BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405245.2.2
(616 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU877511.1|BU877511 V035D08 Populus flower cDNA library ... 62 3e-008
gb|CV234476.1|CV234476 WS01215.B21.1_B04 PT-GT-FL-A-3 Popul... 62 3e-008
gb|CV271206.1|CV271206 WS0154.B21_B06 PTxN-IB-A-6 Populus t... 62 3e-008
gb|DT491048.1|DT491048 WS02546.C21.1_K16 PT-MB-N-A-15 Popul... 62 3e-008
gb|DT508597.1|DT508597 WS02421.BR_G17 PTxD-ICC-N-A-14 Popul... 62 3e-008
gb|DT513205.1|DT513205 WS02421.B21_G17 PTxD-ICC-N-A-14 Popu... 62 3e-008
gb|CA932889.1|CA932889 MTU5CS.P18.G09 Aspen stem cDNA Libra... 60 1e-007
gb|CA932963.1|CA932963 MTU5CS.P1.G02 Aspen stem cDNA Librar... 60 1e-007
gb|CA933696.1|CA933696 MTU3TS.P11.B12 Aspen stem cDNA Libra... 60 1e-007
gb|CF119975.1|CF119975 MTU10CS.P8.G01 Aspen stem cDNA Libra... 60 1e-007
gb|CA933142.1|CA933142 MTU5CS.P4.A06 Aspen stem cDNA Librar... 58 4e-007
gb|CA933190.1|CA933190 MTU5CS.P4.F06 Aspen stem cDNA Librar... 58 4e-007
gb|CV232692.1|CV232692 WS0198.B21_F23 PT-DX-N-A-10 Populus ... 56 2e-006
gb|AI166760.1|AI166760 xylem.est.560 Poplar xylem Lambda ZA... 54 6e-006
gb|CV273760.1|CV273760 WS01712.B21_B07 PTxD-NR-A-8 Populus ... 54 6e-006
gb|CX657939.1|CX657939 PO01007C04 Poplar SC cDNA library Po... 54 6e-006
gb|BP934051.1|BP934051 BP934051 full-length enriched poplar... 54 6e-006
gb|CF231420.1|CF231420 PtaC0021C1C0105 Poplar cDNA library ... 50 1e-004
gb|CA932913.1|CA932913 MTU5CS.P1.B02 Aspen stem cDNA Librar... 48 4e-004
gb|CA934408.1|CA934408 MTU3TS.P7.C03 Aspen stem cDNA Librar... 48 4e-004
gb|CF118862.1|CF118862 MTU10CS.P10.D03 Aspen stem cDNA Libr... 48 4e-004
gb|AJ776963.1|AJ776963 AJ776963 Populus euphratica root 3-6... 48 4e-004
gb|CV227643.1|CV227643 WS0167.B21_M15 PT-DX-A-7 Populus tri... 48 4e-004
gb|CV231395.1|CV231395 WS0194.B21_G18 PT-DX-N-A-10 Populus ... 48 4e-004
gb|CV234536.1|CV234536 WS01215.B21.1_E02 PT-GT-FL-A-3 Popul... 48 4e-004
gb|CV243357.1|CV243357 WS02518.B21_K07 PT-MB-N-A-15 Populus... 48 4e-004
gb|CV245420.1|CV245420 WS0257.B21_F22 PT-MB-N-A-15 Populus ... 48 4e-004
gb|CV268719.1|CV268719 WS0206.B21_E05 PTxN-IB-N-A-11 Populu... 48 4e-004
gb|CV274430.1|CV274430 WS0173.B21_E02 PTxD-NR-A-8 Populus t... 48 4e-004
gb|CV283637.1|CV283637 WS0187.B21_O02 PTxD-IL-N-A-9 Populus... 48 4e-004
gb|BP935337.1|BP935337 BP935337 full-length enriched poplar... 48 4e-004
gb|BP936999.1|BP936999 BP936999 full-length enriched poplar... 48 4e-004
gb|DT521317.1|DT521317 WS02033.B21_P13 PTxN-IB-N-A-11 Popul... 48 4e-004
gb|AY466400.1| Populus tomentosa UDP-glucose dehydrogenase ... 48 4e-004
gb|BI128491.1|BI128491 G076P86Y Populus cambium cDNA librar... 46 0.002
gb|BI130408.1|BI130408 G105P23Y Populus cambium cDNA librar... 46 0.002
gb|BI130554.1|BI130554 G107P25Y Populus cambium cDNA librar... 46 0.002
gb|BU816357.1|BU816357 N063F12 Populus bark cDNA library Po... 46 0.002
gb|BU889579.1|BU889579 P022G08 Populus petioles cDNA librar... 46 0.002
gb|BU893049.1|BU893049 P072F05 Populus petioles cDNA librar... 46 0.002
gb|CF229213.1|CF229213 PtaXM0022F3F0311 Poplar cDNA library... 46 0.002
gb|CF231992.1|CF231992 PtaJXO0005C11C1105 Poplar cDNA libra... 46 0.002
gb|CF233354.1|CF233354 PtaJXO0022C6C0606 Poplar cDNA librar... 46 0.002
gb|CF233598.1|CF233598 PtaJXO0025E12E1210 Poplar cDNA libra... 46 0.002
gb|CF234142.1|CF234142 PtaJXO3A3A0301 Poplar cDNA library f... 46 0.002
gb|CF234144.1|CF234144 PtaJXO3A5A0501 Poplar cDNA library f... 46 0.002
gb|CF235453.1|CF235453 PtaJXT0023A12A1202 Poplar cDNA libra... 46 0.002
gb|CF237119.1|CF237119 Ptajxtjxt2C3C0305 Poplar cDNA librar... 46 0.002
gb|CF237298.1|CF237298 Ptajxtjxt4D5D0507 Poplar cDNA librar... 46 0.002
gb|CK093704.1|CK093704 G130P23.3pR Populus tension wood cDN... 46 0.002
gb|CK103138.1|CK103138 G105P23.5pR Populus tension wood cDN... 46 0.002
gb|CK107953.1|CK107953 G060P76 Populus tension wood cDNA li... 46 0.002
gb|CK110314.1|CK110314 N055E10 Populus bark cDNA library Po... 46 0.002
gb|CV225532.1|CV225532 WS0161.B21_K20 PT-DX-A-7 Populus tri... 46 0.002
gb|CV229702.1|CV229702 WS01914.B21_C18 PT-DX-N-A-10 Populus... 46 0.002
gb|AI166122.1|AI166122 B008P71U Hybrid aspen plasmid librar... 42 0.024
gb|BU836421.1|BU836421 T086D04 Populus apical shoot cDNA li... 42 0.024
gb|BU863975.1|BU863975 S034G07 Populus imbibed seed cDNA li... 42 0.024
gb|BU897661.1|BU897661 X062A05 Populus wood cDNA library Po... 42 0.024
