BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404863.2.1
(672 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU834125.1|BU834125 T057B09 Populus apical shoot cDNA li... 111 3e-023
gb|CK103295.1|CK103295 G111P56.5pR Populus tension wood cDN... 111 3e-023
gb|BU815980.1|BU815980 N058E11 Populus bark cDNA library Po... 94 8e-018
gb|BU893572.1|BU893572 P079E11 Populus petioles cDNA librar... 94 8e-018
gb|CF233991.1|CF233991 PtaJXO1B11B1103 Poplar cDNA library ... 94 8e-018
gb|CK115917.1|CK115917 Y017C02 Populus infected leaf substr... 94 8e-018
gb|DN494269.1|DN494269 K019P78.5pR Populus apical shoot cDN... 94 8e-018
gb|BU896882.1|BU896882 X047C09 Populus wood cDNA library Po... 90 1e-016
gb|CF119018.1|CF119018 MTU10CS.P12.D11 Aspen stem cDNA Libr... 88 5e-016
gb|CF119541.1|CF119541 MTU10CS.P3.B11 Aspen stem cDNA Libra... 88 5e-016
gb|CF119878.1|CF119878 MTU10CS.P7.D09 Aspen stem cDNA Libra... 88 5e-016
gb|CK093203.1|CK093203 G111P56.3pR Populus tension wood cDN... 88 5e-016
gb|AI162882.1|AI162882 A026P17U Hybrid aspen plasmid librar... 86 2e-015
gb|CN520831.1|CN520831 GQ0108.B3_C09 GQ010 Populus trichoca... 86 2e-015
gb|CK319456.1|CK319456 X9P11a03 Populus stem seasonal libra... 86 2e-015
gb|AJ767248.1|AJ767248 AJ767248 Populus euphratica leaf adu... 86 2e-015
gb|CV243493.1|CV243493 WS0252.B21_A11 PT-MB-N-A-15 Populus ... 86 2e-015
gb|CV261044.1|CV261044 WS02015.B21_L08 PTxN-IB-N-A-11 Popul... 86 2e-015
gb|CV268494.1|CV268494 WS0205.B21_K08 PTxN-IB-N-A-11 Populu... 86 2e-015
gb|CV272637.1|CV272637 WS0158.B21_D22 PTxN-IB-A-6 Populus t... 86 2e-015
gb|DT522999.1|DT522999 WS02038.B21_I04 PTxN-IB-N-A-11 Popul... 86 2e-015
gb|CN523749.1|CN523749 GQ015M11.T3_F10 GQ015 Populus tricho... 82 3e-014
gb|CK317839.1|CK317839 B9P02d09 Populus stem seasonal libra... 80 1e-013
gb|AI167104.1|AI167104 xylem.est.870 Poplar xylem Lambda ZA... 78 5e-013
gb|CA925749.1|CA925749 MTU7TL.P5.D09 Aspen leaf cDNA Librar... 78 5e-013
gb|CV255021.1|CV255021 WS02411.B21_N12 PTxD-ICC-N-A-14 Popu... 78 5e-013
gb|BP933667.1|BP933667 BP933667 full-length enriched poplar... 78 5e-013
gb|DN484786.1|DN484786 K019P78.3pR Populus apical shoot cDN... 72 3e-011
gb|BI130843.1|BI130843 G111P56Y Populus cambium cDNA librar... 70 1e-010
gb|BU898025.1|BU898025 X073E11 Populus wood cDNA library Po... 70 1e-010
gb|CK089268.1|CK089268 B007P10.3pR Hybrid aspen plasmid lib... 70 1e-010
gb|CK317884.1|CK317884 B9P02h09 Populus stem seasonal libra... 62 3e-008
gb|DT469942.1|DT469942 WS01919.C21_G06 PT-DX-N-A-10 Populus... 62 3e-008
gb|AI165115.1|AI165115 A075p46u Hybrid aspen plasmid librar... 58 5e-007
gb|BU816810.1|BU816810 N071F02 Populus bark cDNA library Po... 58 5e-007
gb|CF227459.1|CF227459 PtaD6C1C0105 Poplar cDNA library fro... 58 5e-007
gb|CV244974.1|CV244974 WS0256.B21_C10 PT-MB-N-A-15 Populus ... 58 5e-007
gb|CF228195.1|CF228195 PtaXM0010A9A0901 Poplar cDNA library... 50 1e-004
gb|CK319636.1|CK319636 B9SP06d09 Populus stem seasonal libr... 50 1e-004
gb|BU889976.1|BU889976 P029A06 Populus petioles cDNA librar... 48 4e-004
gb|AJ767775.1|AJ767775 AJ767775 Populus euphratica leaf adu... 48 4e-004
gb|BI069273.1|BI069273 C034P61U Populus strain T89 leaves P... 46 0.002
gb|BP931581.1|BP931581 BP931581 full-length enriched poplar... 46 0.002
gb|CN521463.1|CN521463 GQ0111.B3_E11 GQ011 Populus trichoca... 42 0.027
gb|AJ776489.1|AJ776489 AJ776489 Populus euphratica root 3-6... 42 0.027
gb|CK098703.1|CK098703 A026P17.5pR Hybrid aspen plasmid lib... 40 0.11
gb|CV232483.1|CV232483 WS0197.B21_L17 PT-DX-N-A-10 Populus ... 38 0.42
>gb|BU834125.1|BU834125 T057B09 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 758
Score = 111 bits (56), Expect = 3e-023
Identities = 188/232 (81%)
Strand = Plus / Plus
Query: 31 aggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcg 90
|||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 326 aggctttcccgctgcactgtgatgcggggagtgcgtatcaagaagcatgcatgcatctct 385
Query: 91 aacagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacc 150
| || || || || ||||| || ||||| || |||||| || |||||||| |||||
Sbjct: 386 agtagtatcattggatggcattccactgtggggagatgggctcgcatagagaacatgaca 445
Query: 151 atcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggcggtgttgttctc 210
||| | || || |||||||||| || || || || ||||| ||||| |||||||| ||
