BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.2
(1076 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA823228.1|CA823228 R22G04 two-month-old roots from clon... 70 2e-010
gb|BU835584.1|BU835584 T075G07 Populus apical shoot cDNA li... 68 8e-010
gb|BU832929.1|BU832929 T039H07 Populus apical shoot cDNA li... 64 1e-008
gb|CV246013.1|CV246013 WS0259.B21_P22 PT-MB-N-A-15 Populus ... 64 1e-008
gb|CN520738.1|CN520738 GQ0108.B3_L05 GQ010 Populus trichoca... 54 1e-005
gb|CV240638.1|CV240638 WS0251.B21_O23 PT-MB-N-A-15 Populus ... 54 1e-005
gb|DT469311.1|DT469311 WS01917.C21_G04 PT-DX-N-A-10 Populus... 54 1e-005
gb|BI138167.1|BI138167 F100P23Y Populus flower cDNA library... 42 0.043
gb|CV269504.1|CV269504 WS0208.B21_G24 PTxN-IB-N-A-11 Populu... 42 0.043
>gb|CA823228.1|CA823228 R22G04 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 659
Score = 69.9 bits (35), Expect = 2e-010
Identities = 125/155 (80%)
Strand = Plus / Minus
Query: 574 tagtgagttggcctggtagtcccaatcattccagcatgtgaacacatgtagaaatcgaag 633
|||||||| ||||| |||||||||||||| |||||||| | ||| | ||||| || |
Sbjct: 504 tagtgagtaggccttgtagtcccaatcatcccagcatgagcacagagatagaagtcattg 445
Query: 634 ttccttggatgacagactttgttgtcaacaacagtgccagctggaacattatctggcttt 693
|| |||||||| |||||||||||||||| | || |||| ||| |||||||| || |
Sbjct: 444 tttcttggatggcagactttgttgtcaatgatcgtaccaggtggtacattatcaggagat 385
Query: 694 ccaggaatgaaaaatttagtgtggtgattcttctg 728
||||| |||||||||||||||||| || |||||
Sbjct: 384 ccaggttggaaaaatttagtgtggtggtttttctg 350
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 760 ttctcatcaagaaatttgcaagcctcaat 788
|||||||||||||| ||||| ||||||||
Sbjct: 318 ttctcatcaagaaacttgcacgcctcaat 290
>gb|BU835584.1|BU835584 T075G07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 574
Score = 67.9 bits (34), Expect = 8e-010
Identities = 118/146 (80%)
Strand = Plus / Minus
Query: 574 tagtgagttggcctggtagtcccaatcattccagcatgtgaacacatgtagaaatcgaag 633
|||||||| ||||| |||||||||||||| |||||||| | ||| | ||||| || |
Sbjct: 218 tagtgagtaggccttgtagtcccaatcatcccagcatgagcacagagatagaagtcattg 159
Query: 634 ttccttggatgacagactttgttgtcaacaacagtgccagctggaacattatctggcttt 693
|| |||||||| |||||||||||||||| | || |||| ||| |||||||| || |
Sbjct: 158 tttcttggatggcagactttgttgtcaatgatcgtaccaggtgggacattatcaggagat 99
Query: 694 ccaggaatgaaaaatttagtgtggtg 719
||||| ||||||||||||||||||
Sbjct: 98 ccaggttggaaaaatttagtgtggtg 73
Score = 40.1 bits (20), Expect = 0.17
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 761 tctcatcaagaaatttgcaagcctcaat 788
|||||| |||||| ||||||||||||||
Sbjct: 30 tctcataaagaaacttgcaagcctcaat 3
>gb|BU832929.1|BU832929 T039H07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 563
Score = 63.9 bits (32), Expect = 1e-008
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 574 tagtgagttggcctggtagtcccaatcattccagcatgtgaacacatgtagaaatcgaag 633
|||||||| ||||| |||||||||||||| |||||||| | ||| | ||||| || |
Sbjct: 146 tagtgagtaggccttgtagtcccaatcatcccagcatgagcacagagatagaagtcattg 87
Query: 634 ttccttggatgacagactttgttgtcaa 661
|| |||||||| ||||||||||||||||
Sbjct: 86 tttcttggatggcagactttgttgtcaa 59
>gb|CV246013.1|CV246013 WS0259.B21_P22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0259_P22 3', mRNA sequence
Length = 744
Score = 63.9 bits (32), Expect = 1e-008
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 574 tagtgagttggcctggtagtcccaatcattccagcatgtgaacacatgtagaaatcgaag 633
|||||||| ||||| |||||||||||||| |||||||| | ||| | ||||| || |
Sbjct: 613 tagtgagtaggccttgtagtcccaatcatcccagcatgagcacagagatagaagtcattg 672
Query: 634 ttccttggatgacagactttgttgtcaa 661
|| |||||||| ||||||||||||||||
Sbjct: 673 tttcttggatggcagactttgttgtcaa 700
>gb|CN520738.1|CN520738 GQ0108.B3_L05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_L05 5', mRNA sequence
Length = 554
Score = 54.0 bits (27), Expect = 1e-005
Identities = 132/167 (79%)
Strand = Plus / Minus
Query: 463 ggagcaacaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcacc 522
|||||||| || ||||| ||||||||||| ||||||||||| ||||| | ||||| | |