gb|CF231086.1|CF231086 PtaC0017B1B0103 Poplar cDNA library ... 42 0.024
gb|CF232053.1|CF232053 PtaJXO0005H8H0816 Poplar cDNA librar... 42 0.024
gb|CF232475.1|CF232475 PtaJXO0010H9A0402 Poplar cDNA librar... 42 0.024
gb|CX659297.1|CX659297 PO01028H11 Poplar SC cDNA library Po... 42 0.024
gb|AF053973.1| Populus tremula x Populus tremuloides UDP-gl... 42 0.024
gb|BU877340.1|BU877340 V032H05 Populus flower cDNA library ... 40 0.097
gb|BU896152.1|BU896152 X036D06 Populus wood cDNA library Po... 40 0.097
gb|CB239777.1|CB239777 RSH16E08 two-month-old roots from cl... 40 0.097
gb|CF119152.1|CF119152 MTU10CS.P14.B09 Aspen stem cDNA Libr... 40 0.097
gb|CF227854.1|CF227854 PtaXM0005E4E0410 Poplar cDNA library... 40 0.097
gb|CV271080.1|CV271080 WS0153.B21_L19 PTxN-IB-A-6 Populus t... 40 0.097
gb|CX657933.1|CX657933 PO01007B08 Poplar SC cDNA library Po... 40 0.097
gb|CX659483.1|CX659483 PO01031C01 Poplar SC cDNA library Po... 40 0.097
gb|CX659495.1|CX659495 PO01031D01 Poplar SC cDNA library Po... 40 0.097
gb|DN484251.1|DN484251 G071P31.3pR Populus tension wood cDN... 40 0.097
gb|DN484284.1|DN484284 G103P78.3pR Populus tension wood cDN... 40 0.097
gb|DT482226.1|DT482226 WS02519.B21_D24 PT-MB-N-A-15 Populus... 40 0.097
gb|CV264996.1|CV264996 WS02026.B21_A20 PTxN-IB-N-A-11 Popul... 38 0.38
>gb|BU877511.1|BU877511 V035D08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 400
Score = 61.9 bits (31), Expect = 3e-008
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 59 gaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagacc 118
||||| || ||||| |||||||| | |||||| |||| |||||||| || |||| |||
Sbjct: 302 gaggcaacaaagggagcccacggtatttgcatcttgacggagtgggatgaattcaggact 361
Query: 119 ctggactaccagaagatcttcgacaacatgcagaa 153
|| |||||| ||||||| || ||||||||||||||
Sbjct: 362 ctcgactacaagaagatatttgacaacatgcagaa 396
>gb|CV234476.1|CV234476 WS01215.B21.1_B04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01215_B04 3', mRNA sequence
Length = 865
Score = 61.9 bits (31), Expect = 3e-008
Identities = 79/95 (83%)
Strand = Plus / Minus
Query: 59 gaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagacc 118
||||| || ||||| |||||||| | |||||| |||| |||||||| || |||| |||
Sbjct: 514 gaggcaacaaagggagcccacggtatttgcatcttgacggagtgggatgaattcaggact 455
Query: 119 ctggactaccagaagatcttcgacaacatgcagaa 153
|| |||||| ||||||| || ||||||||||||||
Sbjct: 454 ctcgactacaagaagatatttgacaacatgcagaa 420
Score = 38.2 bits (19), Expect = 0.38
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||| ||| || ||||| || ||||| ||||| ||||| || || || ||||| ||||
Sbjct: 372 tgagggggattggattcattgtgtactcaatcggtaagccactggatgcatggctcaagg 313
Query: 261 acatgcc 267
|||||||
Sbjct: 312 acatgcc 306
>gb|CV271206.1|CV271206 WS0154.B21_B06 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0154_B06 3', mRNA sequence
Length = 708
Score = 61.9 bits (31), Expect = 3e-008
Identities = 79/95 (83%)
Strand = Plus / Minus
Query: 59 gaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagacc 118
||||| || ||||| |||||||| | |||||| |||| |||||||| || |||| |||
Sbjct: 644 gaggcaacaaagggagcccacggtatttgcatcttgacggagtgggatgaattcaggact 585
Query: 119 ctggactaccagaagatcttcgacaacatgcagaa 153
|| |||||| ||||||| || ||||||||||||||
Sbjct: 584 ctcgactacaagaagatatttgacaacatgcagaa 550
Score = 38.2 bits (19), Expect = 0.38
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||| ||| || ||||| || ||||| ||||| ||||| || || || ||||| ||||
Sbjct: 502 tgagggggattggattcattgtgtactcaatcggtaagccactggatgcatggctcaagg 443
Query: 261 acatgcc 267
|||||||
Sbjct: 442 acatgcc 436
>gb|DT491048.1|DT491048 WS02546.C21.1_K16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02546_K16 3', mRNA sequence
Length = 710
Score = 61.9 bits (31), Expect = 3e-008
Identities = 79/95 (83%)
Strand = Plus / Minus
Query: 59 gaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagacc 118
||||| || ||||| |||||||| | |||||| |||| |||||||| || |||| |||
Sbjct: 601 gaggcaacaaagggagcccacggtatttgcatcttgacggagtgggatgaattcaggact 542
Query: 119 ctggactaccagaagatcttcgacaacatgcagaa 153
|| |||||| ||||||| || ||||||||||||||
Sbjct: 541 ctcgactacaagaagatatttgacaacatgcagaa 507
Score = 38.2 bits (19), Expect = 0.38
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||| ||| || ||||| || ||||| ||||| ||||| || || || ||||| ||||
Sbjct: 459 tgagggggattggattcattgtgtactcaatcggtaagccactggatgcatggctcaagg 400
Query: 261 acatgcc 267
|||||||
Sbjct: 399 acatgcc 393
