BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418861.2.1
(614 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA927208.1|CA927208 MTU6CR.P6.C08 Aspen root cDNA Librar... 157 6e-037
gb|DT506827.1|DT506827 WS02416.BR_J23 PTxD-ICC-N-A-14 Popul... 149 1e-034
gb|CX173575.1|CX173575 F02_69-47_12.ab1 leaf inoculated wit... 105 2e-021
gb|CX179995.1|CX179995 E03_45-30_09.ab1 leaf inoculated wit... 105 2e-021
gb|CF936952.1|CF936952 PO3012D09 Populus tomentiglandulosa ... 98 5e-019
gb|CX184516.1|CX184516 A02_45-70_02.ab1 leaf inoculated wit... 92 3e-017
gb|CX178726.1|CX178726 F03_45-1_11.ab1 leaf inoculated with... 90 1e-016
gb|CX185263.1|CX185263 C10_45-118_06.ab1 leaf inoculated wi... 90 1e-016
gb|CX186437.1|CX186437 E12_45-118_10.ab1 leaf inoculated wi... 90 1e-016
gb|BU824485.1|BU824485 UB64CPG12 Populus tremula cambium cD... 76 2e-012
gb|CN518640.1|CN518640 GQ0103.B3_B21 GQ010 Populus trichoca... 74 7e-012
gb|AJ776901.1|AJ776901 AJ776901 Populus euphratica root 3-6... 66 2e-009
gb|CV268173.1|CV268173 WS0204.B21_M02 PTxN-IB-N-A-11 Populu... 66 2e-009
gb|DT511495.1|DT511495 WS02416.B21_J23 PTxD-ICC-N-A-14 Popu... 64 7e-009
gb|BI139024.1|BI139024 F121P45Y Populus flower cDNA library... 62 3e-008
gb|DT519151.1|DT519151 WS02440.B21_H07 PTxD-ICC-N-A-14 Popu... 54 6e-006
gb|CK101331.1|CK101331 F040P93.5pR Populus flower cDNA libr... 52 3e-005
gb|DT523499.1|DT523499 WS02039.B21_N19 PTxN-IB-N-A-11 Popul... 42 0.024
>gb|CA927208.1|CA927208 MTU6CR.P6.C08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 684
Score = 157 bits (79), Expect = 6e-037
Identities = 295/367 (80%)
Strand = Plus / Minus
Query: 244 ctgatatggttaataaatactatgatcttgccactagcttctatgagtatggttggggtg 303
|||| ||||| |||||||| |||||||||| || || || ||||||| ||| ||||| |
Sbjct: 656 ctgacatggtaaataaatattatgatcttgttaccagtttttatgagtttggctgggggg 597
Query: 304 aatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatcaagcgac 363
| || ||||| ||||| | ||||| || || || || | ||||| |||||||||||||
Sbjct: 596 agtctttccattttgcacccagattcaaaggggagtctctccgtgagagcatcaagcgac 537
Query: 364 atgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttttagatgtgg 423
||||||| |||||||| |||| ||||| ||||||| ||| ||||||||| ||||| |
Sbjct: 536 atgagcactttcttgctttgcagcttggcctgaaacctggacagaaggttttggatgtag 477
Query: 424 gctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttcagttaccg 483
| |||||||| |||||||| || ||||||||||| |||| |||||||| ||||| || |
Sbjct: 476 gatgtggaattggtggacctcttagagaaattgcgcgattcagctcaacatcagtaacag 417
Query: 484 gattgaataacaacgaataccagataaccaggggaaaggagctcaaccgtttagcaggaa 543
| ||||| |||||||| || |||||| | ||||||||||| ||||| || | ||||||
Sbjct: 416 ggttgaacaacaacgagtatcagatatcaaggggaaaggaactcaatcgcattgcaggag 357
Query: 544 ttagtggaacatgtgattttgtcaaggcggacttcatgaagatgccgttcgatgacaaca 603
|| | |||||||||||||| ||||| || |||||||| ||||| ||| ||| ||||
Sbjct: 356 ttgacaggacatgtgattttgtgaaggctgatttcatgaaaatgccattccctgataaca 297
Query: 604 cttttga 610
||||||
Sbjct: 296 gttttga 290
>gb|DT506827.1|DT506827 WS02416.BR_J23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_J23 5', mRNA sequence
Length = 861
Score = 149 bits (75), Expect = 1e-034
Identities = 294/367 (80%)
Strand = Plus / Plus