Sbjct: 446 atcttaggagaagatgttcatgttggcgatgaagtttacagtaatgggggtgttgtcctg 505
Query: 211 ccacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatgtgag 262
|| || || || || ||||| |||||||||||||| || || ||||||||||
Sbjct: 506 cctcacaaggaaataaagtctagcattttgaagccagaaattgtcatgtgag 557
>gb|CK103295.1|CK103295 G111P56.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G111P56 5', mRNA sequence
Length = 548
Score = 111 bits (56), Expect = 3e-023
Identities = 188/232 (81%)
Strand = Plus / Plus
Query: 31 aggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcg 90
|||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 231 aggctttcccgctgcactgtgatgcggggagtgcgtatcaagaagcatgcatgcatctct 290
Query: 91 aacagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacc 150
| || || || || ||||| || ||||| || |||||| || |||||||| |||||
Sbjct: 291 agtagtatcattggatggcattccactgtggggagatgggctcgcatagagaacatgaca 350
Query: 151 atcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggcggtgttgttctc 210
||| | || || |||||||||| || || || || ||||| ||||| |||||||| ||
Sbjct: 351 atcttaggagaagatgttcatgttggcgatgaagtttacagtaatgggggtgttgtcctg 410
Query: 211 ccacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatgtgag 262
|| || || || || ||||| |||||||||||||| || || ||||||||||
Sbjct: 411 cctcacaaggaaataaagtctagcattttgaagccagaaattgtcatgtgag 462
>gb|BU815980.1|BU815980 N058E11 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 547
Score = 93.7 bits (47), Expect = 8e-018
Identities = 173/215 (80%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 41 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 100
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 101 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 160
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
|||||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 161 ttcatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 220
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 221 aatcaagcattttgaagccagagatagttatgtga 255
>gb|BU893572.1|BU893572 P079E11 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 582
Score = 93.7 bits (47), Expect = 8e-018
Identities = 173/215 (80%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 105 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 164
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 165 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 224
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
|||||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 225 ttcatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 284
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 285 aatcaagcattttgaagccagagatagttatgtga 319
>gb|CF233991.1|CF233991 PtaJXO1B11B1103 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 633
Score = 93.7 bits (47), Expect = 8e-018
Identities = 173/215 (80%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 115 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 174
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 175 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 234
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
| |||| ||||||| | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 235 tccatgtttgtgacgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 294
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 295 aatcaagcattttgaagccagagatagttatgtga 329
>gb|CK115917.1|CK115917 Y017C02 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y017C02 5', mRNA sequence
Length = 531
Score = 93.7 bits (47), Expect = 8e-018
Identities = 173/215 (80%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 45 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 104
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 105 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 164
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
|||||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 165 ttcatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 224
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 225 aatcaagcattttgaagccagagatagttatgtga 259
>gb|DN494269.1|DN494269 K019P78.5pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone K019P78 5', mRNA sequence
Length = 588
Score = 93.7 bits (47), Expect = 8e-018
