1|BU882924 UM84TA09 Populus flower cDNA library... 48 6e-004
gb|BU895165.1|BU895165 X020B08 Populus wood cDNA library Po... 48 6e-004
gb|CK101181.1|CK101181 F027P86.5pR Populus flower cDNA libr... 48 6e-004
gb|CK108342.1|CK108342 GO85P56 Populus tension wood cDNA li... 48 6e-004
gb|CK319578.1|CK319578 B9SP03a04 Populus stem seasonal libr... 48 6e-004
gb|DT474466.1|DT474466 WS0124.BR_A01 PT-GT-FL-A-3 Populus t... 48 6e-004
gb|DT475745.1|DT475745 WS0128.BR_B06 PT-GT-FL-A-3 Populus t... 48 6e-004
gb|DT497068.1|DT497068 WS01125.BR_G09 PT-P-FL-A-2 Populus t... 48 6e-004
gb|AY126444.1| Populus tremula x Populus tremuloides putati... 48 6e-004
gb|CK093640.1|CK093640 G126P93.3pR Populus tension wood cDN... 46 0.003
gb|CV255604.1|CV255604 WS02414.B21_H21 PTxD-ICC-N-A-14 Popu... 46 0.003
gb|CA924720.1|CA924720 MTU7CL.P9.C01 Aspen leaf cDNA Librar... 44 0.010
gb|CX653945.1|CX653945 PO02010C11 Poplar SC cDNA library Po... 44 0.010
gb|DT511871.1|DT511871 WS02417.B21_L07 PTxD-ICC-N-A-14 Popu... 42 0.040
gb|BU863318.1|BU863318 S026F06 Populus imbibed seed cDNA li... 40 0.16
gb|BU868822.1|BU868822 M122F06 Populus flower cDNA library ... 40 0.16
gb|BU876416.1|BU876416 V020D09 Populus flower cDNA library ... 40 0.16
gb|BU892472.1|BU892472 P064C08 Populus petioles cDNA librar... 40 0.16
gb|CA822381.1|CA822381 R07E04 two-month-old roots from clon... 40 0.16
gb|DN494716.1|DN494716 M122F06.5pR Populus female catkins c... 40 0.16
gb|DT499498.1|DT499498 WS0118.BR_H17 PT-P-FL-A-2 Populus tr... 40 0.16
gb|DT509994.1|DT509994 WS02425.BR_E22 PTxD-ICC-N-A-14 Popul... 40 0.16
gb|DT514615.1|DT514615 WS02425.B21_E22 PTxD-ICC-N-A-14 Popu... 40 0.16
gb|AF273256.1|AF273256 Populus tremuloides sinapyl alcohol ... 40 0.16
gb|AY850131.1| Populus tremula x Populus tremuloides sinapy... 40 0.16
>gb|DT510115.1|DT510115 WS02425.BR_K06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02425_K06 5', mRNA sequence
Length = 770
Score = 109 bits (55), Expect = 2e-022
Identities = 148/179 (82%)
Strand = Plus / Plus
Query: 774 gtccatgaaaggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacct 833
|||||||||||||| ||||| ||||| ||||| || |||||||| |||||||||
Sbjct: 577 gtccatgaaaggtactgctttcggatacctgatggttatcctttggcctctgcagcacct 636
Query: 834 cttctgtgtgctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacct 893
|| || ||||||||||| || ||||| | || ||||||||||| || ||||||||||||
Sbjct: 637 ctgctttgtgctggaatcactgtgtacaaccccatgatgcgacataagatgaaccaacct 696
Query: 894 ggaaagtcacttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttgg 952
|| || || ||||| || ||||| || |||||||||||||||||||| ||||| |||||
Sbjct: 697 ggtaaatctcttggagtgattgggctcggtggtctgggtcacatggcagtgaagtttgg 755
>gb|DV466086.1|DV466086 MTUNUL1.P47.B02 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 920
Score = 109 bits (55), Expect = 2e-022
Identities = 148/179 (82%)
Strand = Plus / Plus
Query: 774 gtccatgaaaggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacct 833
|||||||||||||| ||||| ||||| ||||| || |||||||| |||||||||
Sbjct: 561 gtccatgaaaggtactgctttcggatacctgatggttatcctttggcctctgcagcacct 620
Query: 834 cttctgtgtgctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacct 893
|| || ||||||||||| || ||||| | || ||||||||||| || ||||||||||||
Sbjct: 621 ctgctttgtgctggaatcactgtgtacaaccccatgatgcgacataagatgaaccaacct 680
Query: 894 ggaaagtcacttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttgg 952
|| || || ||||| || ||||| || |||||||||||||||||||| ||||| |||||
Sbjct: 681 ggtaaatctcttggagtgattgggctcggtggtctgggtcacatggcagtgaagtttgg 739
