BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437714.2.1
(1649 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN519402.1|CN519402 GQ0104.B3_F09 GQ010 Populus trichoca... 147 2e-033
gb|CX173515.1|CX173515 E04_69-54_10.ab1 leaf inoculated wit... 147 2e-033
gb|DV464513.1|DV464513 MTUNUL1.P28.E01 NUL Populus fremonti... 141 1e-031
gb|CX185645.1|CX185645 H11_45-90_15.ab1 leaf inoculated wit... 125 6e-027
gb|CA927036.1|CA927036 MTU6CR.P4.B07 Aspen root cDNA Librar... 123 2e-026
gb|CA930036.1|CA930036 MTU2CA.P6.C05 Aspen apex cDNA Librar... 123 2e-026
gb|CA930190.1|CA930190 MTU2CA.P8.D01 Aspen apex cDNA Librar... 123 2e-026
gb|DV464888.1|DV464888 MTUNUL1.P32.B06 NUL Populus fremonti... 115 6e-024
gb|BU892089.1|BU892089 P059C01 Populus petioles cDNA librar... 109 3e-022
gb|CV267796.1|CV267796 WS02032.B21_L12 PTxN-IB-N-A-11 Popul... 103 2e-020
gb|CA929855.1|CA929855 MTU2CA.P3.F10 Aspen apex cDNA Librar... 101 8e-020
gb|CX175200.1|CX175200 F06_69-97_12.ab1 leaf inoculated wit... 100 3e-019
gb|CK115841.1|CK115841 Y016A05 Populus infected leaf substr... 88 1e-015
gb|CV243012.1|CV243012 WS02516.B21.1_K13 PT-MB-N-A-15 Popul... 84 2e-014
gb|CV236552.1|CV236552 WS01224.B21.1_I14 PT-GT-FL-A-3 Popul... 64 2e-008
gb|CX181385.1|CX181385 F10_45-55_12.ab1 leaf inoculated wit... 62 7e-008
gb|CX182779.1|CX182779 G04_45-45_14.ab1 leaf inoculated wit... 62 7e-008
gb|DT477489.1|DT477489 WS02520.BR_B10 PT-MB-N-A-15 Populus ... 60 3e-007
gb|DT482537.1|DT482537 WS02520.B21_B10 PT-MB-N-A-15 Populus... 60 3e-007
gb|CV130453.1|CV130453 B9P04a03 Populus stem seasonal libra... 52 7e-005
gb|CV265115.1|CV265115 WS02026.B21_F23 PTxN-IB-N-A-11 Popul... 52 7e-005
gb|DT505781.1|DT505781 WS01811.C21_N11 PTxD-IL-N-A-9 Populu... 52 7e-005
gb|AC149544.1| Populus trichocarpa clone Pop1-69J1, complet... 52 7e-005
gb|BU886286.1|BU886286 R043C11 Populus root cDNA library Po... 48 0.001
gb|BU894038.1|BU894038 X001C12 Populus wood cDNA library Po... 48 0.001
gb|CK116914.1|CK116914 B019P69 Hybrid aspen plasmid library... 48 0.001
gb|DV465858.1|DV465858 MTUNUL1.P44.A10 NUL Populus fremonti... 46 0.004
gb|BU830932.1|BU830932 T015A03 Populus apical shoot cDNA li... 44 0.017
gb|BU833990.1|BU833990 T055C05 Populus apical shoot cDNA li... 44 0.017
gb|BU896206.1|BU896206 X037C02 Populus wood cDNA library Po... 44 0.017
gb|CF231108.1|CF231108 PtaC0017D7D0707 Poplar cDNA library ... 44 0.017
gb|CK092566.1|CK092566 G087P72.3pR Populus tension wood cDN... 44 0.017
gb|CK097050.1|CK097050 UB37DPA12.3pR Populus active cambium... 44 0.017
gb|CV284025.1|CV284025 WS0188.B21_O23 PTxD-IL-N-A-9 Populus... 44 0.017
gb|DN499425.1|DN499425 T057F12.5pR Populus shoot meristem c... 44 0.017
gb|BU890230.1|BU890230 P033F11 Populus petioles cDNA librar... 42 0.067
gb|BU890374.1|BU890374 P035H07 Populus petioles cDNA librar... 42 0.067
gb|BU893097.1|BU893097 P073C08 Populus petioles cDNA librar... 42 0.067
gb|AJ777228.1|AJ777228 AJ777228 Populus euphratica root 3-6... 42 0.067
gb|CV231831.1|CV231831 WS0195.B21_L03 PT-DX-N-A-10 Populus ... 42 0.067
gb|CV253632.1|CV253632 WS0222.B21_I14 PTxD-ICC-A-12 Populus... 42 0.067
gb|CV267382.1|CV267382 WS02031.B21_J14 PTxN-IB-N-A-11 Popul... 42 0.067
gb|CV272993.1|CV272993 WS0171.B21_F09 PTxD-NR-A-8 Populus t... 42 0.067
gb|CX654383.1|CX654383 PO02003B12 Poplar SC cDNA library Po... 42 0.067
gb|BP932874.1|BP932874 BP932874 full-length enriched poplar... 42 0.067
gb|BP936864.1|BP936864 BP936864 full-length enriched poplar... 42 0.067
gb|DN492296.1|DN492296 X001C12.3pR Populus wood cDNA librar... 42 0.067
gb|DT479680.1|DT479680 WS02526.BR_K05 PT-MB-N-A-15 Populus ... 42 0.067
gb|DT520256.1|DT520256 WS02447.B21_A16 PTxD-ICC-N-A-14 Popu... 42 0.067
gb|DV464922.1|DV464922 MTUNUL1.P32.E11 NUL Populus fremonti... 42 0.067
gb|AI166086.1|AI166086 B007P72U Hybrid aspen plasmid librar... 40 0.26
gb|BU811827.1|BU811827 UL89TA06 Populus leaf cDNA library P... 40 0.26
gb|BU829085.1|BU829085 K034P53P Populus apical shoot cDNA l... 40 0.26
gb|BU833638.1|BU833638 T050F10 Populus apical shoot cDNA li... 40 0.26
gb|BU834612.1|BU834612 T063E08 Populus apical shoot cDNA li... 40 0.26
gb|BU837119.1|BU837119 T094H01 Populus apical shoot cDNA li... 40 0.26
gb|BU837228.1|BU837228 T096C09 Populus apical shoot cDNA li... 40 0.26
gb|BU879611.1|BU879611 V062C11 Populus flower cDNA library ... 40 0.26
gb|BU879800.1|BU879800 UM37TF02 Populus flower cDNA library... 40 0.26
gb|CA821643.1|CA821643 RSH05E12 two-month-old roots from cl... 40 0.26
gb|CA821958.1|CA821958 R02A10 two-month-old roots from clon... 40 0.26
gb|CF228434.1|CF228434 PtaXM0012H7H0715 Poplar cDNA library... 40 0.26
gb|CK110097.1|CK110097 N052H05 Populus bark cDNA library Po... 40 0.26
gb|CN522353.1|CN522353 GQ0124.B3_G18 GQ012 Populus trichoca... 40 0.26
gb|AJ776126.1|AJ776126 AJ776126 Populus euphratica root 3-6... 40 0.26
gb|CV248300.1|CV248300 WS01120.B21_D02 PT-P-FL-A-2 Populus ... 40 0.26
gb|CV254595.1|CV254595 WS0241.B21_K12 PTxD-ICC-N-A-14 Popul... 40 0.26