Identities = 173/215 (80%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 304 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 363
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 364 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 423
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
|||||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 424 ttcatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 483
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 484 aatcaagcattttgaagccagagatagttatgtga 518
>gb|BU896882.1|BU896882 X047C09 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 580
Score = 89.7 bits (45), Expect = 1e-016
Identities = 165/205 (80%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 248 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 307
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 308 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 367
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
|||||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 368 ttcatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 427
Query: 227 agtcaagcattttgaagcctgagat 251
| ||||||||||||||||| |||||
Sbjct: 428 aatcaagcattttgaagccagagat 452
>gb|CF119018.1|CF119018 MTU10CS.P12.D11 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 787
Score = 87.7 bits (44), Expect = 5e-016
Identities = 158/196 (80%)
Strand = Plus / Minus
Query: 67 atcaagaagcatgcctgcatctcgaacagcattatcgggtggcactcaactgttggacaa 126
||||||||||| || ||||| || | ||| || |||||||||||||| ||||| || |
Sbjct: 500 atcaagaagcacgcttgcatatctagcagtatcatcgggtggcactccactgtcgggaga 441
Query: 127 tgggcacggatagagaatatgaccatcctgggcgaggatgttcatgggggtgacgaggta 186
||||| || ||||||| ||||| ||||| || || ||||| || | | ||||||| |
Sbjct: 440 tgggcccgtgtagagaacatgacaatccttggagaagatgtccaagtgtgtgacgaaatt 381
Query: 187 tacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttgaagcct 246
||||||||||| ||||| ||| | || || ||||||||||| || ||||||||||||||
Sbjct: 380 tacagcaatggaggtgtggttttaccccacaaagagatcaaatcgagcattttgaagcca 321
Query: 247 gagatcgtcatgtgag 262
||||| || |||||||
Sbjct: 320 gagattgtaatgtgag 305
>gb|CF119541.1|CF119541 MTU10CS.P3.B11 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 590
Score = 87.7 bits (44), Expect = 5e-016
Identities = 158/196 (80%)
Strand = Plus / Minus
Query: 67 atcaagaagcatgcctgcatctcgaacagcattatcgggtggcactcaactgttggacaa 126
||||||||||| || ||||| || | ||| || |||||||||||||| ||||| || |
Sbjct: 500 atcaagaagcacgcttgcatatctagcagtatcatcgggtggcactccactgtcgggaga 441
Query: 127 tgggcacggatagagaatatgaccatcctgggcgaggatgttcatgggggtgacgaggta 186
||||| || ||||||| ||||| ||||| || || ||||| || | | ||||||| |
Sbjct: 440 tgggcccgtgtagagaacatgacaatccttggagaagatgtccaagtgtgtgacgaaatt 381
Query: 187 tacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttgaagcct 246
||||||||||| ||||| ||| | || || ||||||||||| || ||||||||||||||
Sbjct: 380 tacagcaatggaggtgtggttttaccccacaaagagatcaaatcgagcattttgaagcca 321
Query: 247 gagatcgtcatgtgag 262
||||| || |||||||
Sbjct: 320 gagattgtaatgtgag 305
>gb|CF119878.1|CF119878 MTU10CS.P7.D09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 599
Score = 87.7 bits (44), Expect = 5e-016
Identities = 158/196 (80%)
Strand = Plus / Minus
Query: 67 atcaagaagcatgcctgcatctcgaacagcattatcgggtggcactcaactgttggacaa 126
||||||||||| || ||||| || | ||| || |||||||||||||| ||||| || |
Sbjct: 500 atcaagaagcacgcttgcatatctagcagtatcatcgggtggcactccactgtcgggaga 441
Query: 127 tgggcacggatagagaatatgaccatcctgggcgaggatgttcatgggggtgacgaggta 186
||||| || ||||||| ||||| ||||| || || ||||| || | | ||||||| |
Sbjct: 440 tgggcccgtgtagagaacatgacaatccttggagaagatgtccaagtgtgtgacgaaatt 381
Query: 187 tacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttgaagcct 246
||||||||||| ||||| ||| | || || ||||||||||| || ||||||||||||||
Sbjct: 380 tacagcaatggaggtgtggttttaccccacaaagagatcaaatcgagcattttgaagcca 321
Query: 247 gagatcgtcatgtgag 262
||||| || |||||||
Sbjct: 320 gagattgtaatgtgag 305
>gb|CK093203.1|CK093203 G111P56.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G111P56 3', mRNA sequence
Length = 716
Score = 87.7 bits (44), Expect = 5e-016
Identities = 185/232 (79%)
Strand = Plus / Minus
Query: 31 aggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcg 90
|||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||
Sbjct: 388 aggctttcccgctgcactgtgatgcggggagtgcgtatcaagaagcatgcatgcatcttt 329
