BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437629.2.1
(1264 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN520269.1|CN520269 GQ0107.B3_N05 GQ010 Populus trichoca... 198 4e-049
gb|DN488101.1|DN488101 R032D11.3pR Populus root cDNA librar... 170 8e-041
gb|CV269592.1|CV269592 WS0208.B21_K22 PTxN-IB-N-A-11 Populu... 157 1e-036
gb|DT500890.1|DT500890 PX0019.BR_L02 PT-X-FL-A-1 Populus tr... 143 2e-032
gb|CV252969.1|CV252969 PX0019.B21.1_L02 PT-X-FL-A-1 Populus... 137 1e-030
gb|BU829781.1|BU829781 K067P31P Populus apical shoot cDNA l... 135 5e-030
gb|CV275864.1|CV275864 WS0177.B21_O02 PTxD-NR-A-8 Populus t... 129 3e-028
gb|DN490693.1|DN490693 UL76PH09.3pR Populus cold stressed l... 123 2e-026
gb|CX186076.1|CX186076 E12_45-26_10.ab1 leaf inoculated wit... 98 1e-018
gb|BP926366.1|BP926366 BP926366 full-length enriched poplar... 78 9e-013
gb|CV252774.1|CV252774 PX0015.B21_O23 PT-X-FL-A-1 Populus t... 76 4e-012
gb|BP933938.1|BP933938 BP933938 full-length enriched poplar... 70 2e-010
gb|CF118835.1|CF118835 MTU10CS.P10.A02 Aspen stem cDNA Libr... 64 1e-008
gb|AJ780529.1|AJ780529 AJ780529 Populus euphratica leaf 3-6... 64 1e-008
gb|AJ780730.1|AJ780730 AJ780730 Populus euphratica leaf 3-6... 64 1e-008
gb|BU810845.1|BU810845 UL76PH09 Populus leaf cDNA library P... 62 6e-008
gb|DN500684.1|DN500684 UL76PH09.5pR Populus cold stressed l... 62 6e-008
gb|DT500586.1|DT500586 PX0015.BR_O23 PT-X-FL-A-1 Populus tr... 60 2e-007
gb|BU867805.1|BU867805 M104E10 Populus flower cDNA library ... 58 9e-007
gb|DT508835.1|DT508835 WS02422.BR_B02 PTxD-ICC-N-A-14 Popul... 58 9e-007
gb|CA824730.1|CA824730 R47C07 two-month-old roots from clon... 50 2e-004
gb|CV242270.1|CV242270 WS02514.B21.1_J18 PT-MB-N-A-15 Popul... 50 2e-004
gb|DT520899.1|DT520899 WS02448.B21_N17 PTxD-ICC-N-A-14 Popu... 50 2e-004
gb|DT520901.1|DT520901 WS02448.B21_N19 PTxD-ICC-N-A-14 Popu... 50 2e-004
gb|BU826676.1|BU826676 UK123TD11 Populus apical shoot cDNA ... 42 0.051
gb|BU870532.1|BU870532 Q013G04 Populus flower cDNA library ... 42 0.051
gb|BU889261.1|BU889261 P018F09 Populus petioles cDNA librar... 42 0.051
gb|BU891061.1|BU891061 P045D09 Populus petioles cDNA librar... 42 0.051
gb|DT470091.1|DT470091 WS01919.C21_N14 PT-DX-N-A-10 Populus... 42 0.051
gb|DT488257.1|DT488257 WS02535.B21_O22 PT-MB-N-A-15 Populus... 42 0.051
gb|DT513443.1|DT513443 WS02422.B21_B02 PTxD-ICC-N-A-14 Popu... 42 0.051
gb|BU890505.1|BU890505 P037H07 Populus petioles cDNA librar... 40 0.20
gb|DT517892.1|DT517892 WS02435.B21_J19 PTxD-ICC-N-A-14 Popu... 40 0.20
>gb|CN520269.1|CN520269 GQ0107.B3_N05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_N05 5', mRNA sequence
Length = 772
Score = 198 bits (100), Expect = 4e-049
Identities = 451/568 (79%)
Strand = Plus / Minus
Query: 663 attccttctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaatatg 722
|||||||||||||| || | ||| |||||||| || |||| || |||||||| |||||
Sbjct: 706 attccttctcgaattgacagatttggtcttataatgtccttggaattcaccaggaatata 647
Query: 723 tcaccgatgtatagatgatttgttggcacatacacactacacagttcttcatcgcctttg 782
||||| || |||||||| ||||| || ||| | |||||||||| |||||||| | ||
Sbjct: 646 tcaccaatatatagatggtttgtcggaacaaaaacactacacaactcttcatcttcatta 587
Query: 783 tcagtctgaaggaccacagttgatgttatgaatccaaatgcatattcaccaattcgtgga 842
|| ||||||||| || |||||||| ||||| ||||| ||||||||||| | || |||
Sbjct: 586 tctctctgaaggattactgttgatgtgatgaaaccaaaagcatattcacctacacgagga 527
Query: 843 tgacgaattattgcaacttctttgaaagcagtcgtattttgatctggtgaaattgcagtg 902
||| |||| ||||| || ||||| ||||| || ||||| |||||||| ||||||||||
Sbjct: 526 tgatgaataattgccacctctttaaaagctgtggtattctgatctggagaaattgcagca 467