gb|CV276240.1|CV276240 WS0179.B21_B18 PTxD-NR-A-8 Populus t... 40 0.26
gb|CX171373.1|CX171373 G11_69-81_13.ab1 leaf inoculated wit... 40 0.26
gb|CX175462.1|CX175462 B11_69-38_03.ab1 leaf inoculated wit... 40 0.26
gb|DN490902.1|DN490902 UM37TF02.3pR Populus female catkins ... 40 0.26
gb|DN500907.1|DN500907 UM37TF02.5pR Populus female catkins ... 40 0.26
gb|DT473957.1|DT473957 WS01230.BR_E13 PT-GT-FL-A-3 Populus ... 40 0.26
gb|DT475515.1|DT475515 WS0127.BR_F19 PT-GT-FL-A-3 Populus t... 40 0.26
gb|DT476637.1|DT476637 WS01230.B21_E13 PT-GT-FL-A-3 Populus... 40 0.26
gb|DT489873.1|DT489873 WS02543.B21_G18 PT-MB-N-A-15 Populus... 40 0.26
gb|DT493424.1|DT493424 WS0111.BR_F07 PT-P-FL-A-2 Populus tr... 40 0.26
gb|DT493961.1|DT493961 WS01117.BR_A02 PT-P-FL-A-2 Populus t... 40 0.26
gb|DT495343.1|DT495343 WS01120.BR_D02 PT-P-FL-A-2 Populus t... 40 0.26
gb|DT501857.1|DT501857 WS01314.BR_H16 PTxD-IL-FL-A-4 Populu... 40 0.26
gb|DT515552.1|DT515552 WS02427.B21_N24 PTxD-ICC-N-A-14 Popu... 40 0.26
>gb|CN519402.1|CN519402 GQ0104.B3_F09 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0104_F09 5', mRNA sequence
Length = 860
Score = 147 bits (74), Expect = 2e-033
Identities = 245/302 (81%)
Strand = Plus / Minus
Query: 1162 cttcctcgaaacatgaactcgtagacaagcagccgatggtcatcttcgcagcaatatccg 1221
|||||||| ||||| ||||| || ||||| | || || ||||| ||||| ||||| ||
Sbjct: 597 cttcctcggaacataaactcataaacaagtaacctgtgatcatcctcgcaacaataacca 538
Query: 1222 atcaacttcaccaaatttggatgcctcaactgccccaggcagttaacctcggtaagccat 1281
||||||||||||||||| |||||||| | ||||||||| |||| || ||||||||||||
Sbjct: 537 atcaacttcaccaaattaggatgcctaagctgccccagaaagtttacttcggtaagccat 478
Query: 1282 tctctgtgcccttgatgtccatctttgttgagcaccttgactgcaacaggcagtgacttc 1341
|| | || |||||| | || ||||| ||||| |||||||| ||||| || || || ||
Sbjct: 477 tcacgatggccttgaagaccctctttattgagaaccttgacagcaactggaagagatttg 418
Query: 1342 agcccaaccctgacattttcatctatgtaacccttgtaaacggtcccaaatcctccttcg 1401
|| |||||||||||||| ||||| ||||| || || ||||| || |||||||| |||||
Sbjct: 417 aggccaaccctgacattctcatcaatgtagcctttataaacagttccaaatccaccttcc 358
Query: 1402 ccaagaacataatcaacacggaagctctttgtgattgtctctagctcaaacaatgtgaag 1461
||||||| |||||| || || ||||| || |||||||| |||||| |||| ||||||
Sbjct: 357 ccaagaatgtaatcagagcgaaaactcttggtaattgtctcaagctcatacaaagtgaag 298
Query: 1462 gc 1463
||
Sbjct: 297 gc 296
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 962 cttttgcgaggccaaagtcagacagtttggcagtataatcggagtccag 1010
||||||| || ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 797 cttttgcaagcccaaaatcagaaagcttggcagtataatcagagtccag 749
>gb|CX173515.1|CX173515 E04_69-54_10.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 700
Score = 147 bits (74), Expect = 2e-033
Identities = 245/302 (81%)
Strand = Plus / Minus
Query: 1162 cttcctcgaaacatgaactcgtagacaagcagccgatggtcatcttcgcagcaatatccg 1221
|||||||| ||||| ||||| || ||||| | || || ||||| ||||| ||||| ||
Sbjct: 340 cttcctcggaacataaactcataaacaagtaacctgtgatcatcctcgcaacaataacca 281
Query: 1222 atcaacttcaccaaatttggatgcctcaactgccccaggcagttaacctcggtaagccat 1281
||||||||||||||||| |||||||| | ||||||||| |||| || ||||||||||||
Sbjct: 280 atcaacttcaccaaattaggatgcctaagctgccccagaaagtttacttcggtaagccat 221
Query: 1282 tctctgtgcccttgatgtccatctttgttgagcaccttgactgcaacaggcagtgacttc 1341
|| | || |||||| | || ||||| ||||| |||||||| ||||| || || || ||
Sbjct: 220 tcacgatggccttgaagaccctctttattgagaaccttgacagcaactggaagagatttg 161
Query: 1342 agcccaaccctgacattttcatctatgtaacccttgtaaacggtcccaaatcctccttcg 1401
|| |||||||||||||| ||||| ||||| || || ||||| || |||||||| |||||
Sbjct: 160 aggccaaccctgacattctcatcaatgtagcctttataaacagttccaaatccaccttcc 101
Query: 1402 ccaagaacataatcaacacggaagctctttgtgattgtctctagctcaaacaatgtgaag 1461
||||||| |||||| || || ||||| || |||||||| |||||| |||| ||||||
Sbjct: 100 ccaagaatgtaatcagagcgaaaactcttggtaattgtctcaagctcatacaaagtgaag 41
Query: 1462 gc 1463
||
Sbjct: 40 gc 39
Score = 99.6 bits (50), Expect = 3e-019
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 865 gcagtcaagtgaccggtcatcacatattcaggggcagcataaccgtaggttcccatcacc 924
||||||| ||| || ||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 637 gcagtcaggtggccagtcattacatattcaggggcagcataaccataggtacccatcact 578
Query: 925 cgtgtcgacacatgcgtctgatcaccttcagggccatcttttgcgaggccaaagtcagac 984
|| || || ||||| |||| || |||| || ||| ||||||| || ||||| |||||
Sbjct: 577 cgagttgatacatgagtctcgtcgccttgcggtccagcttttgcaagcccaaaatcagaa 518
Query: 985 agtttggcagtataatcggagtccag 1010
|| |||||||||||||| ||||||||
Sbjct: 517 agcttggcagtataatcagagtccag 492
>gb|DV464513.1|DV464513 MTUNUL1.P28.E01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 504
Score = 141 bits (71), Expect = 1e-031
Identities = 244/302 (80%)
Strand = Plus / Minus
Query: 1162 cttcctcgaaacatgaactcgtagacaagcagccgatggtcatcttcgcagcaatatccg 1221
|||||||| ||||| ||||| || ||||| | || || ||||| ||||| ||||| ||
Sbjct: 470 cttcctcggaacataaactcataaacaagtaacctgtgatcatcctcgcaacaataccca 411
Query: 1222 atcaacttcaccaaatttggatgcctcaactgccccaggcagttaacctcggtaagccat 1281