>gb|AI161886.1|AI161886 A008P65U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 523
Score = 105 bits (53), Expect = 3e-021
Identities = 108/125 (86%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 828 gcacctcttctgtgtgctggaataaccgtgtatactccaatgatgcgacacaacatgaac 887
|||||||| || ||||||||||| |||||||| || ||| |||||||||| || ||||||
Sbjct: 284 gcacctctgctctgtgctggaattaccgtgtacacccca-tgatgcgacataagatgaac 342
Query: 888 caacctggaaagtcacttggggtcattggtcttggtggtctgggtcacatggctgtgaaa 947
|||||||| || || ||||| || ||||| || |||||||||||||||||||| |||||
Sbjct: 343 caacctggtaaatctcttggagtgattgggctcggtggtctgggtcacatggcagtgaag 402
Query: 948 tttgg 952
|||||
Sbjct: 403 tttgg 407
>gb|CK099022.1|CK099022 A047P46.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A047P46 5', mRNA sequence
Length = 469
Score = 105 bits (53), Expect = 3e-021
Identities = 107/125 (85%)
Strand = Plus / Plus
Query: 828 gcacctcttctgtgtgctggaataaccgtgtatactccaatgatgcgacacaacatgaac 887
|||||||| || ||||||||||| |||||||| | || ||||||||||| || ||||||
Sbjct: 6 gcacctctgctctgtgctggaattaccgtgtacaaccccatgatgcgacataagatgaac 65
Query: 888 caacctggaaagtcacttggggtcattggtcttggtggtctgggtcacatggctgtgaaa 947
|||||||| || || ||||| || ||||| || |||||||||||||||||||| |||||
Sbjct: 66 caacctggtaaatctcttggagtgattgggctcggtggtctgggtcacatggcagtgaag 125
Query: 948 tttgg 952
|||||
Sbjct: 126 tttgg 130
>gb|CK117498.1|CK117498 B051P84 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B051P84 5', mRNA sequence
Length = 269
Score = 105 bits (53), Expect = 3e-021
Identities = 98/113 (86%)
Strand = Plus / Plus
Query: 840 tgtgctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaag 899
||||||||||| |||||||| | || ||||||||||| || |||||||||||||||||
Sbjct: 13 tgtgctggaattaccgtgtacaaccccatgatgcgacataagatgaaccaacctggaaaa 72
Query: 900 tcacttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttgg 952
|| ||||| || ||||| || |||||||||||||||||||| ||||| |||||
Sbjct: 73 tctcttggagtgattgggctcggtggtctgggtcacatggcagtgaagtttgg 125
>gb|CX656969.1|CX656969 PO02029B11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02029B11 5', mRNA sequence
Length = 305
Score = 105 bits (53), Expect = 3e-021
Identities = 107/125 (85%)
Strand = Plus / Plus
Query: 828 gcacctcttctgtgtgctggaataaccgtgtatactccaatgatgcgacacaacatgaac 887
|||||||| || ||||||||||| |||||||| | || ||||||||||| || ||||||
Sbjct: 43 gcacctctgctctgtgctggaattaccgtgtacaaccccatgatgcgacataagatgaac 102
Query: 888 caacctggaaagtcacttggggtcattggtcttggtggtctgggtcacatggctgtgaaa 947
|||||||| || || ||||| || ||||| || |||||||||||||||||||| |||||
Sbjct: 103 caacctggtaaatctcttggagtgattgggctcggtggtctgggtcacatggcagtgaag 162
Query: 948 tttgg 952
|||||
Sbjct: 163 tttgg 167
>gb|AI163750.1|AI163750 A047P46U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 323
Score = 97.6 bits (49), Expect = 8e-019
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 840 tgtgctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaag 899
||||||||||| |||||||| | || ||||||||||| || |||||||||||||| ||
Sbjct: 6 tgtgctggaattaccgtgtacaaccccatgatgcgacataagatgaaccaacctggtaaa 65
Query: 900 tcacttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttgg 952
|| ||||| || ||||| || |||||||||||||||||||| ||||| |||||
Sbjct: 66 tctcttggagtgattgggctcggtggtctgggtcacatggcagtgaagtttgg 118
>gb|BU885393.1|BU885393 R030F02 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 676
Score = 95.6 bits (48), Expect = 3e-018
Identities = 108/128 (84%)
Strand = Plus / Plus