Query: 91 aacagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacc 150
| || || || || ||||| || ||||| || |||||| || |||||||| ||| |
Sbjct: 328 agtagtatcattggatggcattccactgtggggagatgggctcgcatagagaacatgcca 269
Query: 151 atcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggcggtgttgttctc 210
||| | || || |||||||||| || || || || ||||| ||||| |||||||| ||
Sbjct: 268 atcttaggagaagatgttcatgttggcgatgaagtttacagtaatgggggtgttgtcctg 209
Query: 211 ccacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatgtgag 262
|| || || || || |||| |||||||||||||| || || ||||||||||
Sbjct: 208 cctcacaaggaaataaagtttagcattttgaagccagaaattgtcatgtgag 157
>gb|AI162882.1|AI162882 A026P17U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 440
Score = 85.7 bits (43), Expect = 2e-015
Identities = 173/215 (80%), Gaps = 1/215 (0%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 148 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 207
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 208 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 267
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
|||||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 268 ttcatgtttgtgatgaaat-tacagcaacggaggtgtggttttaccccacaaagagatca 326
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 327 aatcaagcattttgaagccagagatagttatgtga 361
>gb|CN520831.1|CN520831 GQ0108.B3_C09 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_C09 5', mRNA sequence
Length = 810
Score = 85.7 bits (43), Expect = 2e-015
Identities = 172/215 (80%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 365 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 424
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 425 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 484
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
| |||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 485 tccatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 544
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 545 aatcaagcattttgaagccagagattgttatgtga 579
>gb|CK319456.1|CK319456 X9P11a03 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 343
Score = 85.7 bits (43), Expect = 2e-015
Identities = 172/215 (80%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 120 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 179
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 180 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 239
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
| |||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 240 tccatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 299
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 300 aatcaagcattttgaagccagagatagttatgtga 334
>gb|AJ767248.1|AJ767248 AJ767248 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100003F02F1, mRNA sequence
Length = 685
Score = 85.7 bits (43), Expect = 2e-015
Identities = 172/215 (80%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||||||||| || | ||| || || || |
Sbjct: 237 ctgtgatgcgtggagttcgcatcaagaagcatgcctgcatatctagcagtatcattggat 296
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 297 ggcactccacagttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 356
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
| |||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 357 tgcatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 416
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 417 aatcaagcattttgaagccagagatagttatgtga 451
>gb|CV243493.1|CV243493 WS0252.B21_A11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0252_A11 3', mRNA sequence
Length = 837
Score = 85.7 bits (43), Expect = 2e-015
Identities = 172/215 (80%)
Strand = Plus / Minus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 481 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 422
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 421 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 362
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
| |||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 361 tccatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 302
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 301 aatcaagcattttgaagccagagatagttatgtga 267
>gb|CV261044.1|CV261044 WS02015.B21_L08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02015_L08 3', mRNA sequence