Query: 903 ctgacttgctttgatgctgaatatatatgtcttacaaatggcattttctttataaaccac 962
|| | ||| || || |||||||||| ||| | ||||| |||||| ||||||||||||
Sbjct: 466 ctaatttgtttggaggctgaatataaatgcttcacaaagggcattcgctttataaaccat 407
Query: 963 tcgcccacccagaagatggttgaaccaacccatgaagaaacaaatattccaaccagaaat 1022
|| || | |||||||||||| ||||| | |||||| |||||||| | ||||| | ||
Sbjct: 406 tccccaagccagaagatggtggaacctatccatgatgaaacaaaaacaccaacaaagaac 347
Query: 1023 atgaataccagagaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatat 1082
| || |||||||| || | ||| ||||| ||||||||||| | |||| |||||||
Sbjct: 346 acaaacaccagagatgtgacaaatccaagtccaaatatgtcaacgccaaggcgtgcatat 287
Query: 1083 aggggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgact 1142
|| ||||| || ||||||||||||||||| |||| ||||||||| || ||||| || ||
Sbjct: 286 agtggactaaagaaaccatcaacaaattgcataagccaccatgtaataaagaatgtcaca 227
Query: 1143 gcaacaggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaaga 1202
|| | || ||||| |||||||||||||| || ||||| | |||||||| ||||| ||
Sbjct: 226 gctatggggaaaagtactacacatccagtaatgaacttcttggagacccagctttgtagg 167
Query: 1203 acagcacagcatgccttgcgtgtggagg 1230
||| |||||| |||| ||| |||||||
Sbjct: 166 acaaaacagcaggcctcgcgagtggagg 139
>gb|DN488101.1|DN488101 R032D11.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone V017D11 3', mRNA sequence
Length = 765
Score = 170 bits (86), Expect = 8e-041
Identities = 311/386 (80%)
Strand = Plus / Plus
Query: 621 atcacctgaggcatggtcattcctcctgacacaattatttcaattccttctcgaatggat 680
|||| ||| ||||| ||||| ||||| || ||||| || || |||||||||||||| ||
Sbjct: 332 atcatctgtggcattgtcatacctccagaaacaatgatctctattccttctcgaattgac 391
Query: 681 aaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtatagatga 740
| ||| |||||||| || |||| || |||||||| ||||| ||||| || ||||||||
Sbjct: 392 agatttggtcttataatgtccttggaattcaccaggaatatatcaccaatatatagatgg 451
Query: 741 tttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggaccaca 800
|||||||| ||| | |||||||||| |||||||| | || || ||||||||| ||
Sbjct: 452 tttgttggaacaaaaacactacacaactcttcatcttcattatctctctgaaggattact 511
Query: 801 gttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgcaact 860
|||||||| ||||| ||||| ||||||||||| | || |||||| |||| ||||| ||
Sbjct: 512 gttgatgtgatgaaaccaaaagcatattcacctacacgaggatgatgaataattgccacc 571
Query: 861 tctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgatgct 920
||||| ||||| || ||||| |||||||| |||||||||| || | ||| || || |||
Sbjct: 572 tctttaaaagctgtggtattctgatctggagaaattgcagcactaatttgtttggaggct 631
Query: 921 gaatatatatgtcttacaaatggcattttctttataaaccactcgcccacccagaagatg 980
||||||| ||| | ||||| |||||| |||||||||||| || || | ||||||||||
Sbjct: 632 gaatataaatgcttcacaaagggcattcgctttataaaccattccccaagccagaagatg 691
Query: 981 gttgaaccaacccatgaagaaacaaa 1006
|| ||||| | |||||| ||||||||
Sbjct: 692 gtggaacctatccatgatgaaacaaa 717
>gb|CV269592.1|CV269592 WS0208.B21_K22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0208_K22 3', mRNA sequence
Length = 745
Score = 157 bits (79), Expect = 1e-036
Identities = 307/383 (80%)
Strand = Plus / Plus
Query: 621 atcacctgaggcatggtcattcctcctgacacaattatttcaattccttctcgaatggat 680
|||| ||| ||||| ||||| ||||| || ||||| || || |||||||||||||| ||
Sbjct: 363 atcatctgtggcattgtcatacctccagaaacaatgatctctattccttctcgaattgac 422
Query: 681 aaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtatagatga 740
| ||| |||||||| || |||| || |||||||| ||||| ||||| || ||||||||
Sbjct: 423 agatttggtcttataatgtccttggaattcaccaggaatatatcaccaatatatagatgg 482
Query: 741 tttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggaccaca 800
||||| || ||| | |||||||||| |||||||| | || || ||||||||| ||
Sbjct: 483 tttgtcggaacaaaaacactacacaactcttcatcttcattatctctctgaaggattact 542