Query: 244 ctgatatggttaataaatactatgatcttgccactagcttctatgagtatggttggggtg 303
|||| ||||| |||||||| |||||||||| || || || ||||||| || ||||| |
Sbjct: 370 ctgacatggtaaataaatattatgatcttgttaccagtttttatgagttcggctgggggg 429
Query: 304 aatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatcaagcgac 363
| || ||||| ||||| | ||||| || || || || | ||||| |||||||||||||
Sbjct: 430 agtctttccattttgcacccagattcaaaggggagtctctccgtgagagcatcaagcgac 489
Query: 364 atgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttttagatgtgg 423
||||||| |||||||| |||||||||| ||||||| ||| ||||||||| ||||| |
Sbjct: 490 atgagcactttcttgctttgcaacttggcctgaaacctggacagaaggttttggatgtag 549
Query: 424 gctgtggaataggtggaccactgagagaaattgcaagatttagctcaacttcagttaccg 483
| |||||||| |||||||| || ||||||||||| |||| |||||||| ||||| || |
Sbjct: 550 gatgtggaattggtggacctcttagagaaattgcgcgattcagctcaacatcagtaacag 609
Query: 484 gattgaataacaacgaataccagataaccaggggaaaggagctcaaccgtttagcaggaa 543
| ||||| |||||||| || |||||| | ||||||||||| ||||| || | ||||||
Sbjct: 610 ggttgaacaacaacgagtatcagatatcaaggggaaaggaactcaatcgcattgcaggag 669
Query: 544 ttagtggaacatgtgattttgtcaaggcggacttcatgaagatgccgttcgatgacaaca 603
|| | |||||||||||| | ||||| || |||||||| ||||| ||| ||| ||||
Sbjct: 670 ttgacaggacatgtgattttttgaaggctgatttcatgaaaatgccattccctgataaca 729
Query: 604 cttttga 610
||||||
Sbjct: 730 gttttga 736
>gb|CX173575.1|CX173575 F02_69-47_12.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 695
Score = 105 bits (53), Expect = 2e-021
Identities = 230/289 (79%)
Strand = Plus / Plus
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
||||||| |||| |||||||||||||| |||||||||| || ||||| ||||||| ||
Sbjct: 297 ccaactactctgacatggttaataaatattatgatcttgttaccagcttttatgagtttg 356
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| || || ||||| ||||||| |||| || || || || | || || ||||
Sbjct: 357 gctggggggagtctttccattttgctcctagattcaaaggggagtctcttcgcgagagca 416
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
||||||||||||| || ||||| || | |||||||| ||||||| ||| |||||| |
Sbjct: 417 tcaagcgacatgaacactttctcgctttacaacttggcctgaaacctggacagaaggtgt 476
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaactt 474
| ||||| || |||||||| || ||||| | ||||||||||| |||| |||||||| |
Sbjct: 477 tggatgtaggatgtggaattggcggacctttaagagaaattgctcgattcagctcaacat 536
Query: 475 cagttaccggattgaataacaacgaataccagataaccaggggaaagga 523
|||| || || ||||| ||||| || || |||||| | |||||||||||
Sbjct: 537 cagtaacagggttgaacaacaatgagtatcagatatcaaggggaaagga 585
>gb|CX179995.1|CX179995 E03_45-30_09.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 622
Score = 105 bits (53), Expect = 2e-021
Identities = 230/289 (79%)
Strand = Plus / Plus
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
||||||| |||| |||||||||||||| |||||||||| || ||||| ||||||| ||
Sbjct: 290 ccaactactctgacatggttaataaatattatgatcttgttaccagcttttatgagtttg 349
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| || || ||||| ||||||| |||| || || || || | || || ||||
Sbjct: 350 gctggggggagtctttccattttgctcctagattcaaaggggagtctcttcgcgagagca 409
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
||||||||||||| || ||||| || | |||||||| ||||||| ||| |||||| |
Sbjct: 410 tcaagcgacatgaacactttctcgctttacaacttggcctgaaacctggacagaaggtgt 469