Query: 825 gcagcacctcttctgtgtgctggaataaccgtgtatactccaatgatgcgacacaacatg 884
|||||||||||| | ||||||||||| |||||||| | || ||| | ||||| || |||
Sbjct: 6 gcagcacctcttttttgtgctggaatcaccgtgtacaaccccatggttcgacataagatg 65
Query: 885 aaccaacctggaaagtcacttggggtcattggtcttggtggtctgggtcacatggctgtg 944
||||||||||| || || ||||| || ||||| || |||||||||||||||||||| |||
Sbjct: 66 aaccaacctggtaaatctcttggagtgattgggctcggtggtctgggtcacatggcagtg 125
Query: 945 aaatttgg 952
|| |||||
Sbjct: 126 aagtttgg 133
>gb|DT487458.1|DT487458 WS02533.B21_L24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_L24 3', mRNA sequence
Length = 867
Score = 95.6 bits (48), Expect = 3e-018
Identities = 108/128 (84%)
Strand = Plus / Minus
Query: 825 gcagcacctcttctgtgtgctggaataaccgtgtatactccaatgatgcgacacaacatg 884
||||||||||| || ||||||||||| || ||||| | || ||||||||||| || |||
Sbjct: 843 gcagcacctctgctttgtgctggaatcactgtgtacaaccccatgatgcgacataagatg 784
Query: 885 aaccaacctggaaagtcacttggggtcattggtcttggtggtctgggtcacatggctgtg 944
||||||||||| || || ||||| || ||||| || ||||| |||||||||||||| |||
Sbjct: 783 aaccaacctggtaaatctcttggagtgattgggctcggtggactgggtcacatggcagtg 724
Query: 945 aaatttgg 952
|| |||||
Sbjct: 723 aagtttgg 716
>gb|AI162855.1|AI162855 A025P58U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 397
Score = 87.7 bits (44), Expect = 8e-016
Identities = 105/124 (84%), Gaps = 1/124 (0%)
Strand = Plus / Plus
Query: 828 gcacctcttctgtgtgctggaataaccgtgtatactccaatgatgcgacacaacatgaac 887
|||||||| || ||||||||||| |||||||| | || ||||||||||| || ||||||
Sbjct: 189 gcacctctgctctgtgctggaattaccgtgtacaaccccatgatgcgacataagatgaac 248
Query: 888 caacctggaaagtcacttggggtcattggtcttggtggtctgggtcacatggctgtgaaa 947
|||||||| || || ||||| || ||||| || || ||||||||||||||||| |||||
Sbjct: 249 caacctggtaaatctcttggagtgattgggctcgg-ggtctgggtcacatggcagtgaag 307
Query: 948 tttg 951
||||
Sbjct: 308 tttg 311
>gb|DT514736.1|DT514736 WS02425.B21_K06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02425_K06 3', mRNA sequence
Length = 826
Score = 83.8 bits (42), Expect = 1e-014
Identities = 75/86 (87%)
Strand = Plus / Minus
Query: 867 atgatgcgacacaacatgaaccaacctggaaagtcacttggggtcattggtcttggtggt 926
||||||||||| || |||||||||||||| || || ||||| || ||||| || ||||||
Sbjct: 803 atgatgcgacataagatgaaccaacctggtaaatctcttggagtgattgggctcggtggt 744
Query: 927 ctgggtcacatggctgtgaaatttgg 952
|||||||||||||| ||||| |||||
Sbjct: 743 ctgggtcacatggcagtgaagtttgg 718
>gb|DT519641.1|DT519641 WS02443.B21_D18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02443_D18 3', mRNA sequence
Length = 899
Score = 81.8 bits (41), Expect = 5e-014
Identities = 104/125 (83%)
Strand = Plus / Minus
Query: 861 actccaatgatgcgacacaacatgaaccaacctggaaagtcacttggggtcattggtctt 920
||||| ||||| || ||||| ||||||||||||||||| || || ||||| ||||| ||
Sbjct: 872 actcccatgattcgtcacaagatgaaccaacctggaaaatccctcggggtgattggactg 813
Query: 921 ggtggtctgggtcacatggctgtgaaatttggtaaagcatttggtcttaaggtcacagtt 980
|| || || ||||||||||||||||| ||||| || || ||||| | || |||||||||
Sbjct: 812 ggcggccttggtcacatggctgtgaagtttgggaaggcttttggaatgaatgtcacagtt 753
Query: 981 ttcag 985
|||||
Sbjct: 752 ttcag 748
>gb|CX657348.1|CX657348 PO02042H04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02042H04 5', mRNA sequence
Length = 591
Score = 79.8 bits (40), Expect = 2e-013
Identities = 135/167 (80%)
Strand = Plus / Plus
Query: 774 gtccatgaaaggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacct 833
|||||||||||||| ||||| ||||| ||||| || |||||||| | |||||||
