BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276343.2.2
(1340 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU869948.1|BU869948 Q006D10 Populus flower cDNA library ... 103 2e-020
gb|AF302498.1| Hybrid poplar (Populus trichocarpa x P. delt... 103 2e-020
gb|CV247009.1|CV247009 WS01116.B21_L14 PT-P-FL-A-2 Populus ... 101 7e-020
gb|DT493871.1|DT493871 WS01116.BR_L14 PT-P-FL-A-2 Populus t... 101 7e-020
gb|DT525186.1|DT525186 WS02044.C21_K22 PTxN-IB-N-A-11 Popul... 101 7e-020
gb|AF302497.1| Hybrid poplar (Populus trichocarpa x P. delt... 101 7e-020
gb|DT506115.1|DT506115 WS01812.C21_L17 PTxD-IL-N-A-9 Populu... 96 4e-018
gb|CV228901.1|CV228901 WS01911.B21_J10 PT-DX-N-A-10 Populus... 94 2e-017
gb|CV230483.1|CV230483 WS01916.B21_L01 PT-DX-N-A-10 Populus... 94 2e-017
gb|CX181755.1|CX181755 D03_45-41_07.ab1 leaf inoculated wit... 94 2e-017
gb|DT511269.1|DT511269 WS02416.B21_A04 PTxD-ICC-N-A-14 Popu... 94 2e-017
gb|CF232582.1|CF232582 PtaJXO0013B8B0804 Poplar cDNA librar... 88 1e-015
gb|CN549512.1|CN549512 GQ0241.B3_M20 GQ024 Populus trichoca... 88 1e-015
gb|CX171923.1|CX171923 A08_69-52_02.ab1 leaf inoculated wit... 86 4e-015
gb|DV466749.1|DV466749 MTUNUL1.P9.G03 NUL Populus fremontii... 86 4e-015
gb|BU837954.1|BU837954 T107G10 Populus apical shoot cDNA li... 84 2e-014
gb|BU891137.1|BU891137 P046D11 Populus petioles cDNA librar... 80 2e-013
gb|AJ773313.1|AJ773313 AJ773313 Populus euphratica leaf 3-6... 78 1e-012
gb|AJ778992.1|AJ778992 AJ778992 Populus euphratica cambium ... 78 1e-012
gb|AJ773282.1|AJ773282 AJ773282 Populus euphratica leaf 3-6... 76 4e-012
gb|AJ771756.1|AJ771756 AJ771756 Populus euphratica root 3-6... 70 2e-010
gb|CX180949.1|CX180949 F08_45-109_12.ab1 leaf inoculated wi... 68 9e-010
gb|AJ770392.1|AJ770392 AJ770392 Populus euphratica leaf 3-6... 60 2e-007
gb|CV268549.1|CV268549 WS0205.B21_M17 PTxN-IB-N-A-11 Populu... 56 4e-006
gb|AF302496.1| Hybrid poplar (Populus trichocarpa x P. delt... 56 4e-006
gb|BI069488.1|BI069488 C002P10U Populus strain T89 leaves P... 52 6e-005
gb|AJ769032.1|AJ769032 AJ769032 Populus euphratica leaf adu... 52 6e-005
gb|AJ769200.1|AJ769200 AJ769200 Populus euphratica leaf adu... 52 6e-005
gb|BU813507.1|BU813507 N011C09 Populus bark cDNA library Po... 48 9e-004
gb|CX178561.1|CX178561 A11_45-92_01.ab1 leaf inoculated wit... 48 9e-004
gb|CX657051.1|CX657051 PO02058C10 Poplar SC cDNA library Po... 48 9e-004
gb|DN485527.1|DN485527 N011C09.3pR Populus bark cDNA librar... 48 9e-004
gb|DN495013.1|DN495013 N011C09.5pR Populus bark cDNA librar... 48 9e-004
gb|BU834188.1|BU834188 T058A06 Populus apical shoot cDNA li... 44 0.014
gb|CK090031.1|CK090031 C057P16.3pR Populus strain T89 leave... 40 0.21
gb|CX179733.1|CX179733 G01_45-90_13.ab1 leaf inoculated wit... 40 0.21
gb|CX187163.1|CX187163 D08_45-46_08.ab1 leaf inoculated wit... 40 0.21
>gb|BU869948.1|BU869948 Q006D10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 558
Score = 103 bits (52), Expect = 2e-020
Identities = 214/268 (79%)
Strand = Plus / Plus
Query: 685 ctttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcat 744
|||||||| ||| ||||||| ||||| || || || || || || |||||||||||||||
Sbjct: 126 ctttctgaactagttgttgccttctcacgcgagggacctaccaaggaatatgtgcagcat 185
Query: 745 aagatggtggaaaaggccacagatatttggaacatcatctcaaatggtggttacttatat 804
|||||| || | ||||| | ||||| |||||||| || || | || || || ||||||