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaactt 474
| ||||| || |||||||| || ||||| | ||||||||||| |||| |||||||| |
Sbjct: 470 tggatgtaggatgtggaattggcggacctttaagagaaattgctcgattcagctcaacat 529
Query: 475 cagttaccggattgaataacaacgaataccagataaccaggggaaagga 523
|||| || || ||||| ||||| || || |||||| | |||||||||||
Sbjct: 530 cagtaacagggttgaacaacaatgagtatcagatatcaaggggaaagga 578
>gb|CF936952.1|CF936952 PO3012D09 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 1079
Score = 97.6 bits (49), Expect = 5e-019
Identities = 229/289 (79%)
Strand = Plus / Plus
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
||||||| |||| |||||||||||||| |||||||||| || ||||| ||||||| ||
Sbjct: 233 ccaactactctgacatggttaataaatattatgatcttgttaccagcttttatgagtttg 292
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| || || ||||| | ||||| |||| || || || || | || || ||||
Sbjct: 293 gctggggggagtctttccattctgctcctagattcaaaggggagtctcttcgcgagagca 352
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
||||||||||||| || |||||||| | |||||||| ||||||| ||| |||||| |
Sbjct: 353 tcaagcgacatgaacactttcttgctttacaacttggcctgaaacctggacagaaggtgt 412
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaactt 474
| ||||| || |||||||| || || || | ||||||||||| |||| |||||||| |
Sbjct: 413 tggatgtaggatgtggaattggcgggcctttaagagaaattgctcgattcagctcaacat 472
Query: 475 cagttaccggattgaataacaacgaataccagataaccaggggaaagga 523
|||| || || ||||| ||||| || || |||||| | |||||||||||
Sbjct: 473 cagtaacagggttgaacaacaatgagtatcagatatcaaggggaaagga 521
>gb|CX184516.1|CX184516 A02_45-70_02.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 746
Score = 91.7 bits (46), Expect = 3e-017
Identities = 228/289 (78%)
Strand = Plus / Plus
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
||||||| |||| |||||||||||||| |||||||||| || ||||| ||||||| ||
Sbjct: 318 ccaactactctgacatggttaataaatattatgatcttgttaccagcttttatgagtttg 377
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| || || ||||| ||||||| |||| || || || || | || || ||||
Sbjct: 378 gctggggggagtctttccattttgctcctagattcaaaggggagtctcttcgcgagagca 437
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| ||||||||||| || ||||| || | |||||||| ||||||| ||| |||||| |
Sbjct: 438 ttaagcgacatgaacactttctcgctttacaacttggcctgaaacctggacagaaggtgt 497
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaactt 474
| ||||| || |||||||| || || || | ||||||||||| |||| |||||||| |
Sbjct: 498 tggatgtaggatgtggaattggcgggcctttaagagaaattgctcgattcagctcaacat 557
Query: 475 cagttaccggattgaataacaacgaataccagataaccaggggaaagga 523
|||| || || ||||| ||||| || || |||||| ||||||||||||
Sbjct: 558 cagtaacagggttgaacaacaatgagtatcagatatncaggggaaagga 606
>gb|CX178726.1|CX178726 F03_45-1_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 619
Score = 89.7 bits (45), Expect = 1e-016
Identities = 228/289 (78%)
Strand = Plus / Plus
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
||||||| |||| |||||||||||||| |||||||||| || ||||| ||||||| ||
Sbjct: 299 ccaactactctgacatggttaataaatattatgatcttgttaccagcttttatgagtttg 358
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| || || ||||| ||||||| |||| || || || || | || || ||||
Sbjct: 359 gctggggggagtctttccattttgctcctagattcaaaggggagtctcttcgcgagagca 418