Sbjct: 349 gtccatgaaaggtactgctttcggatacctgatggttatcctttggcctctgnagcacct 408
Query: 834 cttctgtgtgctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacct 893
|| || ||||| ||||| |||||||| | || ||| | ||||| || ||||||||||||
Sbjct: 409 ctgctttgtgcgggaatcaccgtgtacaaccccatggttcgacataagatgaaccaacct 468
Query: 894 ggaaagtcacttggggtcattggtcttggtggtctgggtcacatggc 940
|| || || ||||| || ||||| || ||||||||||||||||||||
Sbjct: 469 ggtaaatctcttggagtgattgggctcggtggtctgggtcacatggc 515
>gb|DT518534.1|DT518534 WS02438.B21_H09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_H09 3', mRNA sequence
Length = 876
Score = 77.8 bits (39), Expect = 7e-013
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 867 atgatgcgacacaacatgaaccaacctggaaagtcacttggggtcattggtcttggtggt 926
||||| || ||||| ||||||||||||||||| || || ||||| ||||| || || ||
Sbjct: 873 atgattcgtcacaagatgaaccaacctggaaaatccctcggggtgattggactgggcggc 814
Query: 927 ctgggtcacatggctgtgaaatttggtaaagcatttggtcttaaggtcacagttttcag 985
|| ||||||||||||||||| ||||| || || ||||| | || ||||||||||||||
Sbjct: 813 cttggtcacatggctgtgaagtttgggaaggcttttggaatgaatgtcacagttttcag 755
>gb|CV243248.1|CV243248 WS02518.B21_F05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02518_F05 3', mRNA sequence
Length = 883
Score = 73.8 bits (37), Expect = 1e-011
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 885 aaccaacctggaaagtcacttggggtcattggtcttggtggtctgggtcacatggctgtg 944
|||||||||||||| || || ||||| ||||| ||||| || || |||||||||||||||
Sbjct: 883 aaccaacctggaaaatccctcggggtgattggacttggcggccttggtcacatggctgtg 824
Query: 945 aaatttggtaaagcatttggtcttaaggtcacagttttcag 985
|| ||||| || || ||||| | || ||||||||||||||
Sbjct: 823 aagtttgggaaggcttttggaatgaatgtcacagttttcag 783
>gb|DT507230.1|DT507230 WS02417.BR_L07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_L07 5', mRNA sequence
Length = 842
Score = 60.0 bits (30), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 867 atgatgcgacacaacatgaaccaacctggaaagtcacttggggtcattggtcttggtggt 926
||||| || ||||| ||||||||||||||||| || || ||||| ||||| || || ||
Sbjct: 731 atgattcgtcacaagatgaaccaacctggaaaatccctcggggtgattggactgggcggc 790
Query: 927 ctgggtcacatggctgtgaaatttgg 952
|| ||||||||| ||||||| |||||
Sbjct: 791 cttggtcacatgcctgtgaagtttgg 816
>gb|AI166747.1|AI166747 xylem.est.549 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 599
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 209 atatcctttggttcctgggcatga 232
>gb|BI121060.1|BI121060 F027P86Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 524
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 215 atatcctttggttcctgggcatga 238
>gb|BI129073.1|BI129073 G085P56Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 472
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 215 atatcctttggttcctgggcatga 238
>gb|BU827537.1|BU827537 K004P53P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 308
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 242 atatcctttggttcctgggcatga 265
>gb|BU827653.1|BU827653 K006P52P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 560
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 210 atatcctttggttcctgggcatga 233
>gb|BU828333.1|BU828333 K021P11P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 579
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 233 atatcctttggttcctgggcatga 256
>gb|BU831682.1|BU831682 T024E02 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 684
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 239 atatcctttggttcctgggcatga 262
>gb|BU835135.1|BU835135 T070A06 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 273
