BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418885.2.3
(568 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU895280.1|BU895280 X021G07 Populus wood cDNA library Po... 38 0.35
gb|DN492470.1|DN492470 X021G07.3pR Populus wood cDNA librar... 38 0.35
gb|DN502512.1|DN502512 X021G07.5pR Populus wood cDNA librar... 38 0.35
>gb|BU895280.1|BU895280 X021G07 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 527
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 63 gccctataatatatataga 81
|||||||||||||||||||
Sbjct: 332 gccctataatatatataga 314
>gb|DN492470.1|DN492470 X021G07.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X021G07 3', mRNA sequence
Length = 511
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 63 gccctataatatatataga 81
|||||||||||||||||||
Sbjct: 181 gccctataatatatataga 199
>gb|DN502512.1|DN502512 X021G07.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X021G07 5', mRNA sequence
Length = 523
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 63 gccctataatatatataga 81
|||||||||||||||||||
Sbjct: 331 gccctataatatatataga 313
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74,101
Number of Sequences: 369679
Number of extensions: 74101
Number of successful extensions: 19660
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19657
Number of HSP's gapped (non-prelim): 3
length of query: 568
length of database: 203,408,664
effective HSP length: 19
effective length of query: 549
effective length of database: 196,384,763
effective search space: 107815234887
effective search space used: 107815234887
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)