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| ||||||||||| || ||||| || | |||||||| ||||||| ||| |||||| |
Sbjct: 419 ttaagcgacatgaacactttctcgctttacaacttggcctgaaacctggacagaaggtgt 478
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaactt 474
| ||||| || |||||||| || || || | ||||||||||| |||| |||||||| |
Sbjct: 479 tggatgtaggatgtggaattggcgggcctttaagagaaattgctcgattcagctcaacat 538
Query: 475 cagttaccggattgaataacaacgaataccagataaccaggggaaagga 523
|||| || || ||||| ||||| || || |||||| | |||||||||||
Sbjct: 539 cagtaacagggttgaacaacaatgagtatcagatatcaaggggaaagga 587
>gb|CX185263.1|CX185263 C10_45-118_06.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 660
Score = 89.7 bits (45), Expect = 1e-016
Identities = 228/289 (78%)
Strand = Plus / Plus
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
||||||| |||| |||||||||||||| |||||||||| || ||||| ||||||| ||
Sbjct: 306 ccaactactctgacatggttaataaatattatgatcttgttaccagcttttatgagtttg 365
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| || || ||||| ||||||| |||| || || || || | || || ||||
Sbjct: 366 gctggggggagtctttccattttgctcctagattcaaaggggagtctcttcgcgagagca 425
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| ||||||||||| || ||||| || | |||||||| ||||||| ||| |||||| |
Sbjct: 426 ttaagcgacatgaacactttctcgctttacaacttggcctgaaacctggacagaaggtgt 485
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaactt 474
| ||||| || |||||||| || || || | ||||||||||| |||| |||||||| |
Sbjct: 486 tggatgtaggatgtggaattggcgggcctttaagagaaattgctcgattcagctcaacat 545
Query: 475 cagttaccggattgaataacaacgaataccagataaccaggggaaagga 523
|||| || || ||||| ||||| || || |||||| | |||||||||||
Sbjct: 546 cagtaacagggttgaacaacaatgagtatcagatatcaaggggaaagga 594
>gb|CX186437.1|CX186437 E12_45-118_10.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 669
Score = 89.7 bits (45), Expect = 1e-016
Identities = 228/289 (78%)
Strand = Plus / Plus
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
||||||| |||| |||||||||||||| |||||||||| || ||||| ||||||| ||
Sbjct: 306 ccaactactctgacatggttaataaatattatgatcttgttaccagcttttatgagtttg 365
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| || || ||||| ||||||| |||| || || || || | || || ||||
Sbjct: 366 gctggggggagtctttccattttgctcctagattcaaaggggagtctcttcgcgagagca 425
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| ||||||||||| || ||||| || | |||||||| ||||||| ||| |||||| |
Sbjct: 426 ttaagcgacatgaacactttctcgctttacaacttggcctgaaacctggacagaaggtgt 485
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctcaactt 474
| ||||| || |||||||| || || || | ||||||||||| |||| |||||||| |
Sbjct: 486 tggatgtaggatgtggaattggcgggcctttaagagaaattgctcgattcagctcaacat 545
Query: 475 cagttaccggattgaataacaacgaataccagataaccaggggaaagga 523
|||| || || ||||| ||||| || || |||||| | |||||||||||
Sbjct: 546 cagtaacagggttgaacaacaatgagtatcagatatcaaggggaaagga 594
>gb|BU824485.1|BU824485 UB64CPG12 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 438
Score = 75.8 bits (38), Expect = 2e-012
Identities = 158/198 (79%)
Strand = Plus / Plus
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
||||||| |||| |||||||||||||| |||||||||| || ||||| ||||||| ||
