BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448489.2.1
(677 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK092568.1|CK092568 G087P77.3pR Populus tension wood cDN... 84 8e-015
gb|CK115173.1|CK115173 Y004D03 Populus infected leaf substr... 84 8e-015
gb|CK087291.1|CK087291 A002P26.3pR Hybrid aspen plasmid lib... 78 5e-013
gb|CK318227.1|CK318227 B9P06h06 Populus stem seasonal libra... 76 2e-012
gb|CV229369.1|CV229369 WS01913.B21_B10 PT-DX-N-A-10 Populus... 76 2e-012
gb|DN491794.1|DN491794 V020F03.3pR Populus male catkins cDN... 70 1e-010
gb|BI129236.1|BI129236 G087P77Y Populus cambium cDNA librar... 62 3e-008
gb|CA926079.1|CA926079 MTU7TL.P9.H01 Aspen leaf cDNA Librar... 46 0.002
gb|CK092956.1|CK092956 G101P62.3pR Populus tension wood cDN... 46 0.002
gb|CX656670.1|CX656670 PO02021H09 Poplar SC cDNA library Po... 46 0.002
gb|BI130191.1|BI130191 G101P62Y Populus cambium cDNA librar... 44 0.007
gb|CK103054.1|CK103054 G101P62.5pR Populus tension wood cDN... 44 0.007
gb|AI161661.1|AI161661 A004P72U Hybrid aspen plasmid librar... 38 0.42
gb|CA822305.1|CA822305 R06D03 two-month-old roots from clon... 38 0.42
gb|CN549763.1|CN549763 GQ0242.B3_I03 GQ024 Populus trichoca... 38 0.42
>gb|CK092568.1|CK092568 G087P77.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G087P77 3', mRNA sequence
Length = 747
Score = 83.8 bits (42), Expect = 8e-015
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 411 acctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgctccactggg 470
|||||||| || |||||||| || |||| ||||||||| || | ||| ||||| || ||
Sbjct: 466 acctggttatcagcaaaattgaaagctctctccatgcttctcaagcaccgctcaaccgga 525
Query: 471 taatccccatagctcccacatggcttgcacccaacaaa 508
|||||||||||||||||||| || ||||||||||||||
Sbjct: 526 taatccccatagctcccacaaggtttgcacccaacaaa 563
>gb|CK115173.1|CK115173 Y004D03 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y004D03 5', mRNA sequence
Length = 518
Score = 83.8 bits (42), Expect = 8e-015
Identities = 84/98 (85%)
Strand = Plus / Minus
Query: 411 acctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgctccactggg 470
|||||||| || |||||||| || |||| ||||||||| || | ||| ||||| || ||
Sbjct: 262 acctggttatcagcaaaattgaaagctctctccatgcttctcaagcaccgctcaaccgga 203
Query: 471 taatccccatagctcccacatggcttgcacccaacaaa 508
|||||||||||||||||||| || ||||||||||||||
Sbjct: 202 taatccccatagctcccacagggtttgcacccaacaaa 165
>gb|CK087291.1|CK087291 A002P26.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A002P26 3', mRNA sequence
Length = 805
Score = 77.8 bits (39), Expect = 5e-013
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 411 acctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgctccactggg 470
||||||||||| |||||||| || |||| ||||||||| || | ||| ||||| |||||
Sbjct: 477 acctggttgtcagcaaaattgaaagctctctccatgcttctcatgcaccgctcgactgga 536
Query: 471 taatccccatagctcccacatggcttgcacccaac 505
|||||||||||||| ||||| || ||||| |||||
Sbjct: 537 taatccccatagctaccacaaggtttgcaaccaac 571
>gb|CK318227.1|CK318227 B9P06h06 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 760
Score = 75.8 bits (38), Expect = 2e-012
Identities = 98/118 (83%)
Strand = Plus / Minus
Query: 411 acctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgctccactggg 470
||||||||||| |||||||| || |||| ||||||||| || | ||| |||| |||||
Sbjct: 601 acctggttgtcagcaaaattgaaagctctctccatgcttctcatgcactgctcgactgga 542
Query: 471 taatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaaggccacc 528
|||||||||||||| ||||| || ||||| ||||| || ||||| || || |||||||
Sbjct: 541 taatccccatagctaccacaaggtttgcaaccaacgaaatgagtgacaaatggccacc 484
>gb|CV229369.1|CV229369 WS01913.B21_B10 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01913_B10 3', mRNA sequence
Length = 817
Score = 75.8 bits (38), Expect = 2e-012
Identities = 98/118 (83%)
Strand = Plus / Plus
Query: 411 acctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgctccactggg 470
||||||||||| |||||||| || |||| ||||||||| || | ||| |||| |||||
Sbjct: 402 acctggttgtcagcaaaattgaaagctctctccatgcttctcatgcactgctcgactgga 461
Query: 471 taatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaaggccacc 528
|||||||||||||| ||||| || ||||| ||||| || ||||| || || |||||||
