BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419355.2.1
(1174 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DV464781.1|DV464781 MTUNUL1.P30.G05 NUL Populus fremonti... 289 1e-076
gb|CK103503.1|CK103503 G120P66.5pR Populus tension wood cDN... 266 2e-069
gb|CK101635.1|CK101635 F104P94.5pR Populus flower cDNA libr... 248 4e-064
gb|DT511247.1|DT511247 WS02429.BR_P06 PTxD-ICC-N-A-14 Popul... 242 3e-062
gb|DT515939.1|DT515939 WS02429.B21.1_P06 PTxD-ICC-N-A-14 Po... 200 9e-050
gb|BI131395.1|BI131395 G120P31Y Populus cambium cDNA librar... 194 5e-048
gb|CK091516.1|CK091516 F104P94.3pR Populus flower cDNA libr... 101 6e-020
gb|CV256387.1|CV256387 WS0243.B21_L09 PTxD-ICC-N-A-14 Popul... 66 3e-009
gb|BU866104.1|BU866104 S062H05 Populus imbibed seed cDNA li... 56 3e-006
gb|DN498699.1|DN498699 S062H05.5pR Populus imbibed seed cDN... 56 3e-006
gb|BI138387.1|BI138387 F104P94Y Populus flower cDNA library... 46 0.003
>gb|DV464781.1|DV464781 MTUNUL1.P30.G05 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 878
Score = 289 bits (146), Expect = 1e-076
Identities = 362/434 (83%)
Strand = Plus / Plus
Query: 6 aaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccccagga 65
||||||||||||||||| || || |||||||||||||| | ||||||||||| |||||
Sbjct: 217 aaatacttcactggtcttctgtcgccatggaaaggcattcttctttttggccctccaggg 276
Query: 66 acaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaac 125
||||||||||||||||| || || ||||| ||||| || ||||||||||| || |||||
Sbjct: 277 acaggaaagacaatgcttgcgaaggcggttgctacagaatgcaaaaccacatttttcaat 336
Query: 126 atttcagcatcatcaattgtcagcaaatggcgtggagattcagagaagcttgtcaaagtt 185
||||||||||| ||| | || ||||| ||||| || |||||||||||| | | || ||
Sbjct: 337 atttcagcatcttcagtggttagcaagtggcggggtgattcagagaagttaataaaggtg 396
Query: 186 ctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgct 245
| ||||||||||||||||| ||||||||||| || ||||| ||||||||||| ||||||
Sbjct: 397 ttatttgagcttgctaggcaccatgcaccatcaactatatttcttgatgaaatcgatgct 456
Query: 246 atcatcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagact 305
|| ||||| || |||||||||||||||||||||||||| || ||| | || ||||||||
Sbjct: 457 attatcagtcaacgtggtgaagctcgcagtgagcatgaagcaagtaggcgtttgaagacc 516
Query: 306 gagctacttattcagatggatggtttgacaaagacaaacgacttggtatttgtacttgca 365
|| || || || |||||||||||||||| |||||||| | || ||||| | |||
Sbjct: 517 gaactgctcatacagatggatggtttgaatcgcacaaacgagctcgtttttgttttggca 576
Query: 366 gctacaaatcttccctgggaattggatgcagccatgctccgccggcttgagaagcggatt 425
|| || ||||| || ||||| ||||||||||| |||||||| || ||||||||||| |||
Sbjct: 577 gcgactaatctcccttgggagttggatgcagctatgctccggcgtcttgagaagcgaatt 636
Query: 426 cttgtaccgcttcc 439
|||||||| |||||
Sbjct: 637 cttgtaccccttcc 650
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 543 tctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
||||||||||||||||| || | |||||||| ||||||||||||||| |||||||
Sbjct: 754 tctggttcagatattcggctattatgcaaagaggctgccatgcaaccattgagacg 809
>gb|CK103503.1|CK103503 G120P66.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G120P66 5', mRNA sequence
Length = 493
Score = 266 bits (134), Expect = 2e-069
Identities = 342/410 (83%), Gaps = 1/410 (0%)
Strand = Plus / Plus
Query: 30 ccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaaaa 89
|||||||||||||| | |||||||||| || ||| ||||||||||||||||| || ||