Length = 891
Score = 85.7 bits (43), Expect = 2e-015
Identities = 172/215 (80%)
Strand = Plus / Minus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 482 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 423
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 422 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 363
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
| |||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 362 tccatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 303
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 302 aatcaagcattttgaagccagagatagttatgtga 268
>gb|CV268494.1|CV268494 WS0205.B21_K08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0205_K08 3', mRNA sequence
Length = 697
Score = 85.7 bits (43), Expect = 2e-015
Identities = 172/215 (80%)
Strand = Plus / Minus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 472 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 413
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 412 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 353
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
| |||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 352 tccatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 293
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 292 aatcaagcattttgaagccagagatagttatgtga 258
>gb|CV272637.1|CV272637 WS0158.B21_D22 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0158_D22 3', mRNA sequence
Length = 763
Score = 85.7 bits (43), Expect = 2e-015
Identities = 172/215 (80%)
Strand = Plus / Minus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 329 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 270
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 269 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 210
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
| |||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 209 tccatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 150
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 149 aatcaagcattttgaagccagagatagttatgtga 115
>gb|DT522999.1|DT522999 WS02038.B21_I04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02038_I04 3', mRNA sequence
Length = 843
Score = 85.7 bits (43), Expect = 2e-015
Identities = 172/215 (80%)
Strand = Plus / Minus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 482 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 423
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 422 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 363
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
| |||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 362 tccatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 303
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 302 aatcaagcattttgaagccagagatagttatgtga 268
>gb|CN523749.1|CN523749 GQ015M11.T3_F10 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M11_F10 5', mRNA sequence
Length = 738
Score = 81.8 bits (41), Expect = 3e-014
Identities = 171/215 (79%)
Strand = Plus / Minus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || | |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 501 ctgtgatgcgtggagtnngcatcaagaagcatgcttgcatatctagcagtatcatcggat 442
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 441 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 382
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
| |||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 381 tccatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 322
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 321 aatcaagcattttgaagccagagattgttatgtga 287
>gb|CK317839.1|CK317839 B9P02d09 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 642
Score = 79.8 bits (40), Expect = 1e-013
Identities = 171/215 (79%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 134 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 193
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || || |||| | || ||||| || || ||||
Sbjct: 194 ggcactccaccgttgggcaatgggcccgtgtanagaacttaacaatcctcggagaagatg 253
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
| |||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 254 tccatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 313