Sbjct: 462 taatccccatagctaccacaaggtttgcaaccaacgaaatgagtgacaaatggccacc 519
>gb|DN491794.1|DN491794 V020F03.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V020F03 3', mRNA sequence
Length = 685
Score = 69.9 bits (35), Expect = 1e-010
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 411 acctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgctccactggg 470
||||||||||| |||||||| || |||| ||||||||| || | ||| |||| |||||
Sbjct: 207 acctggttgtcagcaaaattgaaagctctctccatgcttctcatgcactgctcgactgga 266
Query: 471 taatccccatagctcccacatggcttgcacccaac 505
|||||||||||||| ||||| || ||||| |||||
Sbjct: 267 taatccccatagctaccacaaggtttgcaaccaac 301
>gb|BI129236.1|BI129236 G087P77Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 393
Score = 61.9 bits (31), Expect = 3e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 442 ccatgctcctgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacc 501
||||||| || | ||| ||||| || || |||||||||||||||||||| || |||||||
Sbjct: 393 ccatgcttctcaagcaccgctcaaccggataatccccatagctcccacaaggtttgcacc 334
Query: 502 caacaaa 508
|||||||
Sbjct: 333 caacaaa 327
>gb|CA926079.1|CA926079 MTU7TL.P9.H01 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 666
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 484 tcccacatggcttgcacccaacaaagtgagt 514
||||||| ||||||||||| |||||||||||
Sbjct: 310 tcccacaaggcttgcaccccacaaagtgagt 340
>gb|CK092956.1|CK092956 G101P62.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G101P62 3', mRNA sequence
Length = 591
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 411 acctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgctccactgg 469
||||||||||| |||||||| || |||| ||||||||| || | ||| ||||| |||||
Sbjct: 530 acctggttgtcagcaaaattgaaagctctctccatgcttctcatgcaccgctcgactgg 588
>gb|CX656670.1|CX656670 PO02021H09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02021H09 5', mRNA sequence
Length = 630
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 484 tcccacatggcttgcacccaacaaagtgagt 514
||||||| ||||||||||| |||||||||||
Sbjct: 315 tcccacaaggcttgcaccccacaaagtgagt 285
>gb|BI130191.1|BI130191 G101P62Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 386
Score = 44.1 bits (22), Expect = 0.007
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 411 acctggttgtcggcaaaattaaacgctcgctccatgct 448
||||||||||| |||||||| || |||| |||||||||
Sbjct: 62 acctggttgtcagcaaaattgaaagctctctccatgct 25
>gb|CK103054.1|CK103054 G101P62.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G101P62 5', mRNA sequence
Length = 557
Score = 44.1 bits (22), Expect = 0.007
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 411 acctggttgtcggcaaaattaaacgctcgctccatgct 448
||||||||||| |||||||| || |||| |||||||||
Sbjct: 62 acctggttgtcagcaaaattgaaagctctctccatgct 25
>gb|AI161661.1|AI161661 A004P72U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 598
Score = 38.2 bits (19), Expect = 0.42
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 484 tcccacatggcttgcacccaacaaagtgagt 514
||||||| || |||||||| |||||||||||
Sbjct: 166 tcccacaaggtttgcaccccacaaagtgagt 136
>gb|CA822305.1|CA822305 R06D03 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 302
Score = 38.2 bits (19), Expect = 0.42
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 484 tcccacatggcttgcacccaacaaagtgagt 514
||||||| || |||||||| |||||||||||
Sbjct: 291 tcccacaaggtttgcaccccacaaagtgagt 261
>gb|CN549763.1|CN549763 GQ0242.B3_I03 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_I03 5', mRNA sequence
Length = 504
Score = 38.2 bits (19), Expect = 0.42
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 484 tcccacatggcttgcacccaacaaagtgagt 514
||||||| || |||||||| |||||||||||
Sbjct: 104 tcccacaaggtttgcaccccacaaagtgagt 74
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,794
Number of Sequences: 369679
Number of extensions: 60794
Number of successful extensions: 16676
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16646
Number of HSP's gapped (non-prelim): 30
length of query: 677
length of database: 203,408,664
effective HSP length: 19
effective length of query: 658
effective length of database: 196,384,763
effective search space: 129221174054
effective search space used: 129221174054
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)