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 248 atatcctttggttcctgggcatga 271
>gb|BU875989.1|BU875989 V014B11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 523
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 242 atatcctttggttcctgggcatga 265
>gb|BU876318.1|BU876318 V019B10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 596
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 226 atatcctttggttcctgggcatga 249
>gb|BU876646.1|BU876646 V023D02 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 618
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 223 atatcctttggttcctgggcatga 246
>gb|BU876719.1|BU876719 V024E01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 303
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 223 atatcctttggttcctgggcatga 246
>gb|BU877508.1|BU877508 V035D03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 388
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 179 atatcctttggttcctgggcatga 202
>gb|BU877904.1|BU877904 V040G02 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 558
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 212 atatcctttggttcctgggcatga 235
>gb|BU878032.1|BU878032 V042D01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 463
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 218 atatcctttggttcctgggcatga 241
>gb|BU878114.1|BU878114 V043C10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 615
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 220 atatcctttggttcctgggcatga 243
>gb|BU878192.1|BU878192 V044B11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 569
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 223 atatcctttggttcctgggcatga 246
>gb|BU882924.1|BU882924 UM84TA09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 496
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 243 atatcctttggttcctgggcatga 266
>gb|BU895165.1|BU895165 X020B08 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 745
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 246 atatcctttggttcctgggcatga 269
>gb|CK101181.1|CK101181 F027P86.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F027P86 5', mRNA sequence
Length = 490
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 205 atatcctttggttcctgggcatga 228
>gb|CK108342.1|CK108342 GO85P56 Populus tension wood cDNA library Populus tremula x Populus
tremuloides cDNA clone GO85P56 5', mRNA sequence
Length = 478
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 215 atatcctttggttcctgggcatga 238
>gb|CK319578.1|CK319578 B9SP03a04 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 893
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 268 atatcctttggttcctgggcatga 291
>gb|DT474466.1|DT474466 WS0124.BR_A01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0124_A01 5', mRNA sequence
Length = 645
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 239 atatcctttggttcctgggcatga 262
>gb|DT475745.1|DT475745 WS0128.BR_B06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_B06 5', mRNA sequence
Length = 445
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 239 atatcctttggttcctgggcatga 262
>gb|DT497068.1|DT497068 WS01125.BR_G09 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_G09 5', mRNA sequence
Length = 871
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 245 atatcctttggttcctgggcatga 268
>gb|AY126444.1| Populus tremula x Populus tremuloides putative sinapyl alcohol
dehydrogenase mRNA, complete cds
Length = 1392