Query: 801 gttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgcaact 860
|||||||| ||||| ||||| ||||||||||| | || |||||| |||| ||||| ||
Sbjct: 543 gttgatgtgatgaaaccaaaagcatattcacctacacgaggatgatgaataattgccacc 602
Query: 861 tctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgatgct 920
||||| ||||| || ||||| |||||||| |||||||||| || | ||| || || |||
Sbjct: 603 tctttaaaagctgtggtattctgatctggagaaattgcagcactaatttgtttggaggct 662
Query: 921 gaatatatatgtcttacaaatggcattttctttataaaccactcgcccacccagaagatg 980
||||||| ||| | ||||| |||||| |||||||||||| || || | ||||||||||
Sbjct: 663 gaatataaatgcttcacaaagggcattcgctttataaaccattccccaagccagaagatg 722
Query: 981 gttgaaccaacccatgaagaaac 1003
|| ||||| | |||||| |||||
Sbjct: 723 gtggaacctatccatgatgaaac 745
>gb|DT500890.1|DT500890 PX0019.BR_L02 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0019_L02
5', mRNA sequence
Length = 624
Score = 143 bits (72), Expect = 2e-032
Identities = 351/444 (79%)
Strand = Plus / Minus
Query: 787 tctgaaggaccacagttgatgttatgaatccaaatgcatattcaccaattcgtggatgac 846
||||||||| || |||||||| ||||| ||||| |||||||| || | || ||||||
Sbjct: 585 tctgaaggattactgttgatgtgatgaaaccaaaagcatattctcctacacgaggatgat 526
Query: 847 gaattattgcaacttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctga 906
|||| ||||| || ||||| ||||| || ||||| |||||||| |||||||||| || |
Sbjct: 525 gaataattgccacctctttaaaagctgtggtattctgatctggagaaattgcagcactaa 466
Query: 907 cttgctttgatgctgaatatatatgtcttacaaatggcattttctttataaaccactcgc 966
||| || || |||||||||| ||| | ||||| |||||| |||||||||||| || |
Sbjct: 465 tttgtttggaggctgaatataaatgcttcacaaagggcattcgctttataaaccattccc 406
Query: 967 ccacccagaagatggttgaaccaacccatgaagaaacaaatattccaaccagaaatatga 1026
| | |||||||||||| ||||| | |||||| |||||||| | ||||| | || | |
Sbjct: 405 caagccagaagatggtggaacctatccatgatgaaacaaaaacaccaacaaagaacacaa 346
Query: 1027 ataccagagaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggg 1086
| |||||||| || | ||| ||||| ||||||||||| | |||| ||||||||| |
Sbjct: 345 acaccagagatgtgacaaatccaagtccaaatatgtcaacgccaaggcgtgcatatagtg 286
Query: 1087 gactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaa 1146
|||| || ||||||||||||||| | |||| ||||||||| || ||||| || || || |
Sbjct: 285 gactaaagaaaccatcaacaaatcgcataagccaccatgtaataaagaatgtcacagcta 226
Query: 1147 caggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacag 1206
|| ||||| |||||||||||||| || ||||| | |||||||| ||||| || |||
Sbjct: 225 tggggaaaagtactacacatccagtaatgaacttcttggagacccagctttgtaggacaa 166
Query: 1207 cacagcatgccttgcgtgtggagg 1230
|||||| |||| ||| |||||||
Sbjct: 165 aacagcaggcctcgcgagtggagg 142
>gb|CV252969.1|CV252969 PX0019.B21.1_L02 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_L02 3', mRNA sequence
Length = 715
Score = 137 bits (69), Expect = 1e-030
Identities = 273/341 (80%)
Strand = Plus / Plus
Query: 621 atcacctgaggcatggtcattcctcctgacacaattatttcaattccttctcgaatggat 680
|||| ||| ||||| ||||| ||||| || ||||| || || |||||||||||||| ||
Sbjct: 363 atcatctgtggcattgtcatacctccagaaacaatgatctctattccttctcgaattgac 422
Query: 681 aaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtatagatga 740
| ||| |||||||| || |||| || |||||||| ||||| ||||| || ||||||||
Sbjct: 423 agatttggtcttataatgtccttggaattcaccaggaatatatcaccaatatatagatgg 482
Query: 741 tttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggaccaca 800
||||| || ||| | |||||||||| |||||||| | || || ||||||||| ||
Sbjct: 483 tttgtcggaacaaaaacactacacaactcttcatcttcattatctctctgaaggattact 542
Query: 801 gttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgcaact 860
|||||||| ||||| ||||| ||||||||||| | || |||||| |||| ||||| ||
Sbjct: 543 gttgatgtgatgaaaccaaaagcatattcacctacacgaggatgatgaataattgccacc 602