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 314 aatcaagcattttgaagccagagatagttatgtga 348
>gb|AI167104.1|AI167104 xylem.est.870 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 569
Score = 77.8 bits (39), Expect = 5e-013
Identities = 172/215 (80%), Gaps = 1/215 (0%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 170 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 229
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 230 ggcactccaccgttgggcaatgggc-cgtgtagagaacttaacaatcctcggagaagatg 288
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
| |||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 289 tccatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 348
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 349 aatcaagcattttgaagccagagatagttatgtga 383
>gb|CA925749.1|CA925749 MTU7TL.P5.D09 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 713
Score = 77.8 bits (39), Expect = 5e-013
Identities = 171/215 (79%)
Strand = Plus / Minus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| || || || | ||| || ||||| |
Sbjct: 399 ctgtgatgcgtggagttcgcatcaagaagcatgcttgtatatctagcagtatcatcggat 340
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 339 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 280
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
| |||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 279 tccatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 220
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 219 aatcaagcattttgaagccagagatagttatgtga 185
>gb|CV255021.1|CV255021 WS02411.B21_N12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02411_N12 3', mRNA sequence
Length = 902
Score = 77.8 bits (39), Expect = 5e-013
Identities = 171/215 (79%)
Strand = Plus / Minus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || ||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 484 ctgtgatgcgtggagttcgcgtcaagaagcatgcttgcatatctagcagtatcatcggat 425
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| || ||||| |||||||| || ||||||| | || ||||| || || ||||
Sbjct: 424 ggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagatg 365
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
| |||| |||| || | |||||||| || ||||| ||| | || || ||||||||||
Sbjct: 364 tccatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatca 305
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 304 aatcaagcattttgaagccagagattgttatgtga 270
>gb|BP933667.1|BP933667 BP933667 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-055_A07.r 3', mRNA sequence
Length = 473
Score = 77.8 bits (39), Expect = 5e-013
Identities = 156/195 (80%)
Strand = Plus / Minus
Query: 67 atcaagaagcatgcctgcatctcgaacagcattatcgggtggcactcaactgttggacaa 126
|||||||||||||| ||||| || | ||| || ||||| |||||||| || ||||| |||
Sbjct: 461 atcaagaagcatgcttgcatatctaccagtatcatcggatggcactccaccgttgggcaa 402
Query: 127 tgggcacggatagagaatatgaccatcctgggcgaggatgttcatgggggtgacgaggta 186
||||| || ||||||| | || ||||| || || ||||| |||| |||| || |
Sbjct: 401 tgggcccgtgtagagaacttaacaatcctcggagaagatgtccatgtttgtgatgaaatt 342
Query: 187 tacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttgaagcct 246
|||||||| || ||||| ||| | || || ||||||||||| |||||||||||||||||
Sbjct: 341 tacagcaacggaggtgtggttttaccccacaaagagatcaaatcaagcattttgaagcca 282
Query: 247 gagatcgtcatgtga 261
||||| || ||||||
Sbjct: 281 gagatagttatgtga 267
>gb|DN484786.1|DN484786 K019P78.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone K019P78 3', mRNA sequence
Length = 449
Score = 71.9 bits (36), Expect = 3e-011
Identities = 126/156 (80%)
Strand = Plus / Minus
Query: 106 tggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggat 165
|||||||| |||||||| |||||||| || ||||||| | || ||||| || || |||
Sbjct: 406 tggcactccactgttgggcaatgggcccgtgtagagaacttaacaatcctcggagaagat 347
Query: 166 gttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatc 225
||||||| |||| || | |||||||| || ||||| ||| | || || |||||||||
Sbjct: 346 gttcatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccacaaagagatc 287
Query: 226 aagtcaagcattttgaagcctgagatcgtcatgtga 261
|| ||||||||||||||||| ||||| || ||||||
Sbjct: 286 aaatcaagcattttgaagccagagatagttatgtga 251
>gb|BI130843.1|BI130843 G111P56Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 278
Score = 69.9 bits (35), Expect = 1e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 31 aggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagca 77
