BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430806.2.1
(1380 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN550582.1|CN550582 GQ0241.B3_I24 GQ024 Populus trichoca... 100 3e-019
gb|CV257325.1|CV257325 WS0246.B21_F06 PTxD-ICC-N-A-14 Popul... 94 2e-017
gb|AJ780354.1|AJ780354 AJ780354 Populus euphratica leaf 3-6... 80 3e-013
gb|CV245669.1|CV245669 WS0259.B21_B01 PT-MB-N-A-15 Populus ... 60 2e-007
gb|DT519199.1|DT519199 WS02440.B21_K05 PTxD-ICC-N-A-14 Popu... 60 2e-007
gb|CA927167.1|CA927167 MTU6CR.P5.G08 Aspen root cDNA Librar... 52 6e-005
gb|CN520175.1|CN520175 GQ0105.B3_J15 GQ010 Populus trichoca... 46 0.004
gb|AI166473.1|AI166473 xylem.est.301 Poplar xylem Lambda ZA... 42 0.056
gb|BU831213.1|BU831213 T019A02 Populus apical shoot cDNA li... 42 0.056
gb|CN521126.1|CN521126 GQ0106.B3_N14 GQ010 Populus trichoca... 42 0.056
gb|AJ770047.1|AJ770047 AJ770047 Populus euphratica leaf 3-6... 42 0.056
gb|CX169062.1|CX169062 C02_69-95_06.ab1 leaf inoculated wit... 42 0.056
gb|DV466552.1|DV466552 MTUNUL1.P7.B05 NUL Populus fremontii... 42 0.056
gb|CX186591.1|CX186591 D05_45-56_07.ab1 leaf inoculated wit... 40 0.22
>gb|CN550582.1|CN550582 GQ0241.B3_I24 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_I24 5', mRNA sequence
Length = 808
Score = 99.6 bits (50), Expect = 3e-019
Identities = 152/186 (81%)
Strand = Plus / Plus
Query: 919 tgaagagggccaacaatggtatgaacctgagtggtggaaatttggagattcaaaaacgta 978
||||||||| ||| ||||||||| ||||| |||||||||||||||||| |||| ||||
Sbjct: 394 tgaagagggtaaaccatggtatgagcctgaatggtggaaatttggagatgaaaaatcgta 453
Query: 979 ttttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctacatcaa 1038
|||||||| || |||||||| | |||| ||||| |||||||||||||| || || |
Sbjct: 454 ctttcgacatgcatctggttcccttcttatactctccaaaaatttggctcggtatattga 513
Query: 1039 cataaatagtgcgtcactgcagagttatgcacacgatgatatatcagtaggttcatggat 1098
|||||| ||||| || || |||||| || || || ||||||||||| || || |||||
Sbjct: 514 cataaacagtgcatctcttaggagttacgctcatgacgatatatcagtgggatcttggat 573
Query: 1099 gatggg 1104
||||||
Sbjct: 574 gatggg 579
Score = 42.1 bits (21), Expect = 0.056
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 785 tgggatgcagaattttatgtcaaagttga 813
|||||||| ||||||||||| ||||||||
Sbjct: 260 tgggatgcggaattttatgtaaaagttga 288
>gb|CV257325.1|CV257325 WS0246.B21_F06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0246_F06 3', mRNA sequence
Length = 712
Score = 93.7 bits (47), Expect = 2e-017
Identities = 140/171 (81%)
Strand = Plus / Minus
Query: 934 atggtatgaacctgagtggtggaaatttggagattcaaaaacgtattttcgacacgcttc 993
||||||||| ||||| |||||||||||||||||| |||| |||| |||||||| || ||
Sbjct: 523 atggtatgagcctgaatggtggaaatttggagatgaaaaatcgtactttcgacatgcatc 464
Query: 994 tggttctttgtttatcctctcaaaaaatttggctcgctacatcaacataaatagtgcgtc 1053
|||||| | |||| ||||| |||||||||||||| || || ||||||| ||||| ||
Sbjct: 463 tggttcccttgttatactctccaaaaatttggctcggtatattgacataaacagtgcatc 404
Query: 1054 actgcagagttatgcacacgatgatatatcagtaggttcatggatgatggg 1104
|| |||||| || || || ||||||||||| || || |||||||||||
Sbjct: 403 tcttaggagttacgctcatgacgatatatcagtgggatcttggatgatggg 353
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 785 tgggatgcagaattttatgtcaaagttga 813
|||||||||||||||||||| ||||||||
Sbjct: 672 tgggatgcagaattttatgtaaaagttga 644
>gb|AJ780354.1|AJ780354 AJ780354 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900001G04F1, mRNA sequence
Length = 389
Score = 79.8 bits (40), Expect = 3e-013
Identities = 142/176 (80%)
Strand = Plus / Plus
Query: 566 tggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctattcgtttt 625
|||||||| ||||| ||||| | || || |||||||||| || |||| || ||||||
Sbjct: 197 tggatgcctagaggagatgccttaaaaaaacttgaggaaagaggagtagtgatacgtttt 256
Query: 626 gttattggtcggagtgcaaatcgaggtgatagcttggaccgtaatattgatgatgaaaat 685
|| |||||||| ||||| |||||||| ||||| || || || ||||| || | |||||||
Sbjct: 257 gtgattggtcgcagtgctaatcgaggggatagtttagatcgaaatatcgacggtgaaaat 316
Query: 686 cggcagacaaaggacttcttgattcttgaaagtcatgaagaggctgcagaagaatt 741
|| |||||||| ||| ||||||||||| ||||||| |||||| |||||||||
Sbjct: 317 cgttcaacaaaggatttcctgattcttgaaggtcatgaggaggctcaagaagaatt 372
>gb|CV245669.1|CV245669 WS0259.B21_B01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0259_B01 3', mRNA sequence
Length = 844