Sbjct: 186 aagatgatgcagaaggcttctgatatctggaacatgatttctcaaggaggatatttatat 245
Query: 805 gtttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcatacaatagtc 864
||||| || ||||||||||| ||||||| |||||| |||| || || || || || ||
Sbjct: 246 gtttgtggagatgccaagggcatggctaaagatgtccacagaactctccacactatcgtg 305
Query: 865 caagagcagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatg 924
||| ||||||||||| | || |||||||| || ||||||| ||| ||| | ||||| |||
Sbjct: 306 caacagcagggatctcttgacaactccaagacagagagctttgtgaagggtctgcaaatg 365
Query: 925 gaaggaaggtacctccgtgatgtatggt 952
| || ||||| || |||||||||||||
Sbjct: 366 aatggcaggtatctgcgtgatgtatggt 393
>gb|AF302498.1| Hybrid poplar (Populus trichocarpa x P. deltoides) NADPH-cytochrome
P450 oxydoreductase isoform 3 mRNA, complete cds
Length = 2610
Score = 103 bits (52), Expect = 2e-020
Identities = 214/268 (79%)
Strand = Plus / Plus
Query: 685 ctttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcat 744
|||||||| ||| ||||||| ||||| || || || || || || ||||| |||||||||
Sbjct: 1987 ctttctgaactagttgttgccttctcccgtgagggacctaccaaggaatacgtgcagcat 2046
Query: 745 aagatggtggaaaaggccacagatatttggaacatcatctcaaatggtggttacttatat 804
|||||| || | ||||| | ||||| |||||||| || ||| | ||||| || ||||||
Sbjct: 2047 aagatgatgcagaaggcttctgatatctggaacatgatttcacaaggtggatatttatat 2106
Query: 805 gtttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcatacaatagtc 864
||||| ||||||||||| || ||||||| |||||| |||| | ||| || || || ||
Sbjct: 2107 gtttgtggtgatgccaaaggcatggctaaagatgtccacagagcgctccacactattgtg 2166
Query: 865 caagagcagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatg 924
|||||||||||||| | || ||||| || || || |||| ||| ||||| ||||| |||
Sbjct: 2167 caagagcagggatcccttgacaactcgaagacggaaagctttgtgaagagtctgcaaatg 2226
Query: 925 gaaggaaggtacctccgtgatgtatggt 952
| || ||||| || |||||||||||||
Sbjct: 2227 aatggcaggtatctacgtgatgtatggt 2254
Score = 85.7 bits (43), Expect = 4e-015
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 275 tgcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcatg 334
|||| ||| |||||||||| |||||||||||||||| ||||||||| || ||||||||||
Sbjct: 1577 tgcagccaagatactactctatttcatcatctccaaggatggctccatcaagaattcatg 1636
Query: 335 taacatgtgca 345
| |||||||||
Sbjct: 1637 ttacatgtgca 1647
Score = 40.1 bits (20), Expect = 0.21
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 383 aaggagtttgttcaacatggatgaagaa 410
|||||||||| ||||| |||||||||||
Sbjct: 1685 aaggagtttgctcaacttggatgaagaa 1712
>gb|CV247009.1|CV247009 WS01116.B21_L14 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01116_L14 3', mRNA sequence
Length = 699
Score = 101 bits (51), Expect = 7e-020
Identities = 180/223 (80%)
Strand = Plus / Minus
Query: 730 gaatatgtgcagcataagatggtggaaaaggccacagatatttggaacatcatctcaaat 789
||||||||||||||||||||| || | ||||| | ||||| |||||||| || || |
Sbjct: 568 gaatatgtgcagcataagatgatgcagaaggcttctgatatctggaacatgatttctcaa 509
Query: 790 ggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatg 849
|| || || ||||||||||| || ||||||||||| ||||||| |||||| |||| ||
Sbjct: 508 ggaggatatttatatgtttgtggagatgccaagggcatggctaaagatgtccacagaact 449
Query: 850 cttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgta 909
|| || || || || ||||||||||||||| | || |||||||| || ||||||| |||
Sbjct: 448 ctccacactatcgtgcaagagcagggatctcttgacaactccaagacagagagctttgtg 389
Query: 910 aagagcctgcagatggaaggaaggtacctccgtgatgtatggt 952
||| | ||||| ||| | || ||||| || |||||||||||||
Sbjct: 388 aagggtctgcaaatgaatggcaggtatctgcgtgatgtatggt 346