Query: 861 tctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgatgct 920
||||| ||||| || ||||| |||||||| |||||||||| || | ||| || || |||
Sbjct: 603 tctttaaaagctgtggtattctgatctggagaaattgcagcactaatttgtttggaggct 662
Query: 921 gaatatatatgtcttacaaatggcattttctttataaacca 961
||||||| ||| | ||||| |||||| ||||||||||||
Sbjct: 663 gaatataaatgcttcacaaagggcattcgctttataaacca 703
>gb|BU829781.1|BU829781 K067P31P Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 535
Score = 135 bits (68), Expect = 5e-030
Identities = 243/300 (81%), Gaps = 1/300 (0%)
Strand = Plus / Minus
Query: 708 ttcaccagaaatatgtcaccgatgtatagatgatttgttggcacatacacactacacagt 767
|||||||| ||||| ||||| || |||||||| |||||||| ||| | ||||||||||
Sbjct: 534 ttcaccaggaatatatcaccaatatatagatggtttgttggaacaaaaacactacacaac 475
Query: 768 tcttcatcgc-ctttgtcagtctgaaggaccacagttgatgttatgaatccaaatgcata 826
||||||||| | || || ||||||||| || |||||||| ||||| ||||| |||||
Sbjct: 474 tcttcatcgttcattatctctctgaaggattactgttgatgtgatgaaaccaaaagcata 415
Query: 827 ttcaccaattcgtggatgacgaattattgcaacttctttgaaagcagtcgtattttgatc 886
|||||| | || |||||| |||| ||||| || ||||| ||||| || ||||| |||||
Sbjct: 414 ttcacctacacgaggatgatgaataattgccacctctttaaaagctgtggtattctgatc 355
Query: 887 tggtgaaattgcagtgctgacttgctttgatgctgaatatatatgtcttacaaatggcat 946
||| |||||||||| || | ||| || || |||||||||| ||| | ||||| |||||
Sbjct: 354 tggagaaattgcagcactaatttgtttggaggctgaatataaatgcttcacaaagggcat 295
Query: 947 tttctttataaaccactcgcccacccagaagatggttgaaccaacccatgaagaaacaaa 1006
| |||||||||||| || || | |||||||||||| ||||| | |||||| ||||||||
Sbjct: 294 tcgctttataaaccattccccaagccagaagatggtggaacctatccatgatgaaacaaa 235
>gb|CV275864.1|CV275864 WS0177.B21_O02 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0177_O02 3', mRNA sequence
Length = 816
Score = 129 bits (65), Expect = 3e-028
Identities = 236/293 (80%)
Strand = Plus / Plus
Query: 669 tctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccg 728
|||||||| |||||||| ||||||||||||||||| || || |||||||||| |||||
Sbjct: 517 tctcgaatagataaatttggtcttatgatctcctctgaattgaccagaaatacatcacca 576
Query: 729 atgtatagatgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtc 788
||||| ||||| || ||||| ||||| || || || | |||||||| || || || ||
Sbjct: 577 atgtacagatggttggttgggacataaacgctgcataactcttcatccccattctctctc 636
Query: 789 tgaaggaccacagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacga 848
|| ||||| | || |||||| ||||| |||||||||||||| ||| || ||||| |||
Sbjct: 637 tggaggactaaagatgatgtgatgaaaccaaatgcatattcgccatgacggggatgtcga 696
Query: 849 attattgcaacttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgact 908
|| ||||| || ||||| |||||||| |||||||| ||||| ||||| |||| || | |
Sbjct: 697 ataattgcgacctctttaaaagcagtagtattttggtctggagaaatagcagaactaatt 756
Query: 909 tgctttgatgctgaatatatatgtcttacaaatggcattttctttataaacca 961
|| || |||||||| |||| || | |||||||||||| |||| ||||||||
Sbjct: 757 tgtttagatgctgagtataagtgcttcacaaatggcattctcttaataaacca 809
>gb|DN490693.1|DN490693 UL76PH09.3pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL76PH09 3',
mRNA sequence
Length = 715
Score = 123 bits (62), Expect = 2e-026
Identities = 237/294 (80%), Gaps = 1/294 (0%)
Strand = Plus / Plus
Query: 669 tctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccg 728
|||||||| |||||||| ||||||||||||||||| || || |||||||||| |||||
Sbjct: 387 tctcgaatagataaatttggtcttatgatctcctctgaattgaccagaaatacatcacca 446
Query: 729 atgtatagatgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtc 788
||||| ||||| || ||||| ||||| || || || | |||||||| || || || ||
Sbjct: 447 atgtacagatggttggttgggacataaacgctgcataactcttcatccccattctctctc 506
Query: 789 tgaaggaccacagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacga 848