||||||||||||||||| |||||| | | ||||||||| |||| || ||||||||||||
Sbjct: 410 atcaacttcaccaaattaggatgcntaagctgccccagaaagtttacttcggtaagccat 351
Query: 1282 tctctgtgcccttgatgtccatctttgttgagcaccttgactgcaacaggcagtgacttc 1341
|| | || |||||| | || ||||| ||||| |||||||| ||||| || || || ||
Sbjct: 350 tcacgatggccttgaagaccctctttattgagaaccttgacagcaactggaagagatttg 291
Query: 1342 agcccaaccctgacattttcatctatgtaacccttgtaaacggtcccaaatcctccttcg 1401
|| |||||||||||||| ||||| ||||| || || ||||| || |||||||| |||||
Sbjct: 290 aggccaaccctgacattctcatcaatgtagcctttataaacagttccaaatccaccttcc 231
Query: 1402 ccaagaacataatcaacacggaagctctttgtgattgtctctagctcaaacaatgtgaag 1461
||||||| |||||| || || ||||| || |||||||| |||||| |||| ||||||
Sbjct: 230 ccaagaatgtaatcagagcgaaaactcttggtaattgtctcaagctcatacaaagtgaag 171
Query: 1462 gc 1463
||
Sbjct: 170 gc 169
>gb|CX185645.1|CX185645 H11_45-90_15.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 660
Score = 125 bits (63), Expect = 6e-027
Identities = 204/251 (81%)
Strand = Plus / Minus
Query: 1213 caatatccgatcaacttcaccaaatttggatgcctcaactgccccaggcagttaacctcg 1272
||||| || ||||||||||||||||| |||||| | | ||||||||| |||| || |||
Sbjct: 657 caataaccaatcaacttcaccaaattaggatgcttaagctgccccagaaagtttacttcg 598
Query: 1273 gtaagccattctctgtgcccttgatgtccatctttgttgagcaccttgactgcaacaggc 1332
||||||||||| | || |||||| | || ||||| ||||| |||||||| ||||| ||
Sbjct: 597 gtaagccattcacgatggccttgaagaccctctttattgagaaccttgacagcaactgga 538
Query: 1333 agtgacttcagcccaaccctgacattttcatctatgtaacccttgtaaacggtcccaaat 1392
|| || || || |||||||||||||| ||||| ||||| || || ||||| || ||||||
Sbjct: 537 agagatttgaggccaaccctgacattctcatcaatgtagcctttataaacagttccaaat 478
Query: 1393 cctccttcgccaagaacataatcaacacggaagctctttgtgattgtctctagctcaaac 1452
|| ||||| ||||||| |||||| || || ||||| || |||||||| |||||| ||
Sbjct: 477 ccaccttccccaagaatgtaatcagagcgaaaactcttggtaattgtctcaagctcatac 418
Query: 1453 aatgtgaaggc 1463
|| ||||||||
Sbjct: 417 aaagtgaaggc 407
>gb|CA927036.1|CA927036 MTU6CR.P4.B07 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 690
Score = 123 bits (62), Expect = 2e-026
Identities = 242/302 (80%)
Strand = Plus / Plus
Query: 1162 cttcctcgaaacatgaactcgtagacaagcagccgatggtcatcttcgcagcaatatccg 1221
|||||||| ||||| ||||| || ||||| | || || ||||| ||||| ||||| |||
Sbjct: 245 cttcctcggaacataaactcataaacaagtaacctgtgatcatcctcgcaacaatacccg 304
Query: 1222 atcaacttcaccaaatttggatgcctcaactgccccaggcagttaacctcggtaagccat 1281
|||||||||||||||| ||||||| | |||||||| |||| || ||||||||||||
Sbjct: 305 atcaacttcaccaaatgaggatgccgaagctgccccaaaaagtttacttcggtaagccat 364
Query: 1282 tctctgtgcccttgatgtccatctttgttgagcaccttgactgcaacaggcagtgacttc 1341
|| | || |||||| | || ||||| ||||| |||||||| ||||| || || || ||
Sbjct: 365 tcacgatggccttgaagaccctctttattgagaaccttgacagcaactggaagagatttg 424
Query: 1342 agcccaaccctgacattttcatctatgtaacccttgtaaacggtcccaaatcctccttcg 1401
|| |||||||||||||| ||||| ||||| || || ||||| || |||||||| |||||
Sbjct: 425 aggccaaccctgacattctcatcaatgtagcctttataaacagttccaaatccaccttcc 484
Query: 1402 ccaagaacataatcaacacggaagctctttgtgattgtctctagctcaaacaatgtgaag 1461
||||||| |||||| || || ||||| || || ||||| |||||| |||| ||||||
Sbjct: 485 ccaagaatgtaatcagagcgaaaactcttggtaatagtctcaagctcatacaaagtgaag 544
Query: 1462 gc 1463
||
Sbjct: 545 gc 546
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 962 cttttgcgaggccaaagtcagacagtttggcagtataatcggagtccag 1010
||||||| || ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 45 cttttgcaagcccaaaatcagaaagcttggcagtataatcagagtccag 93
>gb|CA930036.1|CA930036 MTU2CA.P6.C05 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 676
Score = 123 bits (62), Expect = 2e-026
Identities = 242/302 (80%)
Strand = Plus / Plus
Query: 1162 cttcctcgaaacatgaactcgtagacaagcagccgatggtcatcttcgcagcaatatccg 1221
|||||||| ||||| ||||| || ||||| | || || ||||| ||||| ||||| ||
Sbjct: 245 cttcctcggaacataaactcataaacaagtaacctgtgatcatcctcgcaacaataccca 304
Query: 1222 atcaacttcaccaaatttggatgcctcaactgccccaggcagttaacctcggtaagccat 1281
||||||||||||||||| |||||||| | ||||||||| |||| || || |||||||||
Sbjct: 305 atcaacttcaccaaattaggatgccttagctgccccagaaagttcacttccgtaagccat 364
Query: 1282 tctctgtgcccttgatgtccatctttgttgagcaccttgactgcaacaggcagtgacttc 1341
|| | ||| |||||| | || ||| | || || |||||||| ||||| || | || ||
Sbjct: 365 tcacggtggccttgaagaccctctctatttagaaccttgacagcaactggaatagatttg 424
Query: 1342 agcccaaccctgacattttcatctatgtaacccttgtaaacggtcccaaatcctccttcg 1401
|| |||||||||||||| ||||| ||||| || || ||||| || ||||| ||||||||
Sbjct: 425 aggccaaccctgacattctcatcaatgtagcctttataaaccgttccaaaccctccttcc 484
Query: 1402 ccaagaacataatcaacacggaagctctttgtgattgtctctagctcaaacaatgtgaag 1461
||||||| |||||| || |||||||| || || ||||| |||||| |||| ||||||
Sbjct: 485 ccaagaatgtaatcagagcgaaagctcttggtaatagtctcgagctcatacaaagtgaag 544
Query: 1462 gc 1463
||
Sbjct: 545 gc 546
>gb|CA930190.1|CA930190 MTU2CA.P8.D01 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 599
Score = 123 bits (62), Expect = 2e-026
Identities = 242/302 (80%)
Strand = Plus / Minus
