BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441276.2.1
(1796 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF232911.1|CF232911 PtaJXO0017C12C1206 Poplar cDNA libra... 58 1e-006
gb|CN519772.1|CN519772 GQ0106.B3_E05 GQ010 Populus trichoca... 42 0.073
gb|CN549499.1|CN549499 GQ0241.B3_M10 GQ024 Populus trichoca... 40 0.29
gb|CV225824.1|CV225824 WS0162.B21_I02 PT-DX-A-7 Populus tri... 40 0.29
gb|CV227390.1|CV227390 WS0167.B21_A20 PT-DX-A-7 Populus tri... 40 0.29
gb|CV246174.1|CV246174 WS0111.B21_I15 PT-P-FL-A-2 Populus t... 40 0.29
gb|CV248677.1|CV248677 WS01121.B21_J03 PT-P-FL-A-2 Populus ... 40 0.29
gb|CV252000.1|CV252000 WS0119.B21_A05 PT-P-FL-A-2 Populus t... 40 0.29
gb|CV254316.1|CV254316 WS0224.B21_M18 PTxD-ICC-A-12 Populus... 40 0.29
gb|CV268707.1|CV268707 WS0206.B21_D16 PTxN-IB-N-A-11 Populu... 40 0.29
gb|CX174500.1|CX174500 D04_69-116_08.ab1 leaf inoculated wi... 40 0.29
gb|DT493496.1|DT493496 WS0111.BR_I15 PT-P-FL-A-2 Populus tr... 40 0.29
gb|DT495816.1|DT495816 WS01121.BR_J03 PT-P-FL-A-2 Populus t... 40 0.29
gb|DT499672.1|DT499672 WS9991.BR_A05 PT-P-FL-A-2 Populus tr... 40 0.29
gb|DT517265.1|DT517265 WS02433.B21_M22 PTxD-ICC-N-A-14 Popu... 40 0.29
gb|DT518322.1|DT518322 WS02436.B21_N04 PTxD-ICC-N-A-14 Popu... 40 0.29
gb|DT520549.1|DT520549 WS02447.B21_N19 PTxD-ICC-N-A-14 Popu... 40 0.29
>gb|CF232911.1|CF232911 PtaJXO0017C12C1206 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 740
Score = 58.0 bits (29), Expect = 1e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 964 gaaatacttcttgaccttgcaagaccttttggaatct 1000
|||||| ||||||||||||||||||||| ||||||||
Sbjct: 85 gaaatatttcttgaccttgcaagaccttatggaatct 49
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttgtggaat 1229
||||||||||||||||||||| ||||||
Sbjct: 78 ttcttgaccttgcaagaccttatggaat 51
>gb|CN519772.1|CN519772 GQ0106.B3_E05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0106_E05 5', mRNA sequence
Length = 779
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagacc 1220
|||||||||||||||||||||
Sbjct: 472 aattcttgaccttgcaagacc 452
>gb|CN549499.1|CN549499 GQ0241.B3_M10 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_M10 5', mRNA sequence
Length = 868
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||| ||||||||||
Sbjct: 138 cttcttgaccttgtaagacctttt 161
>gb|CV225824.1|CV225824 WS0162.B21_I02 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_I02
3', mRNA sequence
Length = 349
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||| ||||||||||
Sbjct: 75 cttcttgaccttgtaagacctttt 52
>gb|CV227390.1|CV227390 WS0167.B21_A20 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_A20
3', mRNA sequence
Length = 763
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||| ||||||||||
Sbjct: 468 cttcttgaccttgtaagacctttt 445
>gb|CV246174.1|CV246174 WS0111.B21_I15 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0111_I15 3', mRNA sequence
Length = 727
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||| ||||||||||
Sbjct: 594 cttcttgaccttgtaagacctttt 571
>gb|CV248677.1|CV248677 WS01121.B21_J03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01121_J03 3', mRNA sequence
Length = 713
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||| ||||||||||
Sbjct: 460 cttcttgaccttgtaagacctttt 437
>gb|CV252000.1|CV252000 WS0119.B21_A05 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0119_A05 3', mRNA sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||| ||||||||||
Sbjct: 655 cttcttgaccttgtaagacctttt 632
>gb|CV254316.1|CV254316 WS0224.B21_M18 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0224_M18 3', mRNA sequence
Length = 731
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||| ||||||||||
Sbjct: 468 cttcttgaccttgtaagacctttt 445
>gb|CV268707.1|CV268707 WS0206.B21_D16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0206_D16 3', mRNA sequence
Length = 734
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||| ||||||||||
Sbjct: 539 cttcttgaccttgtaagacctttt 516
>gb|CX174500.1|CX174500 D04_69-116_08.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 620
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||| ||||||||||
Sbjct: 280 cttcttgaccttgtaagacctttt 303
>gb|DT493496.1|DT493496 WS0111.BR_I15 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_I15
5', mRNA sequence
Length = 533
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||| ||||||||||
Sbjct: 319 cttcttgaccttgtaagacctttt 342
>gb|DT495816.1|DT495816 WS01121.BR_J03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01121_J03 5', mRNA sequence
Length = 780
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||| ||||||||||
Sbjct: 321 cttcttgaccttgtaagacctttt 344
>gb|DT499672.1|DT499672 WS9991.BR_A05 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0119_A05
5', mRNA sequence
Length = 595
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||| ||||||||||
Sbjct: 309 cttcttgaccttgtaagacctttt 332
>gb|DT517265.1|DT517265 WS02433.B21_M22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02433_M22 3', mRNA sequence
Length = 426
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||| ||||||||||
Sbjct: 155 cttcttgaccttgtaagacctttt 132
>gb|DT518322.1|DT518322 WS02436.B21_N04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_N04 3', mRNA sequence
Length = 924
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||| ||||||||||
Sbjct: 659 cttcttgaccttgtaagacctttt 636
>gb|DT520549.1|DT520549 WS02447.B21_N19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02447_N19 3', mRNA sequence
Length = 802
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||| ||||||||||
Sbjct: 468 cttcttgaccttgtaagacctttt 445
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 220,304
Number of Sequences: 369679
Number of extensions: 220304
Number of successful extensions: 60192
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60127
Number of HSP's gapped (non-prelim): 65
length of query: 1796
length of database: 203,408,664
effective HSP length: 20
effective length of query: 1776
effective length of database: 196,015,084
effective search space: 348122789184
effective search space used: 348122789184
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)