BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2419390.2.1
         (1603 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA924888.1|CA924888  MTU7TL.P11.A05 Aspen leaf cDNA Libra...    44   0.016
gb|CA929212.1|CA929212  MTU2CA.P10.E10 Aspen apex cDNA Libra...    42   0.065
gb|CA929539.1|CA929539  MTU2CA.P15.C04 Aspen apex cDNA Libra...    42   0.065
gb|CA929851.1|CA929851  MTU2CA.P3.F04 Aspen apex cDNA Librar...    42   0.065
gb|CA929904.1|CA929904  MTU2CA.P4.C05 Aspen apex cDNA Librar...    42   0.065
gb|CA930094.1|CA930094  MTU2CA.P7.A04 Aspen apex cDNA Librar...    42   0.065
gb|AJ772174.1|AJ772174  AJ772174 Populus euphratica shoot in...    40   0.26 
gb|AJ770035.1|AJ770035  AJ770035 Populus euphratica leaf 3-6...    40   0.26 

>gb|CA924888.1|CA924888 MTU7TL.P11.A05 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA
            sequence
          Length = 613

 Score = 44.1 bits (22), Expect = 0.016
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 1290 tcatctgctacaacaatgtcacgctt 1315
            ||||| ||||||||||||||||||||
Sbjct: 292  tcatcagctacaacaatgtcacgctt 317



>gb|CA929212.1|CA929212 MTU2CA.P10.E10 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
            sequence
          Length = 625

 Score = 42.1 bits (21), Expect = 0.065
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 1514 ctcatagtcatttttgactgtcttgaactgcttgttggcaa 1554
            |||||| |||||||  |||||||| ||||||||||| ||||
Sbjct: 519  ctcataatcattttgcactgtcttaaactgcttgttagcaa 559



>gb|CA929539.1|CA929539 MTU2CA.P15.C04 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
            sequence
          Length = 679

 Score = 42.1 bits (21), Expect = 0.065
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 1514 ctcatagtcatttttgactgtcttgaactgcttgttggcaa 1554
            |||||| |||||||  |||||||| ||||||||||| ||||
Sbjct: 200  ctcataatcattttgcactgtcttaaactgcttgttagcaa 160



>gb|CA929851.1|CA929851 MTU2CA.P3.F04 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
            sequence
          Length = 581

 Score = 42.1 bits (21), Expect = 0.065
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 1514 ctcatagtcatttttgactgtcttgaactgcttgttggcaa 1554
            |||||| |||||||  |||||||| ||||||||||| ||||
Sbjct: 200  ctcataatcattttgcactgtcttaaactgcttgttagcaa 160



>gb|CA929904.1|CA929904 MTU2CA.P4.C05 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
            sequence
          Length = 640

 Score = 42.1 bits (21), Expect = 0.065
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 1514 ctcatagtcatttttgactgtcttgaactgcttgttggcaa 1554
            |||||| |||||||  |||||||| ||||||||||| ||||
Sbjct: 519  ctcataatcattttgcactgtcttaaactgcttgttagcaa 559



>gb|CA930094.1|CA930094 MTU2CA.P7.A04 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
            sequence
          Length = 685

 Score = 42.1 bits (21), Expect = 0.065
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 1514 ctcatagtcatttttgactgtcttgaactgcttgttggcaa 1554
            |||||| |||||||  |||||||| ||||||||||| ||||
Sbjct: 200  ctcataatcattttgcactgtcttaaactgcttgttagcaa 160



>gb|AJ772174.1|AJ772174 AJ772174 Populus euphratica shoot in vitro plantlet Israel Populus
            euphratica cDNA clone P0001700002E01F1, mRNA sequence
          Length = 386

 Score = 40.1 bits (20), Expect = 0.26
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 1581 gtacctcggccgngaccacgcta 1603
            |||||||||||| ||||||||||
Sbjct: 364  gtacctcggccgggaccacgcta 386



>gb|AJ770035.1|AJ770035 AJ770035 Populus euphratica leaf 3-6 months, adult Populus euphratica
            cDNA clone P0001100006A08F1, mRNA sequence
          Length = 179

 Score = 40.1 bits (20), Expect = 0.26
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 1581 gtacctcggccgngaccacgcta 1603
            |||||||||||| ||||||||||
Sbjct: 157  gtacctcggccgggaccacgcta 179



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 188,103
Number of Sequences: 369679
Number of extensions: 188103
Number of successful extensions: 51434
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51421
Number of HSP's gapped (non-prelim): 13
length of query: 1603
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1584
effective length of database: 196,384,763
effective search space: 311073464592
effective search space used: 311073464592
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)