>gb|DT508597.1|DT508597 WS02421.BR_G17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02421_G17 5', mRNA sequence
Length = 865
Score = 61.9 bits (31), Expect = 3e-008
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 59 gaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagacc 118
||||| || ||||| |||||||| | |||||| |||| |||||||| || |||| |||
Sbjct: 384 gaggcaacaaagggagcccacggtatttgcatcttgacggagtgggatgaattcaggact 443
Query: 119 ctggactaccagaagatcttcgacaacatgcagaa 153
|| |||||| ||||||| || ||||||||||||||
Sbjct: 444 ctcgactacaagaagatatttgacaacatgcagaa 478
Score = 38.2 bits (19), Expect = 0.38
Identities = 55/67 (82%)
Strand = Plus / Plus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||| ||| || ||||| || ||||| ||||| ||||| || || || ||||| ||||
Sbjct: 526 tgagggggattggattcattgtgtactcaatcggtaagccactggatgcatggctcaagg 585
Query: 261 acatgcc 267
|||||||
Sbjct: 586 acatgcc 592
>gb|DT513205.1|DT513205 WS02421.B21_G17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02421_G17 3', mRNA sequence
Length = 865
Score = 61.9 bits (31), Expect = 3e-008
Identities = 79/95 (83%)
Strand = Plus / Minus
Query: 59 gaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagacc 118
||||| || ||||| |||||||| | |||||| |||| |||||||| || |||| |||
Sbjct: 482 gaggcaacaaagggagcccacggtatttgcatcttgacggagtgggatgaattcaggact 423
Query: 119 ctggactaccagaagatcttcgacaacatgcagaa 153
|| |||||| ||||||| || ||||||||||||||
Sbjct: 422 ctcgactacaagaagatatttgacaacatgcagaa 388
Score = 38.2 bits (19), Expect = 0.38
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||| ||| || ||||| || ||||| ||||| ||||| || || || ||||| ||||
Sbjct: 340 tgagggggattggattcattgtgtactcaatcggtaagccactggatgcatggctcaagg 281
Query: 261 acatgcc 267
|||||||
Sbjct: 280 acatgcc 274
>gb|CA932889.1|CA932889 MTU5CS.P18.G09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 607
Score = 60.0 bits (30), Expect = 1e-007
Identities = 102/126 (80%)
Strand = Plus / Minus
Query: 46 gtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtggga 105
|||||| || |||||||| || ||||| |||||||| | |||||| |||| ||||||||
Sbjct: 281 gtgggatgcctacgaggcaacaaagggagcccacggtatttgcatcttgacggagtggga 222
Query: 106 cgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgt 165
|| |||| ||| || || ||| ||| ||| || |||||||||||||| || ||||| ||
Sbjct: 221 tgaattcaggactctcgattacaagaggatatttgacaacatgcagaaaccagcctttgt 162
Query: 166 cttcga 171
|||||
Sbjct: 161 gttcga 156
>gb|CA932963.1|CA932963 MTU5CS.P1.G02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 60.0 bits (30), Expect = 1e-007
Identities = 102/126 (80%)
Strand = Plus / Minus
Query: 46 gtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtggga 105
|||||| || |||||||| || ||||| |||||||| | |||||| |||| ||||||||
Sbjct: 281 gtgggatgcctacgaggcaacaaagggagcccacggtatttgcatcttgacggagtggga 222
Query: 106 cgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgt 165
|| |||| ||| || || ||| ||| ||| || |||||||||||||| || ||||| ||
Sbjct: 221 tgaattcaggactctcgattacaagaggatatttgacaacatgcagaaaccagcctttgt 162
Query: 166 cttcga 171
|||||
Sbjct: 161 gttcga 156
>gb|CA933696.1|CA933696 MTU3TS.P11.B12 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 472
Score = 60.0 bits (30), Expect = 1e-007
Identities = 102/126 (80%)
Strand = Plus / Plus
Query: 46 gtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtggga 105
|||||| || |||||||| || ||||| |||||||| | |||||| |||| ||||||||
Sbjct: 190 gtgggatgcctacgaggcaacaaagggagcccacggtatttgcatcttgacggagtggga 249
Query: 106 cgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgt 165
|| |||| ||| || || ||| ||| ||| || |||||||||||||| || ||||| ||
Sbjct: 250 tgaattcaggactctcgattacaagaggatatttgacaacatgcagaaaccagcctttgt 309
Query: 166 cttcga 171
|||||
Sbjct: 310 gttcga 315
>gb|CF119975.1|CF119975 MTU10CS.P8.G01 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 593
Score = 60.0 bits (30), Expect = 1e-007
Identities = 102/126 (80%)
Strand = Plus / Minus
Query: 46 gtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtggga 105
|||||| || |||||||| || ||||| |||||||| | |||||| |||| ||||||||
Sbjct: 281 gtgggatgcctacgaggcaacaaagggagcccacggtatttgcatcttgacggagtggga 222
Query: 106 cgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgt 165
|| |||| ||| || || ||| ||| ||| || |||||||||||||| || ||||| ||
Sbjct: 221 tgaattcaggactctcgattacaagaggatatttgacaacatgcagaaaccagcctttgt 162
Query: 166 cttcga 171
|||||
Sbjct: 161 gttcga 156