Score = 60.0 bits (30), Expect = 2e-007
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 934 atggtatgaacctgagtggtggaaatttggagat 967
||||||||||||||| ||||||||||||||||||
Sbjct: 613 atggtatgaacctgaatggtggaaatttggagat 580
>gb|DT519199.1|DT519199 WS02440.B21_K05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_K05 3', mRNA sequence
Length = 847
Score = 60.0 bits (30), Expect = 2e-007
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 934 atggtatgaacctgagtggtggaaatttggagat 967
||||||||||||||| ||||||||||||||||||
Sbjct: 625 atggtatgaacctgaatggtggaaatttggagat 592
>gb|CA927167.1|CA927167 MTU6CR.P5.G08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 686
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 933 aatggtatgaacctgagtggtggaaatttggagattcaaaaacgtattttcgacacgc 990
||||||||||||| || ||||||||||| || ||| ||||| | ||||| ||||||||
Sbjct: 126 aatggtatgaaccagactggtggaaattcggcgatgcaaaatcatatttccgacacgc 69
>gb|CN520175.1|CN520175 GQ0105.B3_J15 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_J15 5', mRNA sequence
Length = 758
Score = 46.1 bits (23), Expect = 0.004
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 933 aatggtatgaacctgagtggtggaaatttggagattcaaaaacgtattttcgacacgc 990
||||||||| ||| || ||||||||||| || ||| ||||| | ||||| ||||||||
Sbjct: 713 aatggtatgnaccagactggtggaaattcggcgatgcaaaatcatatttccgacacgc 656
>gb|AI166473.1|AI166473 xylem.est.301 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 508
Score = 42.1 bits (21), Expect = 0.056
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 785 tgggatgcagaattttatgtcaaagttga 813
||||||||||| || ||||||||||||||
Sbjct: 125 tgggatgcagatttctatgtcaaagttga 153
>gb|BU831213.1|BU831213 T019A02 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 540
Score = 42.1 bits (21), Expect = 0.056
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 785 tgggatgcagaattttatgtcaaagttga 813
||||||||||| || ||||||||||||||
Sbjct: 272 tgggatgcagatttctatgtcaaagttga 300
>gb|CN521126.1|CN521126 GQ0106.B3_N14 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0106_N14 5', mRNA sequence
Length = 783
Score = 42.1 bits (21), Expect = 0.056
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 785 tgggatgcagaattttatgtcaaagttga 813
||||||||||| || ||||||||||||||
Sbjct: 598 tgggatgcagatttctatgtcaaagttga 626
>gb|AJ770047.1|AJ770047 AJ770047 Populus euphratica leaf 3-6 months, adult Populus euphratica
cDNA clone P0001100006C04F1, mRNA sequence
Length = 530
Score = 42.1 bits (21), Expect = 0.056
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 1005 ttatcctctcaaaaaatttggctcgctacatcaacataaatagtgcgtcactgcagagtt 1064
|||| ||||| |||||||||||||| || || ||||||| ||||| || || ||||||
Sbjct: 34 ttatactctccaaaaatttggctcggtatattgacataaacagtgcatctcttaagagtt 93
Query: 1065 atgcacacgatgatatatcagtaggttcatggatgatggga 1105
| || || || |||| |||||| || || || |||||||||
Sbjct: 94 acgctcatgacgatacatcagtgggatcttgaatgatggga 134
>gb|CX169062.1|CX169062 C02_69-95_06.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 559
Score = 42.1 bits (21), Expect = 0.056
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 785 tgggatgcagaattttatgtcaaagttga 813
||||||||||| || ||||||||||||||
Sbjct: 286 tgggatgcagatttctatgtcaaagttga 314
>gb|DV466552.1|DV466552 MTUNUL1.P7.B05 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 927
Score = 42.1 bits (21), Expect = 0.056
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 785 tgggatgcagaattttatgtcaaagttga 813
||||||||||| || ||||||||||||||
Sbjct: 432 tgggatgcagatttctatgtcaaagttga 460
>gb|CX186591.1|CX186591 D05_45-56_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 570
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 388 gattggaaggaaaattgttg 407
||||||||||||||||||||
Sbjct: 41 gattggaaggaaaattgttg 60
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 171,639
Number of Sequences: 369679
Number of extensions: 171639
Number of successful extensions: 46699
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46670
Number of HSP's gapped (non-prelim): 29
length of query: 1380
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1361
effective length of database: 196,384,763
effective search space: 267279662443
effective search space used: 267279662443
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)