Sbjct: 9 ccatggaaaggcattcttctttttggcctcc-agggacaggaaagacaatgcttgcgaag 67
Query: 90 gcggtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaattgtcagc 149
||||| ||||| |||||||||||||| || ||||| ||||||||||| ||| | || |||
Sbjct: 68 gcggttgctacagagtgcaaaaccacatttttcaatatttcagcatcttcagtggttagc 127
Query: 150 aaatggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatcat 209
|| ||||| || |||||||||||| | | || || | ||||||||||||||||| |||
Sbjct: 128 aagtggcggggtgattcagagaagttaataaaggtgttatttgagcttgctaggcaccat 187
Query: 210 gcaccatccacaatattccttgatgaaatagatgctatcatcagccagcgtggtgaagct 269
|||||||| || ||||| ||||||||||| |||||||| ||||| || ||||||||||||
Sbjct: 188 gcaccatcaactatatttcttgatgaaatcgatgctattatcagtcaacgtggtgaagct 247
Query: 270 cgcagtgagcatgaggctagtcgtcgcttgaagactgagctacttattcagatggatggt 329
|||||||||||||| || ||| | || ||||||||||| || || || ||||||||||||
Sbjct: 248 cgcagtgagcatgaagcaagtaggcgtttgaagactgaactgctcatacagatggatggt 307
Query: 330 ttgacaaagacaaacgacttggtatttgtacttgcagctacaaatcttccctgggaattg 389
||||| ||| |||| | || ||||| | ||||| || ||||| || ||||| |||
Sbjct: 308 ttgactcgcacagacgagctcgtttttgttttggcagcgactaatctcccttgggagttg 367
Query: 390 gatgcagccatgctccgccggcttgagaagcggattcttgtaccgcttcc 439
|||||||| |||||||| || ||||||||||| ||||||||||| |||||
Sbjct: 368 gatgcagctatgctccggcgtcttgagaagcgcattcttgtaccccttcc 417
>gb|CK101635.1|CK101635 F104P94.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F104P94 5', mRNA sequence
Length = 640
Score = 248 bits (125), Expect = 4e-064
Identities = 279/329 (84%), Gaps = 1/329 (0%)
Strand = Plus / Plus
Query: 6 aaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccccagga 65
||||||||||||||||| || || |||||||||||||| | ||||||||||| ||||||
Sbjct: 182 aaatacttcactggtcttctgtcgccatggaaaggcattcttctttttggccctccagga 241
Query: 66 acaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaac 125
|||| ||||||||||| ||||| || || ||||| |||||||||||||| || |||||
Sbjct: 242 -cagggaagacaatgctcgcaaaggctgttgctacagagtgcaaaaccacatttttcaat 300
Query: 126 atttcagcatcatcaattgtcagcaaatggcgtggagattcagagaagcttgtcaaagtt 185
|| |||||||| ||| | || ||||||||||| || ||||||||||| | | || |||
Sbjct: 301 atctcagcatcttcagtggttagcaaatggcggggtgattcagagaaattaataaaggtt 360
Query: 186 ctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgct 245
| |||||||||||||||||||| |||||||| || ||||| ||||||||||| ||||||
Sbjct: 361 ttatttgagcttgctaggcatcacgcaccatcaactatatttcttgatgaaattgatgct 420
Query: 246 atcatcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagact 305
|| ||||| || |||||||||||| ||||||||||||| || ||| | || |||||||||
Sbjct: 421 attatcagtcaacgtggtgaagctagcagtgagcatgaagcaagtaggcgtttgaagact 480
Query: 306 gagctacttattcagatggatggtttgac 334
|| || || || |||||||||||||||||
Sbjct: 481 gaactgctcatacagatggatggtttgac 509
>gb|DT511247.1|DT511247 WS02429.BR_P06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_P06 5', mRNA sequence
Length = 870
Score = 242 bits (122), Expect = 3e-062
Identities = 239/278 (85%)
Strand = Plus / Plus
Query: 6 aaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccccagga 65
||||||||||||||||| || || |||||||||||||| | ||||||||||| |||||
Sbjct: 584 aaatacttcactggtcttctgtcgccatggaaaggcattcttctttttggccctccaggg 643
Query: 66 acaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaac 125
||||||||||||||||| || || ||||| ||||| |||||||||||||| || |||||