|||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct: 232 aggctttcccgctgcactgtgatgcggggagtgcgtatcaagaagca 278
>gb|BU898025.1|BU898025 X073E11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 478
Score = 69.9 bits (35), Expect = 1e-010
Identities = 149/187 (79%)
Strand = Plus / Plus
Query: 75 gcatgcctgcatctcgaacagcattatcgggtggcactcaactgttggacaatgggcacg 134
|||||| ||||| || | ||| || ||||| |||||||| || ||||| |||||||| ||
Sbjct: 1 gcatgcttgcatatctagcagtatcatcggatggcactccaccgttgggcaatgggcccg 60
Query: 135 gatagagaatatgaccatcctgggcgaggatgttcatgggggtgacgaggtatacagcaa 194
||||||| | || ||||| || || |||||||||| |||| || | ||||||||
Sbjct: 61 tgtagagaacttaacgatcctcggagaagatgttcatgtttgtgatgaaatttacagcaa 120
Query: 195 tggcggtgttgttctcccacagaaagagatcaagtcaagcattttgaagcctgagatcgt 254
|| ||||| ||| | || || ||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 121 cggaggtgtggttttaccccacaaagagatcaaatcaagcattttgaagccagagatagt 180
Query: 255 catgtga 261
||||||
Sbjct: 181 tatgtga 187
>gb|CK089268.1|CK089268 B007P10.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B007P10 3', mRNA sequence
Length = 800
Score = 69.9 bits (35), Expect = 1e-010
Identities = 170/215 (79%)
Strand = Plus / Minus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 505 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 446
Query: 107 ggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggatg 166
||||||| | ||||| |||||||| || || |||| | || ||||| || || ||||
Sbjct: 445 ggcactcccccgttgggcaatgggcccgtgtaaagaacttaacaatcctcggagaagatg 386
Query: 167 ttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatca 226
|||||| |||| || | |||||||| || ||||| ||| | || | ||||||||||
Sbjct: 385 ttcatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccccaaagagatca 326
Query: 227 agtcaagcattttgaagcctgagatcgtcatgtga 261
| ||||||||||||||||| ||||| || ||||||
Sbjct: 325 aatcaagcattttgaagccagagatagttatgtga 291
>gb|CK317884.1|CK317884 B9P02h09 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 389
Score = 61.9 bits (31), Expect = 3e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 187 tacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttgaagcct 246
|||||||| || ||||| ||| | || || ||||||||||| |||||||||||||||||
Sbjct: 62 tacagcaacggaggtgtggttttaccccacaaagagatcaaatcaagcattttgaagcca 121
Query: 247 gagatcgtcatgtga 261
||||| || ||||||
Sbjct: 122 gagatagttatgtga 136
>gb|DT469942.1|DT469942 WS01919.C21_G06 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_G06 3', mRNA sequence
Length = 549
Score = 61.9 bits (31), Expect = 3e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 187 tacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttgaagcct 246
|||||||| || ||||| ||| | || || ||||||||||| |||||||||||||||||
Sbjct: 286 tacagcaacggaggtgtggttttaccccacaaagagatcaaatcaagcattttgaagccg 345
Query: 247 gagatcgtcatgtga 261
||||| || ||||||
Sbjct: 346 gagatagttatgtga 360
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcat 86
|||| |||||||| || || |||||||||||||| |||||
Sbjct: 145 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcat 184
>gb|AI165115.1|AI165115 A075p46u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 400
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 210 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 269
Query: 107 ggcactcaactgttggacaatgggc 131
||||||| || ||||| ||||||||
Sbjct: 270 ggcactccaccgttgggcaatgggc 294
>gb|BU816810.1|BU816810 N071F02 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 343
Score = 58.0 bits (29), Expect = 5e-007
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 217 aaagagatcaagtcaagcattttgaagcctgagatcgtcatgtga 261
||||||||||| ||||||||||||||||| ||||| || ||||||
Sbjct: 27 aaagagatcaaatcaagcattttgaagccagagatagttatgtga 71
>gb|CF227459.1|CF227459 PtaD6C1C0105 Poplar cDNA library from wood tissues Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 391
Score = 58.0 bits (29), Expect = 5e-007
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 217 aaagagatcaagtcaagcattttgaagcctgagatcgtcatgtga 261
||||||||||| ||||||||||||||||| ||||| || ||||||
Sbjct: 28 aaagagatcaaatcaagcattttgaagccagagatagttatgtga 72
>gb|CV244974.1|CV244974 WS0256.B21_C10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0256_C10 3', mRNA sequence
Length = 364
