BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455828.2.1
(1565 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN518130.1|CN518130 GQ0093.B3_F05 GQ009 Populus trichoca... 48 0.001
gb|CN523801.1|CN523801 GQ015M07.T3_E12 GQ015 Populus tricho... 44 0.016
gb|DT507160.1|DT507160 WS02417.BR_I07 PTxD-ICC-N-A-14 Popul... 44 0.016
gb|DT511813.1|DT511813 WS02417.B21_I07 PTxD-ICC-N-A-14 Popu... 44 0.016
gb|BI126467.1|BI126467 I075P93P Populus leaf cDNA library P... 42 0.063
gb|BI126856.1|BI126856 I081P47P Populus leaf cDNA library P... 42 0.063
gb|BI135874.1|BI135874 F059P63Y Populus flower cDNA library... 42 0.063
gb|BU828250.1|BU828250 K019P31P Populus apical shoot cDNA l... 42 0.063
gb|BU871274.1|BU871274 Q028G07 Populus flower cDNA library ... 42 0.063
gb|BU871592.1|BU871592 Q032C06 Populus flower cDNA library ... 42 0.063
gb|CA822879.1|CA822879 R15B06 two-month-old roots from clon... 42 0.063
gb|CF232090.1|CF232090 PtaJXO0006D12D1208 Poplar cDNA libra... 42 0.063
gb|CN519748.1|CN519748 GQ0101.B3_I04 GQ010 Populus trichoca... 42 0.063
gb|CV228420.1|CV228420 WS01910.B21_A14 PT-DX-N-A-10 Populus... 42 0.063
gb|CV247408.1|CV247408 WS01118.B21_A22 PT-P-FL-A-2 Populus ... 42 0.063
gb|CV274662.1|CV274662 WS0173.B21_P22 PTxD-NR-A-8 Populus t... 42 0.063
gb|DN483889.1|DN483889 PSO204B11 Populus tomentiglandulosa ... 42 0.063
gb|DT494313.1|DT494313 WS01118.BR.1_A22 PT-P-FL-A-2 Populus... 42 0.063
gb|DT502446.1|DT502446 WS0133.BR_A07 PTxD-IL-FL-A-4 Populus... 42 0.063
gb|AI166031.1|AI166031 B006P30U Hybrid aspen plasmid librar... 40 0.25
gb|BI125440.1|BI125440 I061P09P Populus leaf cDNA library P... 40 0.25
gb|BU813682.1|BU813682 N013G05 Populus bark cDNA library Po... 40 0.25
gb|BU821764.1|BU821764 UB27CPF03 Populus tremula cambium cD... 40 0.25
gb|BU822760.1|BU822760 UB43DPA10 Populus tremula cambium cD... 40 0.25
gb|BU824306.1|BU824306 UB62BPH04 Populus tremula cambium cD... 40 0.25
gb|BU828697.1|BU828697 K026P94P Populus apical shoot cDNA l... 40 0.25
gb|BU828898.1|BU828898 K030P81P Populus apical shoot cDNA l... 40 0.25
gb|BU830207.1|BU830207 T005C09 Populus apical shoot cDNA li... 40 0.25
gb|BU830843.1|BU830843 T013G12 Populus apical shoot cDNA li... 40 0.25
gb|BU879175.1|BU879175 V056H05 Populus flower cDNA library ... 40 0.25
gb|BU891369.1|BU891369 P049D12 Populus petioles cDNA librar... 40 0.25
gb|CA824986.1|CA824986 R51E03 two-month-old roots from clon... 40 0.25
gb|CF227928.1|CF227928 PtaXM0006E3E0309 Poplar cDNA library... 40 0.25
gb|CF231553.1|CF231553 PtaC0022G9G0913 Poplar cDNA library ... 40 0.25
gb|CF233295.1|CF233295 PtaJXO0021F1F0111 Poplar cDNA librar... 40 0.25
gb|CF235005.1|CF235005 PtaJXT0017G12G1214 Poplar cDNA libra... 40 0.25
gb|CV231418.1|CV231418 WS0194.B21_H19 PT-DX-N-A-10 Populus ... 40 0.25
gb|CV263300.1|CV263300 WS02020.B21_O13 PTxN-IB-N-A-11 Popul... 40 0.25
gb|DN484612.1|DN484612 I069P59.3pR Populus senescing leaves... 40 0.25
gb|DN486663.1|DN486663 P049F11.3pR Populus petioles cDNA li... 40 0.25
gb|DN494071.1|DN494071 I069P59.5pR Populus senescing leaves... 40 0.25
gb|DN496242.1|DN496242 P049F11.5pR Populus petioles cDNA li... 40 0.25
gb|DN498892.1|DN498892 T005C09.5pR Populus shoot meristem c... 40 0.25
gb|DN502171.1|DN502171 V056H05.5pR Populus male catkins cDN... 40 0.25
gb|DT473220.1|DT473220 WS01228.BR_P10 PT-GT-FL-A-3 Populus ... 40 0.25
gb|DT476273.1|DT476273 WS01228.B21_P10 PT-GT-FL-A-3 Populus... 40 0.25
gb|DT505298.1|DT505298 WS01810.C21_I20 PTxD-IL-N-A-9 Populu... 40 0.25
gb|DV464206.1|DV464206 MTUNUL1.P24.E02 NUL Populus fremonti... 40 0.25
gb|DV465075.1|DV465075 MTUNUL1.P34.F10 NUL Populus fremonti... 40 0.25
>gb|CN518130.1|CN518130 GQ0093.B3_F05 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0093_F05 5', mRNA sequence
Length = 491
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacca 986
