BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276642.2.1
(1062 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV268506.1|CV268506 WS0205.B21_K21 PTxN-IB-N-A-11 Populu... 72 5e-011
gb|DT482101.1|DT482101 WS02533.BR_O14 PT-MB-N-A-15 Populus ... 64 1e-008
gb|DT487515.1|DT487515 WS02533.B21_O14 PT-MB-N-A-15 Populus... 64 1e-008
gb|CN520782.1|CN520782 GQ0105.B3_I03 GQ010 Populus trichoca... 50 2e-004
gb|CF233492.1|CF233492 PtaJXO0024C2C0206 Poplar cDNA librar... 42 0.043
gb|CK093678.1|CK093678 G128P78.3pR Populus tension wood cDN... 42 0.043
gb|CK103714.1|CK103714 G128P78.5pR Populus tension wood cDN... 42 0.043
gb|AJ777809.1|AJ777809 AJ777809 Populus euphratica root 3-6... 42 0.043
>gb|CV268506.1|CV268506 WS0205.B21_K21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0205_K21 3', mRNA sequence
Length = 739
Score = 71.9 bits (36), Expect = 5e-011
Identities = 132/164 (80%)
Strand = Plus / Plus
Query: 748 gtccatgctcccggaaacacctgagtcgtgcaacgagaaacaccatcccacttgttgtaa 807
||||| ||||| ||||||||||| || |||| |||| ||| || ||||| ||||||||
Sbjct: 501 gtccaagctccaggaaacacctgtgtagtgctgcgagcaacgccgtcccatttgttgtac 560
Query: 808 gtcccacggctattctcagtccactcaccatagtccattcctacaacccagaatgcatat 867
|| | | ||||||||| |||||| | ||| | ||||| || ||||| | |||||||||
Sbjct: 561 gtgcttctgctattctctgtccacactccaaaatccatacccacaacaaaaaatgcatat 620
Query: 868 ccatcaatgtggtaggtctggacagttgagtcattgttctgaaa 911
||||| || |||||| ||||||||| | ||||||||||||||
Sbjct: 621 ccatccatatggtagctctggacagcggtatcattgttctgaaa 664
>gb|DT482101.1|DT482101 WS02533.BR_O14 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_O14 5', mRNA sequence
Length = 802
Score = 63.9 bits (32), Expect = 1e-008
Identities = 131/164 (79%)
Strand = Plus / Minus
Query: 748 gtccatgctcccggaaacacctgagtcgtgcaacgagaaacaccatcccacttgttgtaa 807
||||| ||||| ||||| ||||| || |||| |||| ||| || ||||| ||||||||
Sbjct: 425 gtccaagctccaggaaagacctgtgtagtgctgcgagcaacgccgtcccatttgttgtac 366
Query: 808 gtcccacggctattctcagtccactcaccatagtccattcctacaacccagaatgcatat 867
|| | | ||||||||| |||||| | ||| | ||||| || ||||| | |||||||||
Sbjct: 365 gtgcttctgctattctctgtccacactccaaaatccatacccacaacaaaaaatgcatat 306
Query: 868 ccatcaatgtggtaggtctggacagttgagtcattgttctgaaa 911
||||| || |||||| ||||||||| | ||||||||||||||
Sbjct: 305 ccatccatatggtagctctggacagcggtatcattgttctgaaa 262
>gb|DT487515.1|DT487515 WS02533.B21_O14 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_O14 3', mRNA sequence
Length = 877
Score = 63.9 bits (32), Expect = 1e-008
Identities = 131/164 (79%)
Strand = Plus / Plus
Query: 748 gtccatgctcccggaaacacctgagtcgtgcaacgagaaacaccatcccacttgttgtaa 807
||||| ||||| ||||| ||||| || |||| |||| ||| || ||||| ||||||||
Sbjct: 460 gtccaagctccaggaaagacctgtgtagtgctgcgagcaacgccgtcccatttgttgtac 519
Query: 808 gtcccacggctattctcagtccactcaccatagtccattcctacaacccagaatgcatat 867
|| | | ||||||||| |||||| | ||| | ||||| || ||||| | |||||||||
Sbjct: 520 gtgcttctgctattctctgtccacactccaaaatccatacccacaacaaaaaatgcatat 579
Query: 868 ccatcaatgtggtaggtctggacagttgagtcattgttctgaaa 911
||||| || |||||| ||||||||| | ||||||||||||||
Sbjct: 580 ccatccatatggtagctctggacagcggtatcattgttctgaaa 623
>gb|CN520782.1|CN520782 GQ0105.B3_I03 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_I03 5', mRNA sequence
Length = 426
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 859 aatgcatatccatcaatgtggtaggtctggacagttgagtcattgttctgaaa 911
|||||||||||||| || |||||| ||||||||| | ||||||||||||||
Sbjct: 385 aatgcatatccatccatatggtagctctggacagcggtatcattgttctgaaa 333
>gb|CF233492.1|CF233492 PtaJXO0024C2C0206 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 757
Score = 42.1 bits (21), Expect = 0.043
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 764 acacctgagtcgtgcaacgagaaac 788
|||||||||||||||| ||||||||
Sbjct: 398 acacctgagtcgtgcagcgagaaac 374
>gb|CK093678.1|CK093678 G128P78.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G128P78 3', mRNA sequence
Length = 505
Score = 42.1 bits (21), Expect = 0.043
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 764 acacctgagtcgtgcaacgagaaac 788
|||||||||||||||| ||||||||
Sbjct: 463 acacctgagtcgtgcagcgagaaac 487
>gb|CK103714.1|CK103714 G128P78.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G128P78 5', mRNA sequence
Length = 495
Score = 42.1 bits (21), Expect = 0.043
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 764 acacctgagtcgtgcaacgagaaac 788
|||||||||||||||| ||||||||
Sbjct: 44 acacctgagtcgtgcagcgagaaac 20
>gb|AJ777809.1|AJ777809 AJ777809 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400035D05F1, mRNA sequence
Length = 736
Score = 42.1 bits (21), Expect = 0.043
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 790 ccatcccacttgttgtaagtcccacggctattctcagtccactcaccatagtccattcct 849
||||||||||| || || || || | ||| ||||| ||||| |||||||||||||| ||
Sbjct: 365 ccatcccacttattatatgtgcccctgctgttctctgtccattcaccatagtccatcccc 306
Query: 850 acaac 854
|||||
Sbjct: 305 acaac 301
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 120,988
Number of Sequences: 369679
Number of extensions: 120988
Number of successful extensions: 32107
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32094
Number of HSP's gapped (non-prelim): 13
length of query: 1062
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1043
effective length of database: 196,384,763
effective search space: 204829307809
effective search space used: 204829307809
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)