BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441599.2.1
(755 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU832050.1|BU832050 T028H02 Populus apical shoot cDNA li... 38 0.47
gb|CV271746.1|CV271746 WS0155.B21_J02 PTxN-IB-A-6 Populus t... 38 0.47
gb|CV272099.1|CV272099 WS0156.B21.1_K11 PTxN-IB-A-6 Populus... 38 0.47
gb|CV280355.1|CV280355 WS0135.B21_P11 PTxD-IL-FL-A-4 Populu... 38 0.47
gb|CV281190.1|CV281190 WS0181.B21_E04 PTxD-IL-N-A-9 Populus... 38 0.47
gb|CF936491.1|CF936491 PO3006F06 Populus tomentiglandulosa ... 38 0.47
gb|BP932979.1|BP932979 BP932979 full-length enriched poplar... 38 0.47
gb|DT517290.1|DT517290 WS02433.B21_O03 PTxD-ICC-N-A-14 Popu... 38 0.47
gb|DT519048.1|DT519048 WS02440.B21_B17 PTxD-ICC-N-A-14 Popu... 38 0.47
gb|DT522220.1|DT522220 WS02036.B21_G08 PTxN-IB-N-A-11 Popul... 38 0.47
gb|DT522361.1|DT522361 WS02036.B21_M11 PTxN-IB-N-A-11 Popul... 38 0.47
>gb|BU832050.1|BU832050 T028H02 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 327
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 91 tcaaaacaactgaaataat 109
|||||||||||||||||||
Sbjct: 249 tcaaaacaactgaaataat 231
>gb|CV271746.1|CV271746 WS0155.B21_J02 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0155_J02 3', mRNA sequence
Length = 570
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 91 tcaaaacaactgaaataat 109
|||||||||||||||||||
Sbjct: 111 tcaaaacaactgaaataat 129
>gb|CV272099.1|CV272099 WS0156.B21.1_K11 PTxN-IB-A-6 Populus trichocarpa x Populus nigra
cDNA clone WS0156_K11 3', mRNA sequence
Length = 691
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 91 tcaaaacaactgaaataat 109
|||||||||||||||||||
Sbjct: 144 tcaaaacaactgaaataat 162
>gb|CV280355.1|CV280355 WS0135.B21_P11 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_P11 3', mRNA sequence
Length = 891
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 91 tcaaaacaactgaaataat 109
|||||||||||||||||||
Sbjct: 105 tcaaaacaactgaaataat 123
>gb|CV281190.1|CV281190 WS0181.B21_E04 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0181_E04 3', mRNA sequence
Length = 861
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 91 tcaaaacaactgaaataat 109
|||||||||||||||||||
Sbjct: 108 tcaaaacaactgaaataat 126
>gb|CF936491.1|CF936491 PO3006F06 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 878
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 91 tcaaaacaactgaaataat 109
|||||||||||||||||||
Sbjct: 762 tcaaaacaactgaaataat 744
>gb|BP932979.1|BP932979 BP932979 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-044_K20.r 3', mRNA sequence
Length = 518
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 91 tcaaaacaactgaaataat 109
|||||||||||||||||||
Sbjct: 150 tcaaaacaactgaaataat 168
>gb|DT517290.1|DT517290 WS02433.B21_O03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02433_O03 3', mRNA sequence
Length = 817
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 91 tcaaaacaactgaaataat 109
|||||||||||||||||||
Sbjct: 108 tcaaaacaactgaaataat 126
>gb|DT519048.1|DT519048 WS02440.B21_B17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_B17 3', mRNA sequence
Length = 719
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 91 tcaaaacaactgaaataat 109
|||||||||||||||||||
Sbjct: 108 tcaaaacaactgaaataat 126
>gb|DT522220.1|DT522220 WS02036.B21_G08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02036_G08 3', mRNA sequence
Length = 574
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 91 tcaaaacaactgaaataat 109
|||||||||||||||||||
Sbjct: 108 tcaaaacaactgaaataat 126
>gb|DT522361.1|DT522361 WS02036.B21_M11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02036_M11 3', mRNA sequence
Length = 889
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 91 tcaaaacaactgaaataat 109
|||||||||||||||||||
Sbjct: 108 tcaaaacaactgaaataat 126
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 84,962
Number of Sequences: 369679
Number of extensions: 84962
Number of successful extensions: 26061
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26050
Number of HSP's gapped (non-prelim): 11
length of query: 755
length of database: 203,408,664
effective HSP length: 19
effective length of query: 736
effective length of database: 196,384,763
effective search space: 144539185568
effective search space used: 144539185568
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)