Query: 1162 cttcctcgaaacatgaactcgtagacaagcagccgatggtcatcttcgcagcaatatccg 1221
|||||||| ||||| ||||| || ||||| | || || ||||| ||||| ||||| ||
Sbjct: 526 cttcctcggaacataaactcataaacaagtaacctgtgatcatcctcgcaacaataccca 467
Query: 1222 atcaacttcaccaaatttggatgcctcaactgccccaggcagttaacctcggtaagccat 1281
||||||||||||||||| |||||||| | ||||||||| |||| || || |||||||||
Sbjct: 466 atcaacttcaccaaattaggatgccttagctgccccagaaagttcacttccgtaagccat 407
Query: 1282 tctctgtgcccttgatgtccatctttgttgagcaccttgactgcaacaggcagtgacttc 1341
|| | ||| |||||| | || ||| | || || |||||||| ||||| || | || ||
Sbjct: 406 tcacggtggccttgaagaccctctctatttagaaccttgacagcaactggaatagatttg 347
Query: 1342 agcccaaccctgacattttcatctatgtaacccttgtaaacggtcccaaatcctccttcg 1401
|| |||||||||||||| ||||| ||||| || || ||||| || ||||| ||||||||
Sbjct: 346 aggccaaccctgacattctcatcaatgtagcctttataaaccgttccaaaccctccttcc 287
Query: 1402 ccaagaacataatcaacacggaagctctttgtgattgtctctagctcaaacaatgtgaag 1461
||||||| |||||| || |||||||| || || ||||| |||||| |||| ||||||
Sbjct: 286 ccaagaatgtaatcagagcgaaagctcttggtaatagtctcgagctcatacaaagtgaag 227
Query: 1462 gc 1463
||
Sbjct: 226 gc 225
>gb|DV464888.1|DV464888 MTUNUL1.P32.B06 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 922
Score = 115 bits (58), Expect = 6e-024
Identities = 241/302 (79%)
Strand = Plus / Minus
Query: 1162 cttcctcgaaacatgaactcgtagacaagcagccgatggtcatcttcgcagcaatatccg 1221
|||||||| ||||| ||||| || ||||||| || || ||||| || || ||||| ||
Sbjct: 714 cttcctcggaacataaactcataaacaagcaacctgtgatcatcctcacaacaataccca 655
Query: 1222 atcaacttcaccaaatttggatgcctcaactgccccaggcagttaacctcggtaagccat 1281
||||||||||||||||| |||||||| | ||||||||| |||| || || |||||||||
Sbjct: 654 atcaacttcaccaaattaggatgccttagctgccccagaaagttcacttccgtaagccat 595
Query: 1282 tctctgtgcccttgatgtccatctttgttgagcaccttgactgcaacaggcagtgacttc 1341
|| | ||| |||||| | || ||| | || || |||||||| ||||| || | || ||
Sbjct: 594 tcacggtggccttgaagaccctctctatttagaaccttgacagcaactggaatagatttg 535
Query: 1342 agcccaaccctgacattttcatctatgtaacccttgtaaacggtcccaaatcctccttcg 1401
|| |||||||||||||| ||||| ||||| || || ||||| || ||||| ||||||||
Sbjct: 534 aggccaaccctgacattctcatcaatgtagcctttataaaccgttccaaaccctccttcc 475
Query: 1402 ccaagaacataatcaacacggaagctctttgtgattgtctctagctcaaacaatgtgaag 1461
||||||| |||||| || |||||||| || || ||||| || ||| |||| ||||||
Sbjct: 474 ccaagaatgtaatcagagcgaaagctcttggtaatagtctcgagttcatacaaagtgaag 415
Query: 1462 gc 1463
||
Sbjct: 414 gc 413
>gb|BU892089.1|BU892089 P059C01 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 643
Score = 109 bits (55), Expect = 3e-022
Identities = 211/263 (80%)
Strand = Plus / Minus
Query: 1201 tcatcttcgcagcaatatccgatcaacttcaccaaatttggatgcctcaactgccccagg 1260
||||| ||||| ||||| ||||||||||||||||||| |||||| | |||||||||
Sbjct: 580 tcatcctcgcaacaatacccgatcaacttcaccaaatgaggatgctgaagctgccccaga 521
Query: 1261 cagttaacctcggtaagccattctctgtgcccttgatgtccatctttgttgagcaccttg 1320
|||| | |||||||||||||| | || |||||| | || ||||| ||||| ||||||
Sbjct: 520 aagtttagttcggtaagccattcacgatggccttgaagaccctctttattgagaaccttg 461
Query: 1321 actgcaacaggcagtgacttcagcccaaccctgacattttcatctatgtaacccttgtaa 1380
|| ||||| || || || || || |||||||||||||| ||||| ||||| || || |||
Sbjct: 460 acagcaactggaagagatttgaggccaaccctgacattctcatcaatgtagcctttataa 401
Query: 1381 acggtcccaaatcctccttcgccaagaacataatcaacacggaagctctttgtgattgtc 1440
|| || |||||||| ||||| ||||||| |||||| || || ||||| || || |||
Sbjct: 400 acagttccaaatccaccttccccaagaatgtaatcagagcgaaaactcttggtaatagtc 341
Query: 1441 tctagctcaaacaatgtgaaggc 1463
|| |||||| |||| ||||||||
Sbjct: 340 tcaagctcatacaaagtgaaggc 318
>gb|CV267796.1|CV267796 WS02032.B21_L12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02032_L12 3', mRNA sequence
Length = 938
Score = 103 bits (52), Expect = 2e-020
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 847 ctgtacacgtcactccgagcagtcaagtgaccggtcatcacatattcaggggcagcataa 906
||||||||||| || | ||||||| ||| || ||||| |||||||||||||||||||||
Sbjct: 675 ctgtacacgtcgcttcttgcagtcaggtggccagtcattacatattcaggggcagcataa 734
Query: 907 ccgtaggttcccatcacccgtgtcgacacatgcgtctgatcaccttcagggccatctttt 966
|| ||||| |||||||| || || || ||||| |||| || |||| || ||| |||||
Sbjct: 735 ccataggtacccatcactcgagttgatacatgagtctcgtcgccttgcggtccagctttt 794
Query: 967 gcgaggccaaagtcagacagtttggcagtataatcggagtccag 1010
|| || ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 795 gcaagcccaaaatcagaaagcttggcagtataatcagagtccag 838
>gb|CA929855.1|CA929855 MTU2CA.P3.F10 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 492
Score = 101 bits (51), Expect = 8e-020
Identities = 210/263 (79%)
Strand = Plus / Minus
Query: 1201 tcatcttcgcagcaatatccgatcaacttcaccaaatttggatgcctcaactgccccagg 1260
||||| ||||| ||||| || ||||||||||||||||| |||||||| | |||||||||
Sbjct: 487 tcatcctcgcaacaatacccaatcaacttcaccaaattaggatgccttagctgccccaga 428
Query: 1261 cagttaacctcggtaagccattctctgtgcccttgatgtccatctttgttgagcaccttg 1320
|||| || || ||||||||||| | ||| |||||| | || ||| | || || ||||||
Sbjct: 427 aagttcacttccgtaagccattcacggtggccttgaagaccctctctatttagaaccttg 368