||||||||||||||||||||||||
Sbjct: 116 ccaccaccgccaccgccaccacca 93
>gb|CN523801.1|CN523801 GQ015M07.T3_E12 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M07_E12 5', mRNA sequence
Length = 760
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 961 ttccaccaccgccaccgccaccacca 986
|||||||||||||||| |||||||||
Sbjct: 44 ttccaccaccgccaccaccaccacca 69
>gb|DT507160.1|DT507160 WS02417.BR_I07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_I07 5', mRNA sequence
Length = 471
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 961 ttccaccaccgccaccgccaccacca 986
||||||| ||||||||||||||||||
Sbjct: 249 ttccaccgccgccaccgccaccacca 274
>gb|DT511813.1|DT511813 WS02417.B21_I07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_I07 3', mRNA sequence
Length = 470
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 961 ttccaccaccgccaccgccaccacca 986
||||||| ||||||||||||||||||
Sbjct: 222 ttccaccgccgccaccgccaccacca 197
>gb|BI126467.1|BI126467 I075P93P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 265
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 965 accaccgccaccgccaccacc 985
|||||||||||||||||||||
Sbjct: 95 accaccgccaccgccaccacc 115
>gb|BI126856.1|BI126856 I081P47P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 105
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 965 accaccgccaccgccaccacc 985
|||||||||||||||||||||
Sbjct: 63 accaccgccaccgccaccacc 83
>gb|BI135874.1|BI135874 F059P63Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 450
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccacca 983
|||||||||||||||||||||
Sbjct: 90 ccaccaccgccaccgccacca 110
>gb|BU828250.1|BU828250 K019P31P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 608
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 965 accaccgccaccgccaccacc 985
|||||||||||||||||||||
Sbjct: 193 accaccgccaccgccaccacc 213
>gb|BU871274.1|BU871274 Q028G07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 722
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 965 accaccgccaccgccaccacc 985
|||||||||||||||||||||
Sbjct: 175 accaccgccaccgccaccacc 195
>gb|BU871592.1|BU871592 Q032C06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 664
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 965 accaccgccaccgccaccacc 985
|||||||||||||||||||||
Sbjct: 249 accaccgccaccgccaccacc 269
>gb|CA822879.1|CA822879 R15B06 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 197
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 965 accaccgccaccgccaccacc 985
|||||||||||||||||||||
Sbjct: 60 accaccgccaccgccaccacc 80
>gb|CF232090.1|CF232090 PtaJXO0006D12D1208 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 694
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 965 accaccgccaccgccaccacc 985
|||||||||||||||||||||
Sbjct: 196 accaccgccaccgccaccacc 216
>gb|CN519748.1|CN519748 GQ0101.B3_I04 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0101_I04 5', mRNA sequence
Length = 615
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 965 accaccgccaccgccaccacc 985
|||||||||||||||||||||
Sbjct: 89 accaccgccaccgccaccacc 109
>gb|CV228420.1|CV228420 WS01910.B21_A14 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01910_A14 3', mRNA sequence
Length = 326
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 965 accaccgccaccgccaccacc 985
|||||||||||||||||||||
Sbjct: 100 accaccgccaccgccaccacc 120
>gb|CV247408.1|CV247408 WS01118.B21_A22 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01118_A22 3', mRNA sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 965 accaccgccaccgccaccacc 985
|||||||||||||||||||||
Sbjct: 581 accaccgccaccgccaccacc 561
>gb|CV274662.1|CV274662 WS0173.B21_P22 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0173_P22 3', mRNA sequence
Length = 808
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 965 accaccgccaccgccaccacc 985