>gb|CA933142.1|CA933142 MTU5CS.P4.A06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 607
Score = 58.0 bits (29), Expect = 4e-007
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
||||| || |||||||| || ||||| |||||||| | |||||| |||| ||||||||
Sbjct: 328 tgggatgcctacgaggcaacaaagggagcccacggtatttgcatcttgacggagtgggat 387
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|| |||| ||| || || ||| ||| ||| || |||||||||||||| || ||||| ||
Sbjct: 388 gaattcaggactctcgattacaagaggatatttgacaacatgcagaaaccagcctttgtg 447
Query: 167 ttcga 171
|||||
Sbjct: 448 ttcga 452
>gb|CA933190.1|CA933190 MTU5CS.P4.F06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 607
Score = 58.0 bits (29), Expect = 4e-007
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
||||| || |||||||| || ||||| |||||||| | |||||| |||| ||||||||
Sbjct: 328 tgggatgcctacgaggcaacaaagggagcccacggtatttgcatcttgacggagtgggat 387
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|| |||| ||| || || ||| ||| ||| || |||||||||||||| || ||||| ||
Sbjct: 388 gaattcaggactctcgattacaagaggatatttgacaacatgcagaaaccagcctttgtg 447
Query: 167 ttcga 171
|||||
Sbjct: 448 ttcga 452
>gb|CV232692.1|CV232692 WS0198.B21_F23 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0198_F23 3', mRNA sequence
Length = 564
Score = 56.0 bits (28), Expect = 2e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| |||| |||||||| || ||||||||||| || ||| ||||||| | ||||||
Sbjct: 527 tgcatcttgacagagtgggatgaattcaagacccttgattacaagaagatatatgacaac 468
Query: 146 atgcagaa 153
||||||||
Sbjct: 467 atgcagaa 460
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||||||| || ||||| || |||||||| || ||||| || || || ||||| ||||
Sbjct: 412 tgagggagattggtttcattgtgtactccattggtaagccactggatgcatggctcaagg 353
Query: 261 acatgcc 267
|||||||
Sbjct: 352 acatgcc 346
>gb|AI166760.1|AI166760 xylem.est.560 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 647
Score = 54.0 bits (27), Expect = 6e-006
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 59 gaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagacc 118
||||| || ||||| |||||||| | |||||| |||| |||||||| || |||| |||
Sbjct: 303 gaggcaacaaagggagcccacggtatttgcatcttgacggagtgggatgaattcaggact 362
Query: 119 ctggactaccagaagatcttcgacaacatgcagaa 153
|| || ||| ||||||| || ||||||||||||||
Sbjct: 363 ctcgattacaagaagatatttgacaacatgcagaa 397
Score = 38.2 bits (19), Expect = 0.38
Identities = 55/67 (82%)
Strand = Plus / Plus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||| ||| || ||||| || ||||| ||||| ||||| || || || ||||| ||||
Sbjct: 445 tgagggggattggattcattgtgtactcaatcggtaagccactggatgcatggctcaagg 504
Query: 261 acatgcc 267
|||||||
Sbjct: 505 acatgcc 511
>gb|CV273760.1|CV273760 WS01712.B21_B07 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS01712_B07 3', mRNA sequence
Length = 807
Score = 54.0 bits (27), Expect = 6e-006
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 59 gaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagacc 118
||||| || ||||| |||||||| | |||||| |||| |||||||| || |||| |||
Sbjct: 275 gaggcaacaaagggagcccacggtatttgcatcttgacggagtgggatgaattcaggact 334
Query: 119 ctggactaccagaagatcttcgacaacatgcagaa 153
|| || ||| ||||||| || ||||||||||||||
Sbjct: 335 ctcgattacaagaagatatttgacaacatgcagaa 369
>gb|CX657939.1|CX657939 PO01007C04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01007C04 5', mRNA sequence
Length = 620
Score = 54.0 bits (27), Expect = 6e-006
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
||||| || |||||||| || ||||| |||||||| | |||||| |||| ||||||||
Sbjct: 216 tgggatgcctacgaggcaacaaagggagcccacggtatttgcatcttgacggagtgggat 275
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaa 153
|| |||| ||| || || ||| ||| ||| || ||||||||||||||
Sbjct: 276 gaattcaggactctcgattacaagaggatatttgacaacatgcagaa 322
>gb|BP934051.1|BP934051 BP934051 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-059_N06.r 3', mRNA sequence
Length = 551
Score = 54.0 bits (27), Expect = 6e-006
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 59 gaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagacc 118
||||| || ||||| |||||||| | |||||| |||| |||||||| || |||| |||
Sbjct: 539 gaggcaacaaagggagcccacggtatttgcatcttgacggagtgggatgaattcaggact 480
Query: 119 ctggactaccagaagatcttcgacaacatgcagaa 153
|| || ||| ||||||| || ||||||||||||||
Sbjct: 479 ctcgattacaagaagatatttgacaacatgcagaa 445
>gb|CF231420.1|CF231420 PtaC0021C1C0105 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| |||| |||||||| || |||||||| || || ||||||||||| | ||||||