Query: 1321 actgcaacaggcagtgacttcagcccaaccctgacattttcatctatgtaacccttgtaa 1380
|| | ||| || | || || || |||||||||||||| ||||| ||||| || || |||
Sbjct: 367 acagtaactggaatagatttgaggccaaccctgacattctcatcaatgtagcctttataa 308
Query: 1381 acggtcccaaatcctccttcgccaagaacataatcaacacggaagctctttgtgattgtc 1440
|| || ||||| |||||||| |||| || |||||| || |||||||| || || |||
Sbjct: 307 accgttccaaaccctccttccccaaaaatgtaatcagagcgaaagctcttggtaatagtc 248
Query: 1441 tctagctcaaacaatgtgaaggc 1463
|| |||||| |||| ||||||||
Sbjct: 247 tcgagctcatacaaagtgaaggc 225
>gb|CX175200.1|CX175200 F06_69-97_12.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 631
Score = 99.6 bits (50), Expect = 3e-019
Identities = 188/234 (80%)
Strand = Plus / Minus
Query: 1230 caccaaatttggatgcctcaactgccccaggcagttaacctcggtaagccattctctgtg 1289
||||||||| |||||||| | ||||||||| |||| || || ||||||||||| | |||
Sbjct: 631 caccaaattaggatgccttagctgccccagaaagttcacttccgtaagccattcacggtg 572
Query: 1290 cccttgatgtccatctttgttgagcaccttgactgcaacaggcagtgacttcagcccaac 1349
|||||| | || ||| | || || |||||||| ||||| || || || || || |||||
Sbjct: 571 gccttgaagaccctctctatttagaaccttgacagcaactggaagagatttgaggccaac 512
Query: 1350 cctgacattttcatctatgtaacccttgtaaacggtcccaaatcctccttcgccaagaac 1409
||||||||| ||||| ||||| || || ||||| || ||||| |||||||| |||||||
Sbjct: 511 cctgacattctcatcaatgtagcctttataaaccgttccaaaccctccttccccaagaat 452
Query: 1410 ataatcaacacggaagctctttgtgattgtctctagctcaaacaatgtgaaggc 1463
||||||| || |||||||| || || ||||| || ||| |||| ||||||||
Sbjct: 451 ataatcagagcgaaagctcttggtaatagtctcgagttcatacaaagtgaaggc 398
>gb|CK115841.1|CK115841 Y016A05 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y016A05 5', mRNA sequence
Length = 551
Score = 87.7 bits (44), Expect = 1e-015
Identities = 191/241 (79%)
Strand = Plus / Minus
Query: 1223 tcaacttcaccaaatttggatgcctcaactgccccaggcagttaacctcggtaagccatt 1282
||||||||||||||| ||||||| | ||||||||| |||| || |||||||||||||
Sbjct: 551 tcaacttcaccaaatgaggatgccgaagctgccccagaaagtttacttcggtaagccatt 492
Query: 1283 ctctgtgcccttgatgtccatctttgttgagcaccttgactgcaacaggcagtgacttca 1342
| | || |||||| | || ||||| |||| |||||||| ||||| || || || || |
Sbjct: 491 cacgatggccttgaagaccctctttactgagaaccttgacagcaactggaagagatttga 432
Query: 1343 gcccaaccctgacattttcatctatgtaacccttgtaaacggtcccaaatcctccttcgc 1402
| |||||||||||||| ||||| ||||| || || ||||| || ||| |||| ||||| |
Sbjct: 431 ggccaaccctgacattctcatcaatgtagcctttataaacagttccanatccaccttccc 372
Query: 1403 caagaacataatcaacacggaagctctttgtgattgtctctagctcaaacaatgtgaagg 1462
|||||| |||||| || | ||||| || || ||||| |||||| |||| |||||||
Sbjct: 371 caagaatgtaatcagagcgaanactcttggtnatagtctcaagctcatacaaagtgaagg 312
Query: 1463 c 1463
|
Sbjct: 311 c 311
>gb|CV243012.1|CV243012 WS02516.B21.1_K13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02516_K13 3', mRNA sequence
Length = 915
Score = 83.8 bits (42), Expect = 2e-014
Identities = 120/146 (82%)
Strand = Plus / Plus
Query: 865 gcagtcaagtgaccggtcatcacatattcaggggcagcataaccgtaggttcccatcacc 924
||||||| ||| || ||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 722 gcagtcaggtggccagtcattacatattcaggggcagcataaccataggtacccatcact 781
Query: 925 cgtgtcgacacatgcgtctgatcaccttcagggccatcttttgcgaggccaaagtcagac 984
|| || || ||||| |||| || |||| || ||| ||||| || ||||| |||||
Sbjct: 782 cgagttgatacatgagtctcgtcgccttgcggtccagctttttgcagcccaaaatcagaa 841
Query: 985 agtttggcagtataatcggagtccag 1010
|| |||||||||||||| ||||||||
Sbjct: 842 agcttggcagtataatcagagtccag 867
>gb|CV236552.1|CV236552 WS01224.B21.1_I14 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01224_I14 3', mRNA sequence
Length = 922
Score = 63.9 bits (32), Expect = 2e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 865 gcagtcaagtgaccggtcatcacatattcaggggcagcataaccgtaggttcccatcacc 924
||||||| ||| || ||||| ||||||||||| ||||||||||| || || ||||||||
Sbjct: 792 gcagtcaggtggccagtcattacatattcaggagcagcataaccataagtacccatcact 851
Query: 925 cgtgtcgacacatgcgtctgatcaccttcagggccatcttttgc 968
|| || || ||||| |||| ||| |||| ||| ||| |||||||
Sbjct: 852 cgagttgatacatgagtctcatcgccttgaggtccagcttttgc 895
Score = 52.0 bits (26), Expect = 7e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 610 ctcatgagcggcctggcctttgggttctggctcaggcagtagaacgcgaggctgcagg 667
||||| || ||||| |||||||| ||||||||||| |||||| | || ||||||||||
Sbjct: 537 ctcatcaggggccttgcctttggattctggctcagacagtagtatgccaggctgcagg 594
>gb|CX181385.1|CX181385 F10_45-55_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 555
Score = 61.9 bits (31), Expect = 7e-008
Identities = 124/155 (80%)
Strand = Plus / Minus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgc 939
||||| ||||||||||| || ||||| || || || ||||| || ||||| ||||||||
Sbjct: 474 gtcattacatattcaggagctgcatatccatatgtccccataacacgtgttgacacatga 415
Query: 940 gtctgatcaccttcagggccatcttttgcgaggccaaagtcagacagtttggcagtataa 999
|||||||| || || |||||||| || || ||||| || || ||||| ||| || ||
Sbjct: 414 gtctgatctcccatcggtccatctttagcaagtccaaaatctgaaagttttgcattaaaa 355
Query: 1000 tcggagtccagcagaatgtttgatgtcttgaaatc 1034