|||||||| | || |||||| ||||| |||||||||||||| ||| || ||||| |||
Sbjct: 507 tgaaggactaaagatgatgtgatgaaaccaaatgcatattcgccatgacggggatgtcga 566
Query: 849 attattgcaacttctttgaaagcagtcgta-ttttgatctggtgaaattgcagtgctgac 907
|| ||||| || ||||| |||||||| ||| ||||| ||||| ||||| |||| || |
Sbjct: 567 ataattgcgacctctttaaaagcagtagtatttttggtctggagaaatagcagaactaat 626
Query: 908 ttgctttgatgctgaatatatatgtcttacaaatggcattttctttataaacca 961
||| || |||||||| |||| || | |||||||||||| |||| ||||||||
Sbjct: 627 ttgtttagatgctgagtataagtgcttcacaaatggcattctcttaataaacca 680
>gb|CX186076.1|CX186076 E12_45-26_10.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 603
Score = 97.6 bits (49), Expect = 1e-018
Identities = 115/137 (83%)
Strand = Plus / Minus
Query: 1086 ggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgca 1145
|||||||| || ||||||||||| ||||||||||||||||| | || || || |||||
Sbjct: 315 ggactgaagaagccatcaacaaactgaataaaccaccatgtcactaaaaatgtaactgcc 256
Query: 1146 acaggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaaca 1205
|| ||||| | || |||||||||||||| ||||| | ||| |||||||||||||||||
Sbjct: 255 accggaaacaaaacaacacatccagtcatgaacttcttagaggcccaactttgaagaaca 196
Query: 1206 gcacagcatgccttgcg 1222
||| |||| ||||||||
Sbjct: 195 gcatagcaagccttgcg 179
Score = 79.8 bits (40), Expect = 2e-013
Identities = 169/212 (79%)
Strand = Plus / Minus
Query: 803 tgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgcaacttc 862
|||||| ||||| |||||||||||||| ||| || ||||| ||||| ||||| || ||
Sbjct: 598 tgatgtgatgaaaccaaatgcatattcgccatgacggggatgtcgaataattgcgacctc 539
Query: 863 tttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgatgctga 922
||| |||||||| |||||||| ||||| ||||| |||| || | ||| || ||||||||
Sbjct: 538 tttaaaagcagtagtattttggtctggagaaatagcagaactaatttgtttagatgctga 479
Query: 923 atatatatgtcttacaaatggcattttctttataaaccactcgcccacccagaagatggt 982
|||| || | |||||||||||| |||| |||||||| || || ||| |||| | |||
Sbjct: 478 gtataagtgcttcacaaatggcattctcttaataaaccattccccgaccaagaaaacggt 419
Query: 983 tgaaccaacccatgaagaaacaaatattccaa 1014
| ||| | ||| |||||| ||||||| ||||
Sbjct: 418 ggcacccagccacgaagaagcaaatatcccaa 387
>gb|BP926366.1|BP926366 BP926366 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-058_G12.f 5', mRNA sequence
Length = 468
Score = 77.8 bits (39), Expect = 9e-013
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 1076 tgcatataggggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaa 1135
||||||||| ||||| || ||||||||||||||||| |||| ||||||||| || |||||
Sbjct: 378 tgcatatagtggactaaagaaaccatcaacaaattgcataagccaccatgtaataaagaa 319
Query: 1136 cgtgactgcaacaggaaaaaggactacacatccagtcataaactttcttgagacccaact 1195
|| || || | || ||||| |||||||||||||| || ||||| | |||||||| ||
Sbjct: 318 tgtcacagctatggggaaaagtactacacatccagtaatgaacttcttggagacccagct 259
Query: 1196 ttg 1198
|||
Sbjct: 258 ttg 256
>gb|CV252774.1|CV252774 PX0015.B21_O23 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_O23 3', mRNA sequence
Length = 638
Score = 75.8 bits (38), Expect = 4e-012
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 669 tctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccg 728
|||||||| |||||||| ||||||||||||||||| || || |||||||||| |||||
Sbjct: 484 tctcgaatagataaatttggtcttatgatctcctctgaattgaccagaaatacatcacca 543
Query: 729 atgtatagatgatttgttggcacata 754
||||| ||||| || ||||| |||||
Sbjct: 544 atgtacagatggttggttgggacata 569
>gb|BP933938.1|BP933938 BP933938 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-058_G12.r 3', mRNA sequence
Length = 568
Score = 69.9 bits (35), Expect = 2e-010
Identities = 125/155 (80%)
Strand = Plus / Plus
Query: 621 atcacctgaggcatggtcattcctcctgacacaattatttcaattccttctcgaatggat 680