|||||||||||||||||||||
Sbjct: 663 accaccgccaccgccaccacc 643
>gb|DN483889.1|DN483889 PSO204B11 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 692
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 965 accaccgccaccgccaccacc 985
|||||||||||||||||||||
Sbjct: 125 accaccgccaccgccaccacc 145
>gb|DT494313.1|DT494313 WS01118.BR.1_A22 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01118_A22 5', mRNA sequence
Length = 673
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 965 accaccgccaccgccaccacc 985
|||||||||||||||||||||
Sbjct: 93 accaccgccaccgccaccacc 113
>gb|DT502446.1|DT502446 WS0133.BR_A07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0133_A07 5', mRNA sequence
Length = 821
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccacca 983
|||||||||||||||||||||
Sbjct: 92 ccaccaccgccaccgccacca 112
>gb|AI166031.1|AI166031 B006P30U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 275
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 88 ccaccgccaccgccaccacc 69
>gb|BI125440.1|BI125440 I061P09P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 123
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 71 ccaccgccaccgccaccacc 52
>gb|BU813682.1|BU813682 N013G05 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 110
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 49 ccaccgccaccgccaccacc 30
>gb|BU821764.1|BU821764 UB27CPF03 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 487
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 94 ccaccgccaccgccaccacc 75
>gb|BU822760.1|BU822760 UB43DPA10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 181
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 102 ccaccgccaccgccaccacc 83
>gb|BU824306.1|BU824306 UB62BPH04 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 422
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 98 ccaccgccaccgccaccacc 79
>gb|BU828697.1|BU828697 K026P94P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 619
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 111 ccaccgccaccgccaccacc 92
>gb|BU828898.1|BU828898 K030P81P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 491
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 114 ccaccgccaccgccaccacc 95
>gb|BU830207.1|BU830207 T005C09 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 646
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 967 caccgccaccgccaccacca 986
||||||||||||||||||||
Sbjct: 248 caccgccaccgccaccacca 267
>gb|BU830843.1|BU830843 T013G12 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 615
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 132 ccaccgccaccgccaccacc 113
>gb|BU879175.1|BU879175 V056H05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 501
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 184 ccaccgccaccgccaccacc 203
>gb|BU891369.1|BU891369 P049D12 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 566
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 129 ccaccgccaccgccaccacc 110
>gb|CA824986.1|CA824986 R51E03 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 192
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 124 ccaccgccaccgccaccacc 143
>gb|CF227928.1|CF227928 PtaXM0006E3E0309 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 595
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 103 ccaccgccaccgccaccacc 84
>gb|CF231553.1|CF231553 PtaC0022G9G0913 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 66 ccaccgccaccgccaccacc 47
>gb|CF233295.1|CF233295 PtaJXO0021F1F0111 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 720
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 137 ccaccgccaccgccaccacc 118
>gb|CF235005.1|CF235005 PtaJXT0017G12G1214 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 736
Score = 40.1 bits (20), Expect = 0.25
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 343 tcagaactaccctctgaccaggttgagtaccgggcttgatctttagaacaacgtctccac 402
