BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2440918.2.1
         (1469 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU863061.1|BU863061  S023D03 Populus imbibed seed cDNA li...    42   0.059
gb|DN488687.1|DN488687  S023D03.3pR Populus imbibed seed cDN...    42   0.059
gb|DN498397.1|DN498397  S023D03.5pR Populus imbibed seed cDN...    42   0.059

>gb|BU863061.1|BU863061 S023D03 Populus imbibed seed cDNA library Populus tremula cDNA 5
            prime, mRNA sequence
          Length = 581

 Score = 42.1 bits (21), Expect = 0.059
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1255 tcttttggttcctttcctcttgttt 1279
            |||||||||||||||||| ||||||
Sbjct: 469  tcttttggttcctttccttttgttt 493



>gb|DN488687.1|DN488687 S023D03.3pR Populus imbibed seed cDNA library Populus tremula cDNA
            clone S023D03 3', mRNA sequence
          Length = 512

 Score = 42.1 bits (21), Expect = 0.059
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 1255 tcttttggttcctttcctcttgttt 1279
            |||||||||||||||||| ||||||
Sbjct: 26   tcttttggttcctttccttttgttt 2



>gb|DN498397.1|DN498397 S023D03.5pR Populus imbibed seed cDNA library Populus tremula cDNA
            clone S023D03 5', mRNA sequence
          Length = 594

 Score = 42.1 bits (21), Expect = 0.059
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1255 tcttttggttcctttcctcttgttt 1279
            |||||||||||||||||| ||||||
Sbjct: 485  tcttttggttcctttccttttgttt 509



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 124,137
Number of Sequences: 369679
Number of extensions: 124137
Number of successful extensions: 31638
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31635
Number of HSP's gapped (non-prelim): 3
length of query: 1469
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1450
effective length of database: 196,384,763
effective search space: 284757906350
effective search space used: 284757906350
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)