|||| ||| ||||| ||||| ||||| || ||||| || || |||||||||||||| ||
Sbjct: 402 atcatctgtggcattgtcatacctccagaaacaatgatctctattccttctcgaattgac 461
Query: 681 aaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtatagatga 740
| ||| |||||||| || |||| || |||||||| ||||| ||||| || ||||||||
Sbjct: 462 agatttggtcttataatgtccttggaattcaccaggaatatatcaccaatatatagatgg 521
Query: 741 tttgttggcacatacacactacacagttcttcatc 775
||||| || || | |||||||||| ||||||||
Sbjct: 522 tttgtcggaccaaaaacactacacaactcttcatc 556
>gb|CF118835.1|CF118835 MTU10CS.P10.A02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 171
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 669 tctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaata 720
|||||||| |||||||| ||||||||||||||||| || || ||||||||||
Sbjct: 110 tctcgaatagataaatttggtcttatgatctcctctgaattgaccagaaata 161
>gb|AJ780529.1|AJ780529 AJ780529 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900009C07F1, mRNA sequence
Length = 218
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 669 tctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaata 720
|||||||| |||||||| ||||||||||||||||| || || ||||||||||
Sbjct: 124 tctcgaatagataaatttggtcttatgatctcctctgaattgaccagaaata 175
>gb|AJ780730.1|AJ780730 AJ780730 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900011F12F1, mRNA sequence
Length = 187
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 669 tctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaata 720
|||||||| |||||||| ||||||||||||||||| || || ||||||||||
Sbjct: 124 tctcgaatagataaatttggtcttatgatctcctctgaattgaccagaaata 175
>gb|BU810845.1|BU810845 UL76PH09 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 462
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 1164 catccagtcataaactttcttgagacccaactttgaagaacagcacagcatgccttgcg 1222
||||||||||| ||||| | ||| |||||||||||||||||||| |||| ||||||||
Sbjct: 249 catccagtcatgaacttcttagaggcccaactttgaagaacagcatagcaagccttgcg 191
Score = 58.0 bits (29), Expect = 9e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 1086 ggactgaaaaaaccatcaacaaattgaataaaccaccatgt 1126
|||||||| || ||||||||||| |||||||||||||||||
Sbjct: 406 ggactgaagaagccatcaacaaactgaataaaccaccatgt 366
>gb|DN500684.1|DN500684 UL76PH09.5pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL76PH09 5',
mRNA sequence
Length = 960
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 1164 catccagtcataaactttcttgagacccaactttgaagaacagcacagcatgccttgcg 1222
||||||||||| ||||| | ||| |||||||||||||||||||| |||| ||||||||
Sbjct: 225 catccagtcatgaacttcttagaggcccaactttgaagaacagcatagcaagccttgcg 167
>gb|DT500586.1|DT500586 PX0015.BR_O23 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0015_O23
5', mRNA sequence
Length = 414
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 1161 acacatccagtcataaactttcttgagacccaactttgaagaacagcacagcatgccttg 1220
|||||||||||||| ||||| | ||| |||| ||||||||||||||| |||| ||||||
Sbjct: 205 acacatccagtcatgaacttcttagaggcccacctttgaagaacagcatagcaagccttg 146
Query: 1221 cg 1222
||
Sbjct: 145 cg 144
>gb|BU867805.1|BU867805 M104E10 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 734
Score = 58.0 bits (29), Expect = 9e-007
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 1098 ccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaacaggaaaaagg 1157
||||| ||||| ||||||||||||||||| ||| |||| |||| ||||| ||||| |||
Sbjct: 270 ccatccacaaagtgaataaaccaccatgttatgtagaaggtgattgcaatgggaaacagg 211
Query: 1158 actacacatccagtcat 1174
| |||||||| |||||
Sbjct: 210 atgacacatcctgtcat 194
Score = 42.1 bits (21), Expect = 0.051
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 711 accagaaatatgtcaccgatgtatagatgatttgttggcacatacacac 759