Sbjct: 644 acaggaaagacaatgcttgcgaaggcggttgctacagagtgcaaaaccacatttttcaat 703
Query: 126 atttcagcatcatcaattgtcagcaaatggcgtggagattcagagaagcttgtcaaagtt 185
||||||||||| ||| | || ||||| ||||| || |||||||||||| | | || ||
Sbjct: 704 atttcagcatcttcagtggttagcaagtggcggggtgattcagagaagttaataaaggtg 763
Query: 186 ctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgct 245
| ||||||||||||||||| ||||||||||| || ||||| ||||||||||| ||||||
Sbjct: 764 ttatttgagcttgctaggcaccatgcaccatcaactatatttcttgatgaaatcgatgct 823
Query: 246 atcatcagccagcgtggtgaagctcgcagtgagcatga 283
|| ||||| || ||||||||||||||||||||||||||
Sbjct: 824 attatcagtcaacgtggtgaagctcgcagtgagcatga 861
>gb|DT515939.1|DT515939 WS02429.B21.1_P06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_P06 3', mRNA sequence
Length = 861
Score = 200 bits (101), Expect = 9e-050
Identities = 275/333 (82%)
Strand = Plus / Minus
Query: 107 caaaaccaccttcttcaacatttcagcatcatcaattgtcagcaaatggcgtggagattc 166
||||||||| || ||||| ||||||||||| ||| | || ||||| ||||| || |||||
Sbjct: 861 caaaaccacatttttcaatatttcagcatcttcagtggttagcaagtggcggggtgattc 802
Query: 167 agagaagcttgtcaaagttctgtttgagcttgctaggcatcatgcaccatccacaatatt 226
||||||| | | || || | |||||||||| |||||| ||||||||||| || |||||
Sbjct: 801 agagaagttaataaaggtgttatttgagcttgttaggcaccatgcaccatcaactatatt 742
Query: 227 ccttgatgaaatagatgctatcatcagccagcgtggtgaagctcgcagtgagcatgaggc 286
||||||||||| |||||||| ||||| || |||||||||||||||||||||||||| ||
Sbjct: 741 tcttgatgaaatcgatgctattatcagtcaacgtggtgaagctcgcagtgagcatgaagc 682
Query: 287 tagtcgtcgcttgaagactgagctacttattcagatggatggtttgacaaagacaaacga 346
||| | || |||||||| || || || || ||||||||||||||||| ||||||||
Sbjct: 681 aagtaggcgtttgaagaccgaactgctcatacagatggatggtttgactcgcacaaacga 622
Query: 347 cttggtatttgtacttgcagctacaaatcttccctgggaattggatgcagccatgctccg 406
| || ||||| | ||||| || ||||| || ||||| ||||||||||| ||||||||
Sbjct: 621 gctcgtttttgttttggcagcgactaatctcccttgggagttggatgcagctatgctccg 562
Query: 407 ccggcttgagaagcggattcttgtaccgcttcc 439
|| ||||||||||| ||||||||||| |||||
Sbjct: 561 gcgtcttgagaagcgaattcttgtaccccttcc 529
Score = 65.9 bits (33), Expect = 3e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 534 gaaggttactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactg 593
||||||| ||||||||||||||||| || | |||||||| ||||||||||||||| ||
Sbjct: 434 gaaggtttttctggttcagatattcggctattatgcaaagaggctgccatgcaaccattg 375
Query: 594 agacg 598
|||||
Sbjct: 374 agacg 370
>gb|BI131395.1|BI131395 G120P31Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 301
Score = 194 bits (98), Expect = 5e-048
Identities = 238/281 (84%), Gaps = 4/281 (1%)
Strand = Plus / Plus
Query: 30 ccatggaaaggca--tcttactttttggccccccaggaacaggaaagacaatgctggcaa 87
||||||||||||| |||| ||||||||||| ||||| ||||||||||||||||| || |
Sbjct: 9 ccatggaaaggcagttctt-ctttttggccctccagggacaggaaagacaatgcttgcga 67
Query: 88 aagcggtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaattgtca 147
| ||||| ||||| |||||||||||||| || |||| ||||||||||| ||| | || |
Sbjct: 68 aggcggttgctacagagtgcaaaaccacatttttcagtatttcagcatcttcagtggtta 127
Query: 148 gcaaatggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatc 207
|||| ||||| || |||||||||||| | | || || | ||||||||||||||||| |
Sbjct: 128 gcaagtggcggggtgattcagagaagttaataaaggtgttatttgagcttgctaggcacc 187
Query: 208 atgcaccatccacaatattccttg-atgaaatagatgctatcatcagccagcgtggtgaa 266