Sbjct: 241 ccaactactctgacatggttaataaatattatgatcttgttaccagcttttatgagtttg 300
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| || || ||||| ||||||| |||| || || || || | || || ||||
Sbjct: 301 gctggggggagtctttccattttgctcctagattcaaaggggagtctcttcgcgagagca 360
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
||||||||||||| || |||||||| | |||||||| ||||||| ||| |||||| |
Sbjct: 361 tcaagcgacatgaacactttcttgctttacaacttggcctgaaacctggacagaaggtgt 420
Query: 415 tagatgtgggctgtggaa 432
| ||||| || |||||||
Sbjct: 421 tggatgtaggatgtggaa 438
>gb|CN518640.1|CN518640 GQ0103.B3_B21 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0103_B21 5', mRNA sequence
Length = 280
Score = 73.8 bits (37), Expect = 7e-012
Identities = 139/173 (80%)
Strand = Plus / Plus
Query: 351 agcatcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaag 410
||||||||||||||||| || ||||| || | |||||||| ||||||| ||| ||||
Sbjct: 45 agcatcaagcgacatgaacactttctcgctttacaacttggcctgaaacctggacagaag 104
Query: 411 gttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctca 470
|| || ||||| || |||||||| || || || | ||||||||||| |||| ||||||
Sbjct: 105 gtgttggatgtaggatgtggaattggcgggcctttaagagaaattgctcgattcagctca 164
Query: 471 acttcagttaccggattgaataacaacgaataccagataaccaggggaaagga 523
|| ||||| || || ||||| ||||| || || |||||| | |||||||||||
Sbjct: 165 acatcagtaacagggttgaacaacaatgagtatcagatatcaaggggaaagga 217
>gb|AJ776901.1|AJ776901 AJ776901 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400020B02F1, mRNA sequence
Length = 446
Score = 65.9 bits (33), Expect = 2e-009
Identities = 108/133 (81%)
Strand = Plus / Plus
Query: 244 ctgatatggttaataaatactatgatcttgccactagcttctatgagtatggttggggtg 303
|||| |||||||||||||| |||||||||| || ||||| ||||||| ||| ||||| |
Sbjct: 275 ctgacatggttaataaatattatgatcttgttaccagcttttatgagtttggctgggggg 334
Query: 304 aatccttccactttgctcacagatggaatggagaatccttacgtgaaagcatcaagcgac 363
| || ||||| ||||||| ||||| || || || || | || || |||||||||||||
Sbjct: 335 agtctttccattttgctcccagattcaaaggggagtctcttcgcgagagcatcaagcgac 394
Query: 364 atgagcattttct 376
|||| || |||||
Sbjct: 395 atgaacactttct 407
>gb|CV268173.1|CV268173 WS0204.B21_M02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0204_M02 3', mRNA sequence
Length = 911
Score = 65.9 bits (33), Expect = 2e-009
Identities = 138/173 (79%)
Strand = Plus / Plus
Query: 351 agcatcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaag 410
||||| ||||||||||| || ||||| || | |||||||| ||||||| ||| ||||
Sbjct: 643 agcattaagcgacatgaacactttctcgctttacaacttggcctgaaacctggacagaag 702
Query: 411 gttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagatttagctca 470
|| || ||||| || |||||||| || || || | ||||||||||| |||| ||||||
Sbjct: 703 gtgttggatgtaggatgtggaattggcgggcctttaagagaaattgctcgattcagctca 762
Query: 471 acttcagttaccggattgaataacaacgaataccagataaccaggggaaagga 523
|| ||||| || || ||||| ||||| || || |||||| | |||||||||||
Sbjct: 763 acatcagtaacagggttgaacaacaatgagtatcagatatcaaggggaaagga 815
>gb|DT511495.1|DT511495 WS02416.B21_J23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_J23 3', mRNA sequence
Length = 910
Score = 63.9 bits (32), Expect = 7e-009
Identities = 131/164 (79%)
Strand = Plus / Minus
Query: 447 agagaaattgcaagatttagctcaacttcagttaccggattgaataacaacgaataccag 506