||||| ||||| ||||| ||||| ||||||||||| || ||||| ||||
Sbjct: 657 accaggaatatatcaccaatgtacagatgatttgtgggaacatagacac 609
>gb|DT508835.1|DT508835 WS02422.BR_B02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_B02 5', mRNA sequence
Length = 919
Score = 58.0 bits (29), Expect = 9e-007
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 1098 ccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaacaggaaaaagg 1157
||||| ||||| ||||||||||||||||| ||| |||| |||| ||||| ||||| |||
Sbjct: 279 ccatccacaaagtgaataaaccaccatgttatgtagaaggtgattgcaatgggaaacagg 220
Query: 1158 actacacatccagtcat 1174
| |||||||| |||||
Sbjct: 219 atgacacatcctgtcat 203
Score = 42.1 bits (21), Expect = 0.051
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 711 accagaaatatgtcaccgatgtatagatgatttgttggcacatacacac 759
||||| ||||| ||||| ||||| ||||||||||| || ||||| ||||
Sbjct: 666 accaggaatatatcaccaatgtacagatgatttgtgggaacatagacac 618
>gb|CA824730.1|CA824730 R47C07 two-month-old roots from clone 'Beaupre' Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 618
Score = 50.1 bits (25), Expect = 2e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 1098 ccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaacaggaaaaagg 1157
||||| ||||| |||| |||||||||||| ||| |||| |||| ||||| ||||| ||
Sbjct: 253 ccatccacaaagtgaacaaaccaccatgttatgtagaaagtgattgcaatgggaaacagt 194
Query: 1158 actacacatccagtcataaactttcttga 1186
| |||||||| ||||| |||||| ||||
Sbjct: 193 atgacacatcctgtcatgaacttttttga 165
>gb|CV242270.1|CV242270 WS02514.B21.1_J18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02514_J18 3', mRNA sequence
Length = 874
Score = 50.1 bits (25), Expect = 2e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 1098 ccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaacaggaaaaagg 1157
||||| ||||| |||| |||||||||||| ||| |||| |||| ||||| ||||| ||
Sbjct: 738 ccatccacaaagtgaacaaaccaccatgttatgtagaaagtgattgcaatgggaaacagt 797
Query: 1158 actacacatccagtcataaactttcttga 1186
| |||||||| ||||| |||||| ||||
Sbjct: 798 atgacacatcctgtcatgaacttttttga 826
>gb|DT520899.1|DT520899 WS02448.B21_N17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_N17 3', mRNA sequence
Length = 871
Score = 50.1 bits (25), Expect = 2e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 1098 ccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaacaggaaaaagg 1157
||||| ||||| |||| |||||||||||| ||| |||| |||| ||||| ||||| ||
Sbjct: 744 ccatccacaaagtgaacaaaccaccatgttatgtagaaagtgattgcaatgggaaacagt 803
Query: 1158 actacacatccagtcataaactttcttga 1186
| |||||||| ||||| |||||| ||||
Sbjct: 804 atgacacatcctgtcatgaacttttttga 832
>gb|DT520901.1|DT520901 WS02448.B21_N19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_N19 3', mRNA sequence
Length = 876
Score = 50.1 bits (25), Expect = 2e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 1098 ccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaacaggaaaaagg 1157
||||| ||||| |||| |||||||||||| ||| |||| |||| ||||| ||||| ||
Sbjct: 745 ccatccacaaagtgaacaaaccaccatgttatgtagaaagtgattgcaatgggaaacagt 804
Query: 1158 actacacatccagtcataaactttcttga 1186
| |||||||| ||||| |||||| ||||
Sbjct: 805 atgacacatcctgtcatgaacttttttga 833
>gb|BU826676.1|BU826676 UK123TD11 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 561
Score = 42.1 bits (21), Expect = 0.051
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 1098 ccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaa 1146
||||| ||||| |||| |||||||||||| ||| |||| |||| |||||
Sbjct: 424 ccatccacaaagtgaacaaaccaccatgttatgtagaaagtgattgcaa 376
>gb|BU870532.1|BU870532 Q013G04 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 346
Score = 42.1 bits (21), Expect = 0.051