|||||||||| || ||||| |||| ||||||| |||||||| ||||| || |||||||||
Sbjct: 188 atgcaccatcaactatatttcttgcatgaaatcgatgctattatcagtcaacgtggtgaa 247
Query: 267 gctcgcagtgagcatgaggctagtcgtcgcttgaagactga 307
||||||||||||||||| || ||| | || |||||||||||
Sbjct: 248 gctcgcagtgagcatgaagcaagtaggcgtttgaagactga 288
>gb|CK091516.1|CK091516 F104P94.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F104P94 3', mRNA sequence
Length = 766
Score = 101 bits (51), Expect = 6e-020
Identities = 147/179 (82%)
Strand = Plus / Minus
Query: 261 ggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagactgagctacttattcag 320
||||||||| ||||||||||||| || ||| | || ||||||||||| || || || |||
Sbjct: 766 ggtgaagctagcagtgagcatgaagcaagtaggcgtttgaagactgaactgctcatacag 707
Query: 321 atggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatcttccc 380
|||||||||||||| ||||| || | || ||||| | || || || ||||| ||
Sbjct: 706 atggatggtttgactcgcacaaaggagcttgtttttgttttggcggcgactaatctccct 647
Query: 381 tgggaattggatgcagccatgctccgccggcttgagaagcggattcttgtaccgcttcc 439
|||||||||||||| ||||||||||| || ||||||||||| ||||||||||| |||||
Sbjct: 646 tgggaattggatgcggccatgctccggcgtcttgagaagcgaattcttgtaccccttcc 588
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 543 tctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| || || | |||||||| ||||||||||||||| |||||||
Sbjct: 484 tctggttcagatatccggctattatgcaaagaggctgccatgcaaccattgagacg 429
>gb|CV256387.1|CV256387 WS0243.B21_L09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0243_L09 3', mRNA sequence
Length = 787
Score = 65.9 bits (33), Expect = 3e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 534 gaaggttactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactg 593
||||||| ||||||||||||||||| || | |||||||| ||||||||||||||| ||
Sbjct: 435 gaaggtttttctggttcagatattcggctattatgcaaagaggctgccatgcaaccattg 376
Query: 594 agacg 598
|||||
Sbjct: 375 agacg 371
>gb|BU866104.1|BU866104 S062H05 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 699
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 48 ctttttggccccccaggaacaggaaagacaatgctggcaaaagc 91
||||||||||| || ||||| || ||||||||||||||||||||
Sbjct: 348 ctttttggccctcctggaactgggaagacaatgctggcaaaagc 391
>gb|DN498699.1|DN498699 S062H05.5pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S062H05 5', mRNA sequence
Length = 787
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 48 ctttttggccccccaggaacaggaaagacaatgctggcaaaagc 91
||||||||||| || ||||| || ||||||||||||||||||||
Sbjct: 346 ctttttggccctcctggaactgggaagacaatgctggcaaaagc 389
>gb|BI138387.1|BI138387 F104P94Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 195
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 6 aaatacttcactggtctcctttctccatggaaagg 40
||||||||||||||||| || || |||||||||||
Sbjct: 161 aaatacttcactggtcttctgtcgccatggaaagg 195
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 143,553
Number of Sequences: 369679
Number of extensions: 143553
Number of successful extensions: 38592
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38560
Number of HSP's gapped (non-prelim): 28
length of query: 1174
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1155
effective length of database: 196,384,763
effective search space: 226824401265
effective search space used: 226824401265
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)