Sbjct: 575 tgcatcttgacagagtgggatgaattcaagactcttgattaccagaagatatatgacaac 634
Query: 146 atgca 150
|||||
Sbjct: 635 atgca 639
>gb|CA932913.1|CA932913 MTU5CS.P1.B02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 579
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| |||| |||||||| || |||||||| || || ||| ||||||| | ||||||
Sbjct: 137 tgcatcttgacagagtgggatgaattcaagactcttgattacaagaagatatatgacaac 78
Query: 146 atgcagaa 153
||||||||
Sbjct: 77 atgcagaa 70
>gb|CA934408.1|CA934408 MTU3TS.P7.C03 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 580
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| |||| |||||||| || |||||||| || || ||| ||||||| | ||||||
Sbjct: 137 tgcatcttgacagagtgggatgaattcaagactcttgattacaagaagatatatgacaac 78
Query: 146 atgcagaa 153
||||||||
Sbjct: 77 atgcagaa 70
>gb|CF118862.1|CF118862 MTU10CS.P10.D03 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 503
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| |||| |||||||| || |||||||| || || ||| ||||||| | ||||||
Sbjct: 137 tgcatcttgacagagtgggatgaattcaagactcttgattacaagaagatatatgacaac 78
Query: 146 atgcagaa 153
||||||||
Sbjct: 77 atgcagaa 70
>gb|AJ776963.1|AJ776963 AJ776963 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400021B01F1, mRNA sequence
Length = 516
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| |||| |||||||| || |||| ||| || || ||| ||||||| || ||||||
Sbjct: 6 tgcatcttgacggagtgggatgaattcaggactctcgattacaagaagatatttgacaac 65
Query: 146 atgcagaa 153
||||||||
Sbjct: 66 atgcagaa 73
>gb|CV227643.1|CV227643 WS0167.B21_M15 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_M15
3', mRNA sequence
Length = 713
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
|||||||| |||||||| | ||||||||||| |||||||||||
Sbjct: 386 tactccattggcaagccattggacgcctggctgaaggacatgcc 429
Score = 42.1 bits (21), Expect = 0.024
Identities = 78/97 (80%)
Strand = Plus / Plus
Query: 41 tgcgtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgag 100
|||||| |||| || || ||||| || ||||| || |||||| | ||| | || || |||
Sbjct: 203 tgcgtgcgggatgcttatgaggcgacaaagggtgctcacgggatctgcgttctaactgag 262
Query: 101 tgggacgagttcaagaccctggactaccagaagatct 137
||||| |||||||| || || || |||||||||||||
Sbjct: 263 tgggatgagttcaaaactcttgattaccagaagatct 299
>gb|CV231395.1|CV231395 WS0194.B21_G18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0194_G18 3', mRNA sequence
Length = 422
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| |||| |||||||| || |||||||| || || ||| ||||||| | ||||||
Sbjct: 418 tgcatcttgacagagtgggatgaattcaagactcttgattacaagaagatatatgacaac 359
Query: 146 atgcagaa 153
||||||||
Sbjct: 358 atgcagaa 351
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||||||| || ||||| || |||||||| || ||||| || || || ||||| ||||
Sbjct: 303 tgagggagattggtttcattgtgtactccattggtaagccactggatgcatggctcaagg 244
Query: 261 acatgcc 267
|||||||
Sbjct: 243 acatgcc 237
>gb|CV234536.1|CV234536 WS01215.B21.1_E02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01215_E02 3', mRNA sequence
Length = 857
Score = 48.1 bits (24), Expect = 4e-004
Identities = 93/116 (80%)
Strand = Plus / Minus
Query: 41 tgcgtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgag 100
|||||| |||| || || ||||| || ||||| || |||||| | ||| | || || |||
Sbjct: 343 tgcgtgcgggatgcttatgaggcgacaaagggtgctcacgggatctgcgttctaactgag 284
Query: 101 tgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcc 156
||||| |||||||| || || || ||||||||||||| || |||||||||||||
Sbjct: 283 tgggatgagttcaaaactcttgattaccagaagatctataacgacatgcagaagcc 228
Score = 40.1 bits (20), Expect = 0.097
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
|||||||| |||||||| | || |||||||| |||||||||||
Sbjct: 160 tactccattggcaagccattggatgcctggctgaaggacatgcc 117
>gb|CV243357.1|CV243357 WS02518.B21_K07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02518_K07 3', mRNA sequence
Length = 924
Score = 48.1 bits (24), Expect = 4e-004
Identities = 93/116 (80%)
Strand = Plus / Minus
Query: 41 tgcgtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgag 100
|||||| |||| || || ||||| || ||||| || |||||| | ||| | || || |||
Sbjct: 510 tgcgtgcgggatgcttatgaggcgacaaagggtgctcacgggatctgcgttctaactgag 451
Query: 101 tgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcc 156
||||| |||||||| || || || ||||||||||||| || |||||||||||||
Sbjct: 450 tgggatgagttcaaaactcttgattaccagaagatctataacgacatgcagaagcc 395
>gb|CV245420.1|CV245420 WS0257.B21_F22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0257_F22 3', mRNA sequence