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 1098 ccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaa 1146
||||| ||||| |||| |||||||||||| ||| |||| |||| |||||
Sbjct: 279 ccatccacaaagtgaacaaaccaccatgttatgtagaaagtgattgcaa 231
>gb|BU889261.1|BU889261 P018F09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 553
Score = 42.1 bits (21), Expect = 0.051
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 1098 ccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaa 1146
||||| ||||| |||| |||||||||||| ||| |||| |||| |||||
Sbjct: 416 ccatccacaaagtgaacaaaccaccatgttatgtagaaagtgattgcaa 368
>gb|BU891061.1|BU891061 P045D09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 524
Score = 42.1 bits (21), Expect = 0.051
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 1098 ccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaa 1146
||||| ||||| |||| |||||||||||| ||| |||| |||| |||||
Sbjct: 298 ccatccacaaagtgaacaaaccaccatgttatgtagaaagtgattgcaa 250
>gb|DT470091.1|DT470091 WS01919.C21_N14 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_N14 3', mRNA sequence
Length = 624
Score = 42.1 bits (21), Expect = 0.051
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 711 accagaaatatgtcaccgatgtatagatgatttgttggcacatacacac 759
||||| ||||| ||||| ||||| ||||||||||| || ||||| ||||
Sbjct: 452 accaggaatatatcaccaatgtacagatgatttgtgggaacatagacac 500
>gb|DT488257.1|DT488257 WS02535.B21_O22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_O22 3', mRNA sequence
Length = 866
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1098 ccatcaacaaattgaataaaccaccatgt 1126
||||| ||||| |||||||||||||||||
Sbjct: 833 ccatccacaaagtgaataaaccaccatgt 861
Score = 42.1 bits (21), Expect = 0.051
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 711 accagaaatatgtcaccgatgtatagatgatttgttggcacatacacac 759
||||| ||||| ||||| ||||| ||||||||||| || ||||| ||||
Sbjct: 446 accaggaatatatcaccaatgtacagatgatttgtgggaacatagacac 494
>gb|DT513443.1|DT513443 WS02422.B21_B02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_B02 3', mRNA sequence
Length = 817
Score = 42.1 bits (21), Expect = 0.051
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 711 accagaaatatgtcaccgatgtatagatgatttgttggcacatacacac 759
||||| ||||| ||||| ||||| ||||||||||| || ||||| ||||
Sbjct: 447 accaggaatatatcaccaatgtacagatgatttgtgggaacatagacac 495
>gb|BU890505.1|BU890505 P037H07 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 473
Score = 40.1 bits (20), Expect = 0.20
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 630 ggcatggtcattcctcctgacacaattatttcaattccttctcgaatggataaattaggt 689
||||| ||||| ||||| || ||||| || || |||||||||||||| || | ||| |||
Sbjct: 95 ggcattgtcatacctccagaaacaatgatctctattccttctcgaattgacagatttggt 36
Query: 690 cttatgatctcctcagagttcaccagaaatat 721
|||| || |||| || |||||||| |||||
Sbjct: 35 gttataatgtccttggaattcaccaggaatat 4
>gb|DT517892.1|DT517892 WS02435.B21_J19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_J19 3', mRNA sequence
Length = 823
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 814 atccaaatgcatattcacca 833
||||||||||||||||||||
Sbjct: 789 atccaaatgcatattcacca 808
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 170,061
Number of Sequences: 369679
Number of extensions: 170061
Number of successful extensions: 49882
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49797
Number of HSP's gapped (non-prelim): 72
length of query: 1264
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1245
effective length of database: 196,384,763
effective search space: 244499029935
effective search space used: 244499029935
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)