|| || || |||| ||||||||||||||||||||
Sbjct: 354 tccgaatcaagcaagatgtttgatgtcttgaaatc 320
>gb|CX182779.1|CX182779 G04_45-45_14.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 657
Score = 61.9 bits (31), Expect = 7e-008
Identities = 124/155 (80%)
Strand = Plus / Minus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgc 939
||||| ||||||||||| || ||||| || || || ||||| || ||||| ||||||||
Sbjct: 202 gtcattacatattcaggagctgcatatccatatgtccccataacacgtgttgacacatga 143
Query: 940 gtctgatcaccttcagggccatcttttgcgaggccaaagtcagacagtttggcagtataa 999
|||||||| || || |||||||| || || ||||| || || ||||| ||| || ||
Sbjct: 142 gtctgatctcccatcggtccatctttagcaagtccaaaatctgaaagttttgcattaaaa 83
Query: 1000 tcggagtccagcagaatgtttgatgtcttgaaatc 1034
|| || || |||| ||||||||||||||||||||
Sbjct: 82 tccgaatcaagcaagatgtttgatgtcttgaaatc 48
>gb|DT477489.1|DT477489 WS02520.BR_B10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_B10 5', mRNA sequence
Length = 875
Score = 60.0 bits (30), Expect = 3e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 867 agtcaagtgaccggtcatcacatattcaggggcagcataaccgtaggttcccat 920
|||||| || || |||||||||||||| ||||||||||| || |||||||||||
Sbjct: 509 agtcaaatgtccagtcatcacatattctggggcagcatagccataggttcccat 456
>gb|DT482537.1|DT482537 WS02520.B21_B10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_B10 3', mRNA sequence
Length = 848
Score = 60.0 bits (30), Expect = 3e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 867 agtcaagtgaccggtcatcacatattcaggggcagcataaccgtaggttcccat 920
|||||| || || |||||||||||||| ||||||||||| || |||||||||||
Sbjct: 743 agtcaaatgtccagtcatcacatattctggggcagcatagccataggttcccat 796
>gb|CV130453.1|CV130453 B9P04a03 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 653
Score = 52.0 bits (26), Expect = 7e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 610 ctcatgagcggcctggcctttgggttctggctcaggcagtagaacgcgaggctgcagg 667
||||| || ||||| |||||||| ||||||||||| |||||| | || ||||||||||
Sbjct: 177 ctcatcaggggccttgcctttggattctggctcagacagtagtatgccaggctgcagg 120
>gb|CV265115.1|CV265115 WS02026.B21_F23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02026_F23 3', mRNA sequence
Length = 572
Score = 52.0 bits (26), Expect = 7e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 610 ctcatgagcggcctggcctttgggttctggctcaggcagtagaacgcgaggctgcagg 667
||||| || ||||| |||||||| ||||||||||| |||||| | || ||||||||||
Sbjct: 463 ctcatcaggggccttgcctttggattctggctcagacagtagtatgccaggctgcagg 520
>gb|DT505781.1|DT505781 WS01811.C21_N11 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01811_N11 3', mRNA sequence
Length = 854
Score = 52.0 bits (26), Expect = 7e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 610 ctcatgagcggcctggcctttgggttctggctcaggcagtagaacgcgaggctgcagg 667
||||| || ||||| |||||||| ||||||||||| |||||| | || ||||||||||
Sbjct: 645 ctcatcaggggccttgcctttggattctggctcagacagtagtatgccaggctgcagg 702
>gb|AC149544.1| Populus trichocarpa clone Pop1-69J1, complete sequence
Length = 94430
Score = 52.0 bits (26), Expect = 7e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 886 acatattcaggggcagcataaccgtaggttcccatcac 923
|||||||||||||||||||| || ||||| ||||||||
Sbjct: 7710 acatattcaggggcagcatatccataggtccccatcac 7673
Score = 50.1 bits (25), Expect = 3e-004
Identities = 85/105 (80%)
Strand = Plus / Minus
Query: 1143 gaataagtggttttctagacttcctcgaaacatgaactcgtagacaagcagccgatggtc 1202
||||||||| || |||| ||| |||||| ||| || || |||||||| || || | ||
Sbjct: 7122 gaataagtgattctctaaactgcctcgaggcataaattcatagacaagaagtcgttcttc 7063
Query: 1203 atcttcgcagcaatatccgatcaacttcaccaaatttggatgcct 1247
||||| |||||||| || ||||| || |||||||||||||||||
Sbjct: 7062 ttcttcacagcaataaccaatcaatttaaccaaatttggatgcct 7018
>gb|BU886286.1|BU886286 R043C11 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 616
Score = 48.1 bits (24), Expect = 0.001
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgc 939
||||| ||||||||||| ||||| || || || || ||||| || ||||| ||||||||
Sbjct: 125 gtcattacatattcaggagcagcgtatccatatgtccccataacacgtgttgacacatga 66
Query: 940 gtctgatc 947
||||||||
Sbjct: 65 gtctgatc 58
>gb|BU894038.1|BU894038 X001C12 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 713
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 949 ccttcagggccatcttttgcgaggccaaagtcagacagtttggcagtataatcggagtcc 1008
|||| ||| ||| ||||||| || ||||| || || || || || ||||| || |||||
Sbjct: 455 ccttgaggcccagcttttgctagaccaaaatctgaaagctttgctgtatattccgagtca 396
Query: 1009 agcagaatgtttgatgtcttgaaatctctgta 1040
|||| ||||||||||||||| ||||| |||||
Sbjct: 395 agcaaaatgtttgatgtcttaaaatccctgta 364
>gb|CK116914.1|CK116914 B019P69 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B019P69 5', mRNA sequence
Length = 437
Score = 48.1 bits (24), Expect = 0.001
Identities = 156/200 (78%)
Strand = Plus / Minus
Query: 841 ccgaagctgtacacgtcactccgagcagtcaagtgaccggtcatcacatattcaggggca 900
||||||||||| || |||||| || |||||||| || ||||||||||| || || |||
Sbjct: 336 ccgaagctgtaaacatcactcttagatgtcaagtgtcctgtcatcacatactctggagca 277