Length = 794
Score = 48.1 bits (24), Expect = 4e-004
Identities = 93/116 (80%)
Strand = Plus / Minus
Query: 41 tgcgtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgag 100
|||||| |||| || || ||||| || ||||| || |||||| | ||| | || || |||
Sbjct: 391 tgcgtgcgggatgcttatgaggcgacaaagggtgctcacgggatctgcgttctaactgag 332
Query: 101 tgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcc 156
||||| |||||||| || || || ||||||||||||| || |||||||||||||
Sbjct: 331 tgggatgagttcaaaactcttgattaccagaagatctataacgacatgcagaagcc 276
Score = 40.1 bits (20), Expect = 0.097
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
|||||||| |||||||| | || |||||||| |||||||||||
Sbjct: 208 tactccattggcaagccattggatgcctggctgaaggacatgcc 165
>gb|CV268719.1|CV268719 WS0206.B21_E05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0206_E05 3', mRNA sequence
Length = 720
Score = 48.1 bits (24), Expect = 4e-004
Identities = 93/116 (80%)
Strand = Plus / Minus
Query: 41 tgcgtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgag 100
|||||| |||| || || ||||| || ||||| || |||||| | ||| | || || |||
Sbjct: 524 tgcgtgcgggatgcttatgaggcgacaaagggtgctcacgggatctgcgttctaactgag 465
Query: 101 tgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcc 156
||||| |||||||| || || || ||||||||||||| || |||||||||||||
Sbjct: 464 tgggatgagttcaaaactcttgattaccagaagatctataacgacatgcagaagcc 409
Score = 40.1 bits (20), Expect = 0.097
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
|||||||| |||||||| | || |||||||| |||||||||||
Sbjct: 341 tactccattggcaagccattggatgcctggctgaaggacatgcc 298
>gb|CV274430.1|CV274430 WS0173.B21_E02 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0173_E02 3', mRNA sequence
Length = 731
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| |||| |||||||| || |||||||| || || ||| ||||||| | ||||||
Sbjct: 488 tgcatcttgacagagtgggatgaattcaagactctcgattacaagaagatatatgacaac 429
Query: 146 atgcagaa 153
||||||||
Sbjct: 428 atgcagaa 421
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||||||| || ||||| || |||||||| || ||||| || || || ||||| ||||
Sbjct: 373 tgagggagattggtttcattgtgtactccattggtaagccactggatgcatggctcaagg 314
Query: 261 acatgcc 267
|||||||
Sbjct: 313 acatgcc 307
>gb|CV283637.1|CV283637 WS0187.B21_O02 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0187_O02 3', mRNA sequence
Length = 857
Score = 48.1 bits (24), Expect = 4e-004
Identities = 93/116 (80%)
Strand = Plus / Minus
Query: 41 tgcgtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgag 100
|||||| |||| || || ||||| || ||||| || |||||| | ||| | || || |||
Sbjct: 500 tgcgtgcgggatgcttatgaggcgacaaagggtgctcacgggatctgcgttctaactgag 441
Query: 101 tgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcc 156
||||| |||||||| || || || ||||||||||||| || |||||||||||||
Sbjct: 440 tgggatgagttcaaaactcttgattaccagaagatctataacgacatgcagaagcc 385
Score = 40.1 bits (20), Expect = 0.097
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 224 tactccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
|||||||| |||||||| | || |||||||| |||||||||||
Sbjct: 317 tactccattggcaagccattggatgcctggctgaaggacatgcc 274
>gb|BP935337.1|BP935337 BP935337 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-076_D16.r 3', mRNA sequence
Length = 536
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| |||| |||||||| || |||||||| || || ||| ||||||| | ||||||
Sbjct: 452 tgcatcttgacagagtgggatgaattcaagactcttgattacaagaagatatatgacaac 393
Query: 146 atgcagaa 153
||||||||
Sbjct: 392 atgcagaa 385
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||||||| || ||||| || |||||||| || ||||| || || || ||||| ||||
Sbjct: 337 tgagggagattggtttcattgtgtactccattggtaagccactggatgcatggctcaagg 278
Query: 261 acatgcc 267
|||||||
Sbjct: 277 acatgcc 271
>gb|BP936999.1|BP936999 BP936999 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-099_G18.r 3', mRNA sequence
Length = 593
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| |||| |||||||| || |||||||| || || ||| ||||||| | ||||||
Sbjct: 453 tgcatcttgacagagtgggatgaattcaagactcttgattacaagaagatatatgacaac 394
Query: 146 atgcagaa 153
||||||||
Sbjct: 393 atgcagaa 386
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||||||| || ||||| || |||||||| || ||||| || || || ||||| ||||
Sbjct: 338 tgagggagattggtttcattgtgtactccattggtaagccactggatgcatggctcaagg 279
Query: 261 acatgcc 267
|||||||
Sbjct: 278 acatgcc 272
>gb|DT521317.1|DT521317 WS02033.B21_P13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02033_P13 3', mRNA sequence