||||||||||| |||| |||||||| ||||| || || ||||| |||||||| || |||
Sbjct: 909 agagaaattgcgcgattcagctcaacatcagtaacagggttgaacaacaacgagtatcag 850
Query: 507 ataaccaggggaaaggagctcaaccgtttagcaggaattagtggaacatgtgattttgtc 566
||| | ||||||||||| ||||| || | |||||| || | |||||||||||| |
Sbjct: 849 atatcaaggggaaaggaactcaatcgcattgcaggagttgacaggacatgtgattttttg 790
Query: 567 aaggcggacttcatgaagatgccgttcgatgacaacacttttga 610
||||| || |||||||| ||||| ||| ||| |||| ||||||
Sbjct: 789 aaggctgatttcatgaaaatgccattccctgataacagttttga 746
>gb|BI139024.1|BI139024 F121P45Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 403
Score = 61.9 bits (31), Expect = 3e-008
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
||||||| |||| |||||||||||||| |||||||||| || ||||| ||||||| ||
Sbjct: 261 ccaactactctgacatggttaataaatattatgatcttgttaccagcttttatgagtttg 320
Query: 295 gttggggtgaatccttccactttgctc 321
| ||||| || || ||||| |||||||
Sbjct: 321 gctggggggagtctttccattttgctc 347
>gb|DT519151.1|DT519151 WS02440.B21_H07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_H07 3', mRNA sequence
Length = 900
Score = 54.0 bits (27), Expect = 6e-006
Identities = 120/151 (79%)
Strand = Plus / Minus
Query: 460 gatttagctcaacttcagttaccggattgaataacaacgaataccagataaccaggggaa 519
|||| |||||||| ||||| || || ||||| |||||||| || |||||| | |||||||
Sbjct: 896 gattcagctcaacatcagtaacagggttgaacaacaacgagtatcagatatcaaggggaa 837
Query: 520 aggagctcaaccgtttagcaggaattagtggaacatgtgattttgtcaaggcggacttca 579
|||| ||||| || | |||||| || | |||||||||||| | ||||| || ||||
Sbjct: 836 aggaactcaatcgcattgcaggagttgacaggacatgtgattttttgaaggctgatttca 777
Query: 580 tgaagatgccgttcgatgacaacacttttga 610
|||| ||||| ||| ||| |||| ||||||
Sbjct: 776 tgaaaatgccattccctgataacagttttga 746
>gb|CK101331.1|CK101331 F040P93.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F040P93 5', mRNA sequence
Length = 370
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 244 ctgatatggttaataaatactatgatcttgccactagcttctatgagtatggttgggg 301
|||| |||||||||||||| |||||||||| || ||||| ||||||| |||| ||||
Sbjct: 270 ctgacatggttaataaatattatgatcttgttaccagcttttatgagtttggtggggg 327
>gb|DT523499.1|DT523499 WS02039.B21_N19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02039_N19 3', mRNA sequence
Length = 973
Score = 42.1 bits (21), Expect = 0.024
Identities = 64/77 (83%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 447 agagaaattgcaagatttagctcaacttcagttaccggattgaataacaacgaataccag 506
||||||||||| |||| |||||||| ||||| || || ||||| ||||| || || |||
Sbjct: 964 agagaaattgctcgattcagctcaacatcagtaacagg-ttgaacaacaatgagtatcag 906
Query: 507 ataaccaggggaaagga 523
||| | |||||||||||
Sbjct: 905 atatcaaggggaaagga 889
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 63,384
Number of Sequences: 369679
Number of extensions: 63384
Number of successful extensions: 17803
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17764
Number of HSP's gapped (non-prelim): 39
length of query: 614
length of database: 203,408,664
effective HSP length: 19
effective length of query: 595
effective length of database: 196,384,763
effective search space: 116848933985
effective search space used: 116848933985
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)