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
||||||||||||||||||||||||
Sbjct: 237 atatcctttggttcctgggcatga 260
>gb|CK093640.1|CK093640 G126P93.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G126P93 3', mRNA sequence
Length = 822
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 882 atgaaccaacctggaaagtcacttggggtcattggtcttggtggtctgggtcacatggct 941
||||||||||| || || || ||||| || || || || |||||||||||||||||| |
Sbjct: 817 atgaaccaacccggtaaatctcttggagtgatggggctcggtggtctgggtcacatgcca 758
Query: 942 gtgaaatttgg 952
||||| |||||
Sbjct: 757 gtgaagtttgg 747
>gb|CV255604.1|CV255604 WS02414.B21_H21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02414_H21 3', mRNA sequence
Length = 725
Score = 46.1 bits (23), Expect = 0.003
Identities = 87/107 (81%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 877 acaacatgaaccaacctggaaagtcac-ttggggtcattggtcttggtggtctgggtcac 935
|||| ||||||||||| ||||| || | ||||||| ||||| || ||||| || ||||||
Sbjct: 725 acaagatgaaccaacccggaaaatccccttggggtgattggactaggtggcctcggtcac 666
Query: 936 atggctgtgaaatttggtaaagcatttggtcttaaggtcacagtttt 982
|||||||||| || || || || ||||| || | |||||||||||
Sbjct: 665 ttggctgtgaagttcggcaaggcttttggactatatgtcacagtttt 619
>gb|CA924720.1|CA924720 MTU7CL.P9.C01 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 668
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttg 951
||||||||||| |||||| | |||||||||||||
Sbjct: 525 cttggtggtctaggtcacgtagctgtgaaatttg 492
>gb|CX653945.1|CX653945 PO02010C11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02010C11 5', mRNA sequence
Length = 624
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttg 951
||||||||||| |||||| | |||||||||||||
Sbjct: 251 cttggtggtctaggtcacgtagctgtgaaatttg 284
>gb|DT511871.1|DT511871 WS02417.B21_L07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_L07 3', mRNA sequence
Length = 769
Score = 42.1 bits (21), Expect = 0.040
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 930 ggtcacatggctgtgaaatttggtaaagcatttggtcttaaggtcacagtttt 982
||||||||||||||||| ||||| || || ||||| | || |||||||||||
Sbjct: 766 ggtcacatggctgtgaagtttggaaaggcttttggaatgaatgtcacagtttt 714
>gb|BU863318.1|BU863318 S026F06 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 647
Score = 40.1 bits (20), Expect = 0.16
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 539 atatcctttggttcctgggcatga 562
|||||||||||||||||| |||||
Sbjct: 277 atatcctttggttcctggacatga 300
>gb|BU868822.1|BU868822 M122F06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 379
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 543 cctttggttcctgggcatga 562
||||||||||||||||||||
Sbjct: 331 cctttggttcctgggcatga 350
>gb|BU876416.1|BU876416 V020D09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 582
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 543 cctttggttcctgggcatga 562
||||||||||||||||||||
Sbjct: 251 cctttggttcctgggcatga 270
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 90,963
Number of Sequences: 369679
Number of extensions: 90963
Number of successful extensions: 23995
Number of sequences better than 0.5: 58
Number of HSP's better than 0.5 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23919
Number of HSP's gapped (non-prelim): 70
length of query: 991
length of database: 203,408,664
effective HSP length: 19
effective length of query: 972
effective length of database: 196,384,763
effective search space: 190885989636
effective search space used: 190885989636
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)