Score = 58.0 bits (29), Expect = 5e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 217 aaagagatcaagtcaagcattttgaagcctgagatcgtcatgtga 261
||||||||||| ||||||||||||||||| ||||| || ||||||
Sbjct: 335 aaagagatcaaatcaagcattttgaagccagagatagttatgtga 291
>gb|CF228195.1|CF228195 PtaXM0010A9A0901 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 389
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 217 aaagagatcaagtcaagcattttgaagcc 245
||||||||||| |||||||||||||||||
Sbjct: 22 aaagagatcaaatcaagcattttgaagcc 50
>gb|CK319636.1|CK319636 B9SP06d09 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 480
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 67 atcaagaagcatgcctgcatctcgaacagcattatcgggtggcactcaactgttggacaa 126
|||||||||||||| ||||| || | ||| || ||||| |||||||| || ||||| |||
Sbjct: 343 atcaagaagcatgcttgcatatctagcagtatcatcggatggcactccaccgttgggcaa 402
Query: 127 tgggc 131
|||||
Sbjct: 403 tgggc 407
>gb|BU889976.1|BU889976 P029A06 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 475
Score = 48.1 bits (24), Expect = 4e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 396 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 455
Query: 107 ggcactcaactgttgg 122
||||||| || |||||
Sbjct: 456 ggcactccaccgttgg 471
>gb|AJ767775.1|AJ767775 AJ767775 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100010C07F1, mRNA sequence
Length = 606
Score = 48.1 bits (24), Expect = 4e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcat 86
|||| |||||||| || || ||||||||||||||||||||
Sbjct: 529 ctgtgatgcgtggagttcgcatcaagaagcatgcctgcat 568
>gb|BI069273.1|BI069273 C034P61U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 375
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggt 106
|||| |||||||| || || |||||||||||||| ||||| || | ||| || ||||| |
Sbjct: 92 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcatatctagcagtatcatcggat 151
Query: 107 ggcactc 113
|||||||
Sbjct: 152 ggcactc 158
>gb|BP931581.1|BP931581 BP931581 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-024_O10.r 3', mRNA sequence
Length = 340
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 217 aaagagatcaagtcaagcattttgaagcctgagat 251
||||||||||| |||||||||| |||||| |||||
Sbjct: 327 aaagagatcaaatcaagcatttggaagccagagat 293
>gb|CN521463.1|CN521463 GQ0111.B3_E11 GQ011 Populus trichocarpa x Populus deltoides cDNA
clone GQ0111_E11 5', mRNA sequence
Length = 260
Score = 42.1 bits (21), Expect = 0.027
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 67 atcaagaagcatgcctgcatctcgaacagcattatcgggtggcactcaactgt 119
||||||||||| || ||||| || | ||| || |||||||||||||| |||||
Sbjct: 129 atcaagaagcacgcttgcatatctagcagtatcatcgggtggcactccactgt 181
>gb|AJ776489.1|AJ776489 AJ776489 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400013H12F1, mRNA sequence
Length = 328
Score = 42.1 bits (21), Expect = 0.027
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 67 atcaagaagcatgcctgcatctcgaacagcattatcgggtggcactcaactgt 119
||||||||||| || ||||| || | ||| || |||||||||||||| |||||
Sbjct: 209 atcaagaagcacgcttgcatatctagcagtatcatcgggtggcactccactgt 261
>gb|CK098703.1|CK098703 A026P17.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A026P17 5', mRNA sequence
Length = 385
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 47 ctgtcatgcgtggtgtgcgtatcaagaagcatgcctgcat 86
|||| |||||||| || || |||||||||||||| |||||
Sbjct: 160 ctgtgatgcgtggagttcgcatcaagaagcatgcttgcat 199
>gb|CV232483.1|CV232483 WS0197.B21_L17 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0197_L17 3', mRNA sequence
Length = 794
Score = 38.2 bits (19), Expect = 0.42
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 549 ttaaatgttgtccaatgtaactttcag 575
|||| |||||||||||||| |||||||
Sbjct: 332 ttaactgttgtccaatgtatctttcag 306
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74,447
Number of Sequences: 369679
Number of extensions: 74447
Number of successful extensions: 21214
Number of sequences better than 0.5: 47
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21125
Number of HSP's gapped (non-prelim): 83
length of query: 672
length of database: 203,408,664
effective HSP length: 19
effective length of query: 653
effective length of database: 196,384,763
effective search space: 128239250239
effective search space used: 128239250239
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)