Sbjct: 231 ggagcaactacagatattgctgttgtgcttctttggtacacataagacaaagagtgaatc 172
Query: 523 agctcctgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagtt 582
| |||||| || ||||||| ||||| ||||| || || | |||||| || |||
Sbjct: 171 aactcctgtagatcatcagctgaaaagccaatctcatctaaaagaacgtgataatgtgtt 112
Query: 583 ggcctggtagtcccaatcattccagcatgtgaacacatgtagaaatc 629
||||| || || || ||||| || ||||||| |||||||||||||||
Sbjct: 111 ggccttgttgttcctatcatccctgcatgtgcacacatgtagaaatc 65
>gb|CV240638.1|CV240638 WS0251.B21_O23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_O23 3', mRNA sequence
Length = 872
Score = 54.0 bits (27), Expect = 1e-005
Identities = 132/167 (79%)
Strand = Plus / Plus
Query: 463 ggagcaacaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcacc 522
|||||||| || ||||| ||||||||||| ||||||||||| ||||| | ||||| | |
Sbjct: 392 ggagcaactacagatattgctgttgtgcttctttggtacacataagacaaagagtgaatc 451
Query: 523 agctcctgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagtt 582
| |||||| || ||||||| ||||| ||||| || || | |||||| || |||
Sbjct: 452 aactcctgtagatcatcagctgaaaagccaatctcatctaaaagaacgtgataatgtgtt 511
Query: 583 ggcctggtagtcccaatcattccagcatgtgaacacatgtagaaatc 629
||||| || || || ||||| || ||||||| |||||||||||||||
Sbjct: 512 ggccttgttgttcctatcatccctgcatgtgcacacatgtagaaatc 558
Score = 50.1 bits (25), Expect = 2e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 702 gaaaaatttagtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccattt 761
||||||||||||||| ||||| ||||| |||| || | ||||||||||| ||| |
Sbjct: 713 gaaaaatttagtgtgatgatttttctgtgcaacaataacagtgaacttgggtgaccagct 772
Query: 762 ctcatcaagaaatttgcaagcctcaatgatttg 794
|||||||| || ||||| ||||||||||||||
Sbjct: 773 ttcatcaaggaacttgcatgcctcaatgatttg 805
>gb|DT469311.1|DT469311 WS01917.C21_G04 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01917_G04 3', mRNA sequence
Length = 809
Score = 54.0 bits (27), Expect = 1e-005
Identities = 132/167 (79%)
Strand = Plus / Plus
Query: 463 ggagcaacaactgatatggctgttgtgctcctttggtacacgtaagagagcgagtgcacc 522
|||||||| || ||||| ||||||||||| ||||||||||| ||||| | ||||| | |
Sbjct: 377 ggagcaactacagatattgctgttgtgcttctttggtacacataagacaaagagtgaatc 436
Query: 523 agctcctgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtgatagtgagtt 582
| |||||| || ||||||| ||||| ||||| || || | |||||| || |||
Sbjct: 437 aactcctgtagatcatcagctgaaaagccaatctcatctaaaagaacgtgataatgtgtt 496
Query: 583 ggcctggtagtcccaatcattccagcatgtgaacacatgtagaaatc 629
||||| || || || ||||| || ||||||| |||||||||||||||
Sbjct: 497 ggccttgttgttcctatcatccctgcatgtgcacacatgtagaaatc 543
Score = 50.1 bits (25), Expect = 2e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 702 gaaaaatttagtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccattt 761
||||||||||||||| ||||| ||||| |||| || | ||||||||||| ||| |
Sbjct: 616 gaaaaatttagtgtgatgatttttctgtgcaacaataacagtgaacttgggtgaccagct 675
Query: 762 ctcatcaagaaatttgcaagcctcaatgatttg 794
|||||||| || ||||| ||||||||||||||
Sbjct: 676 ttcatcaaggaacttgcatgcctcaatgatttg 708
>gb|BI138167.1|BI138167 F100P23Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 514
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 760 ttctcatcaagaaatttgcaagcctcaat 788
|||||||||||||| ||||| ||||||||
Sbjct: 505 ttctcatcaagaaacttgcacgcctcaat 477
>gb|CV269504.1|CV269504 WS0208.B21_G24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0208_G24 3', mRNA sequence
Length = 719
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 574 tagtgagttggcctggtagtcccaatcat 602
|||||||| ||||| ||||||||||||||
Sbjct: 689 tagtgagtaggccttgtagtcccaatcat 717
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 122,906
Number of Sequences: 369679
Number of extensions: 122906
Number of successful extensions: 33767
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33733
Number of HSP's gapped (non-prelim): 28
length of query: 1076
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1057
effective length of database: 196,384,763
effective search space: 207578694491
effective search space used: 207578694491
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)