BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2440419.2.1
         (616 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CV238945.1|CV238945  WS0128.B21.1_M03 PT-GT-FL-A-3 Populu...    44   0.006
gb|CV250183.1|CV250183  WS01126.B21_L05 PT-P-FL-A-2 Populus ...    44   0.006
gb|DT497514.1|DT497514  WS01126.BR_L05 PT-P-FL-A-2 Populus t...    44   0.006

>gb|CV238945.1|CV238945 WS0128.B21.1_M03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
           WS0128_M03 3', mRNA sequence
          Length = 591

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 226 ggctcgatatggcagtggaaggccca 251
           |||||||||||||| |||||||||||
Sbjct: 337 ggctcgatatggcaatggaaggccca 362



>gb|CV250183.1|CV250183 WS01126.B21_L05 PT-P-FL-A-2 Populus trichocarpa cDNA clone
           WS01126_L05 3', mRNA sequence
          Length = 513

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 226 ggctcgatatggcagtggaaggccca 251
           |||||||||||||| |||||||||||
Sbjct: 269 ggctcgatatggcaatggaaggccca 294



>gb|DT497514.1|DT497514 WS01126.BR_L05 PT-P-FL-A-2 Populus trichocarpa cDNA clone
           WS01126_L05 5', mRNA sequence
          Length = 530

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 226 ggctcgatatggcagtggaaggccca 251
           |||||||||||||| |||||||||||
Sbjct: 262 ggctcgatatggcaatggaaggccca 237



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,878
Number of Sequences: 369679
Number of extensions: 28878
Number of successful extensions: 7878
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7875
Number of HSP's gapped (non-prelim): 3
length of query: 616
length of database: 203,408,664
effective HSP length: 19
effective length of query: 597
effective length of database: 196,384,763
effective search space: 117241703511
effective search space used: 117241703511
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)