Query: 901 gcataaccgtaggttcccatcacccgtgtcgacacatgcgtctgatcaccttcagggcca 960
||||| || || || || | |||| || || ||||| || | || |||| ||| |||
Sbjct: 276 gcatagccatatgtcccaacaaccctggtagaaacatgagttttgtccccttgaggccca 217
Query: 961 tcttttgcgaggccaaagtcagacagtttggcagtataatcggagtccagcagaatgttt 1020
||||||| || ||||| || || || || || ||||| || ||||| |||| |||||||
Sbjct: 216 gcttttgctagaccaaaatctgaaagctttgctgtatattccgagtcaagcaaaatgttt 157
Query: 1021 gatgtcttgaaatctctgta 1040
|||||||| ||||| |||||
Sbjct: 156 gatgtcttaaaatccctgta 137
>gb|DV465858.1|DV465858 MTUNUL1.P44.A10 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 896
Score = 46.1 bits (23), Expect = 0.004
Identities = 95/119 (79%)
Strand = Plus / Minus
Query: 874 tgaccggtcatcacatattcaggggcagcataaccgtaggttcccatcacccgtgtcgac 933
||||| ||||| ||||| || ||||| || ||||| || ||||||||||| || || ||
Sbjct: 832 tgacctgtcattacatactcgggggctgcgtaaccatatgttcccatcacgcgggtagat 773
Query: 934 acatgcgtctgatcaccttcagggccatcttttgcgaggccaaagtcagacagtttggc 992
||||| |||| || ||||| || |||||||| || || ||||| ||||| || |||||
Sbjct: 772 acatgagtcttgtccccttctggaccatctttggcaagtccaaaatcagaaagcttggc 714
>gb|BU830932.1|BU830932 T015A03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 685
Score = 44.1 bits (22), Expect = 0.017
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 610 ctcatgagcggcctggcctttgggttctggctcaggcagtagaacgcgaggctgcagg 667
||||| || ||||| ||||| || ||||||||||| |||||| | || ||||||||||
Sbjct: 227 ctcatcaggggccttgccttcggattctggctcagacagtagtatgccaggctgcagg 170
>gb|BU833990.1|BU833990 T055C05 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 304
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 157 agactgactgactgactgattg 178
||||||||||||||||||||||
Sbjct: 199 agactgactgactgactgattg 178
>gb|BU896206.1|BU896206 X037C02 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 241
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 157 agactgactgactgactgattg 178
||||||||||||||||||||||
Sbjct: 114 agactgactgactgactgattg 93
>gb|CF231108.1|CF231108 PtaC0017D7D0707 Poplar cDNA library from cambial zone Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 570
Score = 44.1 bits (22), Expect = 0.017
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1003 gagtccagcagaatgtttgatgtcttgaaatctctgta 1040
||||| |||| ||||||||| ||||| |||||||||||
Sbjct: 286 gagtcaagcaaaatgtttgacgtcttaaaatctctgta 249
>gb|CK092566.1|CK092566 G087P72.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G087P72 3', mRNA sequence
Length = 807
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 agactgactgactgactgattg 178
||||||||||||||||||||||
Sbjct: 593 agactgactgactgactgattg 614
>gb|CK097050.1|CK097050 UB37DPA12.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB37DPA12 3', mRNA sequence
Length = 662
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 agactgactgactgactgattg 178
||||||||||||||||||||||
Sbjct: 338 agactgactgactgactgattg 359
>gb|CV284025.1|CV284025 WS0188.B21_O23 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0188_O23 3', mRNA sequence
Length = 844
Score = 44.1 bits (22), Expect = 0.017
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 aaagcaaagcaaagcaaagcaggcaa 44
||||||||||||||||||||| ||||
Sbjct: 114 aaagcaaagcaaagcaaagcaagcaa 139
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 aaagcaaagcaaagcaaagca 39
|||||||||||||||||||||
Sbjct: 109 aaagcaaagcaaagcaaagca 129
>gb|DN499425.1|DN499425 T057F12.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T057F12 5', mRNA sequence
Length = 863
Score = 44.1 bits (22), Expect = 0.017
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 1192 agccgatggtcatcttcgcagcaatatccgatcaacttcaccaaatttggatgcctcaac 1251
||||| ||||||||||| |||| || |||||||| ||||| | ||||||||| ||||
Sbjct: 612 agccggtggtcatcttctaagcagtagccgatcaatttcacaagatttggatgatacaac 553
Query: 1252 tgccccaggcagtt 1265
|| |||||| ||||
Sbjct: 552 tggcccaggtagtt 539
>gb|BU890230.1|BU890230 P033F11 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 488
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 aaagcaaagcaaagcaaagca 39
|||||||||||||||||||||
Sbjct: 85 aaagcaaagcaaagcaaagca 105
>gb|BU890374.1|BU890374 P035H07 Populus petioles cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 446
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 aaagcaaagcaaagcaaagca 39
|||||||||||||||||||||
Sbjct: 17 aaagcaaagcaaagcaaagca 37
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 aagcaaagcaaagcaaagca 39
||||||||||||||||||||
Sbjct: 13 aagcaaagcaaagcaaagca 32
>gb|BU893097.1|BU893097 P073C08 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 497
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 aaagcaaagcaaagcaaagca 39
|||||||||||||||||||||
Sbjct: 86 aaagcaaagcaaagcaaagca 106
>gb|AJ777228.1|AJ777228 AJ777228 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400025A08F1, mRNA sequence
Length = 560
Score = 42.1 bits (21), Expect = 0.067
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 958 ccatcttttgcgaggccaaagtcagacagtttggcagtataatcggagtccagcagaatg 1017
