BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2430991.2.1
         (515 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AY278316.1|  Populus alba ecotype 6K3 glycosyl transferas...    72   2e-011
gb|AY278315.1|  Populus alba ecotype 2AS11 glycosyl transfer...    72   2e-011
gb|AY124702.1|  Populus alba glycosyl transferase protein A ...    56   1e-006
gb|CV243575.1|CV243575  WS0252.B21_E06 PT-MB-N-A-15 Populus ...    40   0.080
gb|CV263738.1|CV263738  WS02022.B21_K12 PTxN-IB-N-A-11 Popul...    38   0.32 

>gb|AY278316.1| Populus alba ecotype 6K3 glycosyl transferase protein A gene,
           partial cds
          Length = 804

 Score = 71.9 bits (36), Expect = 2e-011
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                       
Query: 264 gaattaacaacaactgaaacagcaaggatgttgtctgagaagacacaaaaatgatagagg 323
           ||||| |||||||| |||   |||||||| ||||| ||||||||||||||||||||||| 
Sbjct: 287 gaattgacaacaacagaagttgcaaggatattgtcagagaagacacaaaaatgatagaga 228

                   
Query: 324 ctgttatc 331
           ||||||||
Sbjct: 227 ctgttatc 220




 Score = 38.2 bits (19), Expect = 0.32
 Identities = 40/47 (85%)
 Strand = Plus / Minus

                                                          
Query: 81  agctgtttaagaacgggaacatacgatgcattgagccaggtaaagtc 127
           ||||| ||||| || ||||||||||| ||||| |||||  |||||||
Sbjct: 470 agctgcttaagcactggaacatacgaagcatttagccatttaaagtc 424



>gb|AY278315.1| Populus alba ecotype 2AS11 glycosyl transferase protein A gene,
           partial cds
          Length = 804

 Score = 71.9 bits (36), Expect = 2e-011
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                       
Query: 264 gaattaacaacaactgaaacagcaaggatgttgtctgagaagacacaaaaatgatagagg 323
           ||||| |||||||| |||   |||||||| ||||| ||||||||||||||||||||||| 
Sbjct: 287 gaattgacaacaacagaagttgcaaggatattgtcagagaagacacaaaaatgatagaga 228

                   
Query: 324 ctgttatc 331
           ||||||||
Sbjct: 227 ctgttatc 220




 Score = 38.2 bits (19), Expect = 0.32
 Identities = 40/47 (85%)
 Strand = Plus / Minus

                                                          
Query: 81  agctgtttaagaacgggaacatacgatgcattgagccaggtaaagtc 127
           ||||| ||||| || ||||||||||| ||||| |||||  |||||||
Sbjct: 470 agctgcttaagcactggaacatacgaagcatttagccatttaaagtc 424



>gb|AY124702.1| Populus alba glycosyl transferase protein A gene, partial cds
          Length = 808

 Score = 56.0 bits (28), Expect = 1e-006
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                       
Query: 264 gaattaacaacaactgaaacagcaaggatgttgtctgagaagacacaaaaatgatagagg 323
           ||||| |||||||| |||   |||||||| ||||| ||||||||||| ||||||||||| 
Sbjct: 289 gaattgacaacaacagaagttgcaaggatattgtcagagaagacacagaaatgatagaga 230

               
Query: 324 ctgt 327
           ||||
Sbjct: 229 ctgt 226




 Score = 38.2 bits (19), Expect = 0.32
 Identities = 40/47 (85%)
 Strand = Plus / Minus

                                                          
Query: 81  agctgtttaagaacgggaacatacgatgcattgagccaggtaaagtc 127
           ||||| ||||| || ||||||||||| ||||| |||||  |||||||
Sbjct: 472 agctgcttaagcactggaacatacgaagcatttagccatttaaagtc 426



>gb|CV243575.1|CV243575 WS0252.B21_E06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS0252_E06 3', mRNA sequence
          Length = 904

 Score = 40.1 bits (20), Expect = 0.080
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 311 aaaatgatagaggctgttat 330
           ||||||||||||||||||||
Sbjct: 120 aaaatgatagaggctgttat 101



>gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS02022_K12 3', mRNA sequence
          Length = 937

 Score = 38.2 bits (19), Expect = 0.32
 Identities = 40/47 (85%)
 Strand = Plus / Plus

                                                          
Query: 81  agctgtttaagaacgggaacatacgatgcattgagccaggtaaagtc 127
           ||||| ||||| || ||||||||||| ||||| |||||  |||||||
Sbjct: 869 agctgcttaagcactggaacatacgaagcatttagccatttaaagtc 915



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,682
Number of Sequences: 369679
Number of extensions: 53682
Number of successful extensions: 16205
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16197
Number of HSP's gapped (non-prelim): 8
length of query: 515
length of database: 203,408,664
effective HSP length: 19
effective length of query: 496
effective length of database: 196,384,763
effective search space: 97406842448
effective search space used: 97406842448
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)