BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404858.2.1
(958 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU868463.1|BU868463 M116B09 Populus flower cDNA library ... 44 0.010
gb|DN485187.1|DN485187 M116B09.3pR Populus female catkins c... 44 0.010
gb|DN494650.1|DN494650 M116B09.5pR Populus female catkins c... 44 0.010
gb|DV465077.1|DV465077 MTUNUL1.P34.F12 NUL Populus fremonti... 44 0.010
gb|BU891645.1|BU891645 P053C09 Populus petioles cDNA librar... 42 0.039
gb|DN496279.1|DN496279 P053C09.5pR Populus petioles cDNA li... 42 0.039
gb|BU886235.1|BU886235 R042E08 Populus root cDNA library Po... 40 0.15
gb|CA926763.1|CA926763 MTU6CR.P18.H05 Aspen root cDNA Libra... 40 0.15
gb|CV266675.1|CV266675 WS0203.B21_K19 PTxN-IB-N-A-11 Populu... 40 0.15
gb|DN488225.1|DN488225 R042E08.3pR Populus root cDNA librar... 40 0.15
gb|DN497911.1|DN497911 R042E08.5pR Populus root cDNA librar... 40 0.15
gb|DT523606.1|DT523606 WS02040.B21_C12 PTxN-IB-N-A-11 Popul... 40 0.15
>gb|BU868463.1|BU868463 M116B09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 705
Score = 44.1 bits (22), Expect = 0.010
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 396 gcacggcattcgcgtgaactgcgtctcccc 425
|||||||||| | |||||||||||||||||
Sbjct: 427 gcacggcattagggtgaactgcgtctcccc 456
>gb|DN485187.1|DN485187 M116B09.3pR Populus female catkins cDNA library Populus trichocarpa
cDNA clone M116B09 3', mRNA sequence
Length = 688
Score = 44.1 bits (22), Expect = 0.010
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 396 gcacggcattcgcgtgaactgcgtctcccc 425
|||||||||| | |||||||||||||||||
Sbjct: 253 gcacggcattagggtgaactgcgtctcccc 224
>gb|DN494650.1|DN494650 M116B09.5pR Populus female catkins cDNA library Populus trichocarpa
cDNA clone M116B09 5', mRNA sequence
Length = 724
Score = 44.1 bits (22), Expect = 0.010
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 396 gcacggcattcgcgtgaactgcgtctcccc 425
|||||||||| | |||||||||||||||||
Sbjct: 436 gcacggcattagggtgaactgcgtctcccc 465
>gb|DV465077.1|DV465077 MTUNUL1.P34.F12 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 900
Score = 44.1 bits (22), Expect = 0.010
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 396 gcacggcattcgcgtgaactgcgtctcccc 425
|||||||||| | |||||||||||||||||
Sbjct: 640 gcacggcattagggtgaactgcgtctcccc 669
>gb|BU891645.1|BU891645 P053C09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 699
Score = 42.1 bits (21), Expect = 0.039
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 gctggacatcatgttcaacaa 131
|||||||||||||||||||||
Sbjct: 310 gctggacatcatgttcaacaa 330
>gb|DN496279.1|DN496279 P053C09.5pR Populus petioles cDNA library Populus tremula cDNA
clone P053C09 5', mRNA sequence
Length = 753
Score = 42.1 bits (21), Expect = 0.039
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 gctggacatcatgttcaacaa 131
|||||||||||||||||||||
Sbjct: 310 gctggacatcatgttcaacaa 330
>gb|BU886235.1|BU886235 R042E08 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 620
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 115 gacatcatgttcaacaacgc 134
||||||||||||||||||||
Sbjct: 383 gacatcatgttcaacaacgc 402
>gb|CA926763.1|CA926763 MTU6CR.P18.H05 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 476
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 115 gacatcatgttcaacaacgc 134
||||||||||||||||||||
Sbjct: 467 gacatcatgttcaacaacgc 448
>gb|CV266675.1|CV266675 WS0203.B21_K19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0203_K19 3', mRNA sequence
Length = 876
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 115 gacatcatgttcaacaacgc 134
||||||||||||||||||||
Sbjct: 624 gacatcatgttcaacaacgc 605
>gb|DN488225.1|DN488225 R042E08.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R042E08 3', mRNA sequence
Length = 882
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 115 gacatcatgttcaacaacgc 134
||||||||||||||||||||
Sbjct: 803 gacatcatgttcaacaacgc 784
>gb|DN497911.1|DN497911 R042E08.5pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R042E08 5', mRNA sequence
Length = 644
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 115 gacatcatgttcaacaacgc 134
||||||||||||||||||||
Sbjct: 404 gacatcatgttcaacaacgc 423
>gb|DT523606.1|DT523606 WS02040.B21_C12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02040_C12 3', mRNA sequence
Length = 794
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 115 gacatcatgttcaacaacgc 134
||||||||||||||||||||
Sbjct: 624 gacatcatgttcaacaacgc 605
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 48,074
Number of Sequences: 369679
Number of extensions: 48074
Number of successful extensions: 13312
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13299
Number of HSP's gapped (non-prelim): 13
length of query: 958
length of database: 203,408,664
effective HSP length: 19
effective length of query: 939
effective length of database: 196,384,763
effective search space: 184405292457
effective search space used: 184405292457
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)