|||||||| || || ||||| || || ||||| ||| || |||| || ||||||| |||
Sbjct: 500 ccatctttagcaagtccaaaatctgaaagttttgcattaaaatctgaatccagcaagatg 441
Query: 1018 tttgatgtcttgaaatc 1034
|| ||||||||||||||
Sbjct: 440 ttagatgtcttgaaatc 424
>gb|CV231831.1|CV231831 WS0195.B21_L03 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0195_L03 3', mRNA sequence
Length = 329
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 aaagcaaagcaaagcaaagca 39
|||||||||||||||||||||
Sbjct: 259 aaagcaaagcaaagcaaagca 279
>gb|CV253632.1|CV253632 WS0222.B21_I14 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0222_I14 3', mRNA sequence
Length = 693
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 aaagcaaagcaaagcaaagca 39
|||||||||||||||||||||
Sbjct: 109 aaagcaaagcaaagcaaagca 129
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 aaagcaaagcaaagcaaagc 38
||||||||||||||||||||
Sbjct: 114 aaagcaaagcaaagcaaagc 133
>gb|CV267382.1|CV267382 WS02031.B21_J14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_J14 3', mRNA sequence
Length = 933
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 333 tagcagcagcagcagcatgca 353
|||||||||||||||||||||
Sbjct: 158 tagcagcagcagcagcatgca 138
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 195 cagcagcagcatgcatgcat 214
||||||||||||||||||||
Sbjct: 152 cagcagcagcatgcatgcat 133
>gb|CV272993.1|CV272993 WS0171.B21_F09 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0171_F09 3', mRNA sequence
Length = 842
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 aaagcaaagcaaagcaaagca 39
|||||||||||||||||||||
Sbjct: 54 aaagcaaagcaaagcaaagca 74
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 aaagcaaagcaaagcaaagc 38
||||||||||||||||||||
Sbjct: 59 aaagcaaagcaaagcaaagc 78
>gb|CX654383.1|CX654383 PO02003B12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02003B12 5', mRNA sequence
Length = 584
Score = 42.1 bits (21), Expect = 0.067
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 817 gtcaggagctccagcaggaccacgccgaagctgtacacgtcactc 861
||||| ||||| |||||||| || || || |||||||||||||||
Sbjct: 139 gtcagaagctcaagcaggacaacaccaaaactgtacacgtcactc 95
>gb|BP932874.1|BP932874 BP932874 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-042_H10.r 3', mRNA sequence
Length = 678
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 333 tagcagcagcagcagcatgca 353
|||||||||||||||||||||
Sbjct: 193 tagcagcagcagcagcatgca 173
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 195 cagcagcagcatgcatgcat 214
||||||||||||||||||||
Sbjct: 187 cagcagcagcatgcatgcat 168
>gb|BP936864.1|BP936864 BP936864 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-097_J15.r 3', mRNA sequence
Length = 464
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 333 tagcagcagcagcagcatgca 353
|||||||||||||||||||||
Sbjct: 190 tagcagcagcagcagcatgca 170
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 195 cagcagcagcatgcatgcat 214
||||||||||||||||||||
Sbjct: 184 cagcagcagcatgcatgcat 165
>gb|DN492296.1|DN492296 X001C12.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X001C12 3', mRNA sequence
Length = 569
Score = 42.1 bits (21), Expect = 0.067
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 868 gtcaagtgaccggtcatcacatattcaggggcagcataacc 908
|||||||| || ||||||||||| || || |||||||||||
Sbjct: 518 gtcaagtgtcctgtcatcacatactctggagcagcataacc 558
>gb|DT479680.1|DT479680 WS02526.BR_K05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02526_K05 5', mRNA sequence
Length = 876
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 aaagcaaagcaaagcaaagca 39
|||||||||||||||||||||
Sbjct: 4 aaagcaaagcaaagcaaagca 24
>gb|DT520256.1|DT520256 WS02447.B21_A16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02447_A16 3', mRNA sequence
Length = 906
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 aaagcaaagcaaagcaaagca 39
|||||||||||||||||||||
Sbjct: 54 aaagcaaagcaaagcaaagca 74
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 aaagcaaagcaaagcaaagc 38
||||||||||||||||||||
Sbjct: 59 aaagcaaagcaaagcaaagc 78
>gb|DV464922.1|DV464922 MTUNUL1.P32.E11 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 965
Score = 42.1 bits (21), Expect = 0.067
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 1192 agccgatggtcatcttcgcagcaatatccgatcaacttcaccaaatttggatg 1244
||||| ||||||||||| ||||||| |||||||| || || | |||||||||
Sbjct: 845 agccggtggtcatcttctaagcaatagccgatcaattttactagatttggatg 793
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 202,668
Number of Sequences: 369679
Number of extensions: 202668
Number of successful extensions: 65811
Number of sequences better than 0.5: 81
Number of HSP's better than 0.5 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65538
Number of HSP's gapped (non-prelim): 199
length of query: 1649
length of database: 203,408,664
effective HSP length: 20
effective length of query: 1629
effective length of database: 196,015,084
effective search space: 319308571836
effective search space used: 319308571836
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)