Length = 898
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| |||| |||||||| || |||||||| || || ||| ||||||| | ||||||
Sbjct: 505 tgcatcttgacagagtgggatgaattcaagactcttgattacaagaagatatatgacaac 446
Query: 146 atgcagaa 153
||||||||
Sbjct: 445 atgcagaa 438
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||||||| || ||||| || |||||||| || ||||| || || || ||||| ||||
Sbjct: 390 tgagggagattggtttcattgtgtactccattggtaagccactggatgcatggctcaagg 331
Query: 261 acatgcc 267
|||||||
Sbjct: 330 acatgcc 324
>gb|AY466400.1| Populus tomentosa UDP-glucose dehydrogenase (ugdh) mRNA, complete cds
Length = 1819
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| |||| |||||||| || |||||||| || || ||| ||||||| | ||||||
Sbjct: 1329 tgcatcttgacagagtgggatgaattcaagactcttgattacaagaagatatatgacaac 1388
Query: 146 atgcagaa 153
||||||||
Sbjct: 1389 atgcagaa 1396
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||||||| || ||||| || |||||||| || ||||| || || || ||||| ||||
Sbjct: 1444 tgagggagattggtttcattgtgtactccattggtaagccactggatgcatggctcaagg 1503
Query: 261 acatgcc 267
|||||||
Sbjct: 1504 acatgcc 1510
>gb|BI128491.1|BI128491 G076P86Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 457
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 95 accgagtgggacgagttcaagaccctggactaccagaagatct 137
||||||||||| |||||||| || || || |||||||||||||
Sbjct: 2 accgagtgggatgagttcaaaactcttgattaccagaagatct 44
>gb|BI130408.1|BI130408 G105P23Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 493
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 95 accgagtgggacgagttcaagaccctggactaccagaagatct 137
||||||||||| |||||||| || || || |||||||||||||
Sbjct: 117 accgagtgggatgagttcaaaactcttgattaccagaagatct 159
>gb|BI130554.1|BI130554 G107P25Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 505
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 59 gaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagacc 118
||||| || ||||| |||||||| | |||||| |||| |||||||| || |||| |||
Sbjct: 352 gaggcaacaaagggagcccacggtatttgcatcttgacggagtgggatgaattcaggact 411
Query: 119 ctggactaccagaagatcttcgacaacatgcagaa 153
|| || ||| ||| ||| || ||||||||||||||
Sbjct: 412 ctcgattacaagaggatatttgacaacatgcagaa 446
>gb|BU816357.1|BU816357 N063F12 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 595
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 59 gaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagacc 118
||||| || ||||| |||||||| | |||||| |||| |||||||| || |||| |||
Sbjct: 103 gaggcaacaaagggagcccacggtatttgcatcttgacggagtgggatgaattcaggact 162
Query: 119 ctggactaccagaagatcttcgacaacatgcagaa 153
|| || ||| ||| ||| || ||||||||||||||
Sbjct: 163 ctcgattacaagaggatatttgacaacatgcagaa 197
>gb|BU889579.1|BU889579 P022G08 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 598
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||||||| || ||||| || |||||||| || ||||| || || || ||||| ||||
Sbjct: 238 tgagggagattggtttcattgtgtactccattggtaagccactggatgcatggctcaagg 297
Query: 261 acatgcc 267
|||||||
Sbjct: 298 acatgcc 304
Score = 40.1 bits (20), Expect = 0.097
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| |||| |||||||| || |||||||| || || ||| | ||||| | ||||||
Sbjct: 123 tgcatcttgacagagtgggatgaattcaagactcttgattacaacaagatatatgacaac 182
Query: 146 atgcagaa 153
||||||||
Sbjct: 183 atgcagaa 190
>gb|BU893049.1|BU893049 P072F05 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 584
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 95 accgagtgggacgagttcaagaccctggactaccagaagatct 137
||||||||||| |||||||| || || || |||||||||||||
Sbjct: 152 accgagtgggatgagttcaaaactcttgattaccagaagatct 194
>gb|CF229213.1|CF229213 PtaXM0022F3F0311 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 701
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 59 gaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagacc 118
||||| || ||||| |||||||| | |||||| |||| |||||||| || |||| |||
Sbjct: 163 gaggcaacaaagggagcccacggtatttgcatcttgacggagtgggatgaattcaggact 222
Query: 119 ctggactaccagaagatcttcgacaacatgcagaa 153
|| || ||| ||| ||| || ||||||||||||||
Sbjct: 223 ctcgattacaagaggatatttgacaacatgcagaa 257
>gb|CF231992.1|CF231992 PtaJXO0005C11C1105 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 517
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||||||| || ||||| || |||||||| || ||||| || || || ||||| ||||
Sbjct: 168 tgagggagattggtttcattgtgtactccattggtaagccactggatgcatggctcaagg 227