||||||| ||| ||||||||||||| || || || || ||| || ||||| |||||
Sbjct: 445 tcagaaccaccttctgaccaggttgggtgccagggcggaccttgagtacaacatctcctg 386
Query: 403 tgagagttgggacttgaactgtccctcccaaaattgcctg 442
|||||||||| ||||| | || || ||||||||||||||
Sbjct: 385 tgagagttggaacttggatggttccccccaaaattgcctg 346
>gb|CV231418.1|CV231418 WS0194.B21_H19 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0194_H19 3', mRNA sequence
Length = 644
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 557 ccaccgccaccgccaccacc 538
>gb|CV263300.1|CV263300 WS02020.B21_O13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02020_O13 3', mRNA sequence
Length = 822
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 618 ccaccgccaccgccaccacc 599
>gb|DN484612.1|DN484612 I069P59.3pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I069P59 3', mRNA sequence
Length = 455
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 427 ccaccgccaccgccaccacc 446
>gb|DN486663.1|DN486663 P049F11.3pR Populus petioles cDNA library Populus tremula cDNA
clone P049F11 3', mRNA sequence
Length = 617
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 490 ccaccgccaccgccaccacc 509
>gb|DN494071.1|DN494071 I069P59.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I069P59 5', mRNA sequence
Length = 580
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 93 ccaccgccaccgccaccacc 74
>gb|DN496242.1|DN496242 P049F11.5pR Populus petioles cDNA library Populus tremula cDNA
clone P049F11 5', mRNA sequence
Length = 634
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 128 ccaccgccaccgccaccacc 109
>gb|DN498892.1|DN498892 T005C09.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T005C09 5', mRNA sequence
Length = 651
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 967 caccgccaccgccaccacca 986
||||||||||||||||||||
Sbjct: 247 caccgccaccgccaccacca 266
>gb|DN502171.1|DN502171 V056H05.5pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V056H05 5', mRNA sequence
Length = 580
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 190 ccaccgccaccgccaccacc 209
>gb|DT473220.1|DT473220 WS01228.BR_P10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_P10 5', mRNA sequence
Length = 743
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 120 ccaccgccaccgccaccacc 139
>gb|DT476273.1|DT476273 WS01228.B21_P10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_P10 3', mRNA sequence
Length = 743
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 624 ccaccgccaccgccaccacc 605
>gb|DT505298.1|DT505298 WS01810.C21_I20 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01810_I20 3', mRNA sequence
Length = 814
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 615 ccaccgccaccgccaccacc 596
>gb|DV464206.1|DV464206 MTUNUL1.P24.E02 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 801
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 967 caccgccaccgccaccacca 986
||||||||||||||||||||
Sbjct: 695 caccgccaccgccaccacca 714
>gb|DV465075.1|DV465075 MTUNUL1.P34.F10 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 899
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 967 caccgccaccgccaccacca 986
||||||||||||||||||||
Sbjct: 674 caccgccaccgccaccacca 693
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 173,943
Number of Sequences: 369679
Number of extensions: 173943
Number of successful extensions: 47376
Number of sequences better than 0.5: 49
Number of HSP's better than 0.5 without gapping: 48
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 47290
Number of HSP's gapped (non-prelim): 85
length of query: 1565
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1546
effective length of database: 196,384,763
effective search space: 303610843598
effective search space used: 303610843598
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)