Query: 261 acatgcc 267
|||||||
Sbjct: 228 acatgcc 234
Score = 40.1 bits (20), Expect = 0.097
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| |||| |||||||| || |||||||| || || ||| | ||||| | ||||||
Sbjct: 53 tgcatcttgacagagtgggatgaattcaagactcttgattacaacaagatatatgacaac 112
Query: 146 atgcagaa 153
||||||||
Sbjct: 113 atgcagaa 120
>gb|CF233354.1|CF233354 PtaJXO0022C6C0606 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 488
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||||||| || ||||| || |||||||| || ||||| || || || ||||| ||||
Sbjct: 68 tgagggagattggtttcattgtgtactccattggtaagccactggatgcatggctcaagg 127
Query: 261 acatgcc 267
|||||||
Sbjct: 128 acatgcc 134
>gb|CF233598.1|CF233598 PtaJXO0025E12E1210 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 575
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||||||| || ||||| || |||||||| || ||||| || || || ||||| ||||
Sbjct: 200 tgagggagattggtttcattgtgtactccattggtaagccactggatgcatggctcaagg 259
Query: 261 acatgcc 267
|||||||
Sbjct: 260 acatgcc 266
Score = 40.1 bits (20), Expect = 0.097
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| |||| |||||||| || |||||||| || || ||| | ||||| | ||||||
Sbjct: 85 tgcatcttgacagagtgggatgaattcaagactcttgattacaacaagatatatgacaac 144
Query: 146 atgcagaa 153
||||||||
Sbjct: 145 atgcagaa 152
>gb|CF234142.1|CF234142 PtaJXO3A3A0301 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 567
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 59 gaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagacc 118
||||| || ||||| |||||||| | |||||| |||| |||||||| || |||| |||
Sbjct: 201 gaggcaacaaagggagcccacggtatttgcatcttgacggagtgggatgaattcaggact 260
Query: 119 ctggactaccagaagatcttcgacaacatgcagaa 153
|| || ||| ||| ||| || ||||||||||||||
Sbjct: 261 ctcgattacaagaggatatttgacaacatgcagaa 295
>gb|CF234144.1|CF234144 PtaJXO3A5A0501 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 476
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 95 accgagtgggacgagttcaagaccctggactaccagaagatct 137
||||||||||| |||||||| || || || |||||||||||||
Sbjct: 19 accgagtgggatgagttcaaaactcttgattaccagaagatct 61
>gb|CF235453.1|CF235453 PtaJXT0023A12A1202 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 508
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 95 accgagtgggacgagttcaagaccctggactaccagaagatct 137
||||||||||| |||||||| || || || |||||||||||||
Sbjct: 51 accgagtgggatgagttcaaaactcttgattaccagaagatct 93
>gb|CF237119.1|CF237119 Ptajxtjxt2C3C0305 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 272
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||||||| || ||||| || |||||||| || ||||| || || || ||||| ||||
Sbjct: 96 tgagggagattggtttcattgtgtactccattggtaagccactggatgcatggctcaagg 155
Query: 261 acatgcc 267
|||||||
Sbjct: 156 acatgcc 162
>gb|CF237298.1|CF237298 Ptajxtjxt4D5D0507 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 528
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 201 tgagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaagg 260
|||||||||| || ||||| || |||||||| || ||||| || || || ||||| ||||
Sbjct: 188 tgagggagattggtttcattgtgtactccattggtaagccactggatgcatggctcaagg 247
Query: 261 acatgcc 267
|||||||
Sbjct: 248 acatgcc 254
Score = 40.1 bits (20), Expect = 0.097
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| |||| |||||||| || |||||||| || || ||| | ||||| | ||||||
Sbjct: 73 tgcatcttgacagagtgggatgaattcaagactcttgattacaacaagatatatgacaac 132
Query: 146 atgcagaa 153
||||||||
Sbjct: 133 atgcagaa 140
>gb|CK093704.1|CK093704 G130P23.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G130P23 3', mRNA sequence
Length = 817
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 95 accgagtgggacgagttcaagaccctggactaccagaagatct 137
||||||||||| |||||||| || || || |||||||||||||
Sbjct: 459 accgagtgggatgagttcaaaactcttgattaccagaagatct 417
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,298
Number of Sequences: 369679
Number of extensions: 50298
Number of successful extensions: 14213
Number of sequences better than 0.5: 77
Number of HSP's better than 0.5 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14050
Number of HSP's gapped (non-prelim): 163
length of query: 616
length of database: 203,408,664
effective HSP length: 19
effective length of query: 597
effective length of database: 196,384,763
effective search space: 117241703511
effective search space used: 117241703511
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)