>gb|DT493871.1|DT493871 WS01116.BR_L14 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01116_L14 5', mRNA sequence
Length = 745
Score = 101 bits (51), Expect = 7e-020
Identities = 180/223 (80%)
Strand = Plus / Plus
Query: 730 gaatatgtgcagcataagatggtggaaaaggccacagatatttggaacatcatctcaaat 789
||||||||||||||||||||| || | ||||| | ||||| |||||||| || || |
Sbjct: 370 gaatatgtgcagcataagatgatgcagaaggcttctgatatctggaacatgatttctcaa 429
Query: 790 ggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatg 849
|| || || ||||||||||| || ||||||||||| ||||||| |||||| |||| ||
Sbjct: 430 ggaggatatttatatgtttgtggagatgccaagggcatggctaaagatgtccacagaact 489
Query: 850 cttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgta 909
|| || || || || ||||||||||||||| | || |||||||| || ||||||| |||
Sbjct: 490 ctccacactatcgtgcaagagcagggatctcttgacaactccaagacagagagctttgtg 549
Query: 910 aagagcctgcagatggaaggaaggtacctccgtgatgtatggt 952
||| | ||||| ||| | || ||||| || |||||||||||||
Sbjct: 550 aagggtctgcaaatgaatggcaggtatctgcgtgatgtatggt 592
>gb|DT525186.1|DT525186 WS02044.C21_K22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02044_K22 3', mRNA sequence
Length = 664
Score = 101 bits (51), Expect = 7e-020
Identities = 180/223 (80%)
Strand = Plus / Minus
Query: 730 gaatatgtgcagcataagatggtggaaaaggccacagatatttggaacatcatctcaaat 789
||||||||||||||||||||| || | ||||| | ||||| |||||||| || || |
Sbjct: 571 gaatatgtgcagcataagatgatgcagaaggcttctgatatctggaacatgatttctcaa 512
Query: 790 ggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatg 849
|| || || ||||||||||| || ||||||||||| ||||||| |||||| |||| ||
Sbjct: 511 ggaggatatttatatgtttgtggagatgccaagggcatggctaaagatgtccacagaact 452
Query: 850 cttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgta 909
|| || || || || ||||||||||||||| | || |||||||| || ||||||| |||
Sbjct: 451 ctccacactatcgtgcaagagcagggatctcttgacaactccaagacagagagctttgtg 392
Query: 910 aagagcctgcagatggaaggaaggtacctccgtgatgtatggt 952
||| | ||||| ||| | || ||||| || |||||||||||||
Sbjct: 391 aagggtctgcaaatgaatggcaggtatctgcgtgatgtatggt 349
>gb|AF302497.1| Hybrid poplar (Populus trichocarpa x P. deltoides) NADPH-cytochrome
P450 oxydoreductase isoform 2 mRNA, complete cds
Length = 2493
Score = 101 bits (51), Expect = 7e-020
Identities = 180/223 (80%)
Strand = Plus / Plus
Query: 730 gaatatgtgcagcataagatggtggaaaaggccacagatatttggaacatcatctcaaat 789
||||||||||||||||||||| || | ||||| | ||||| |||||||| || || |
Sbjct: 1941 gaatatgtgcagcataagatgatgcagaaggcttctgatatctggaacatgatttctcaa 2000
Query: 790 ggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatg 849
|| || || ||||||||||| || ||||||||||| ||||||| |||||| |||| ||
Sbjct: 2001 ggaggatatttatatgtttgtggagatgccaagggcatggctaaagatgtccacagaact 2060
Query: 850 cttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgta 909
|| || || || || ||||||||||||||| | || |||||||| || ||||||| |||
Sbjct: 2061 ctccacactatcgtgcaagagcagggatctcttgacaactccaagacagagagctttgtg 2120
Query: 910 aagagcctgcagatggaaggaaggtacctccgtgatgtatggt 952
||| | ||||| ||| | || ||||| || |||||||||||||
Sbjct: 2121 aagggtctgcaaatgaatggcaggtatctgcgtgatgtatggt 2163
Score = 52.0 bits (26), Expect = 6e-005
Identities = 155/198 (78%)
Strand = Plus / Plus
Query: 148 cctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaa 207
||||||||||||||||| ||| | ||||||||| ||| | ||| || || || || |||
Sbjct: 1359 cctgctggaaaggatgaatatgcacaatggatagttgcaaatcatagaagcctcctggaa 1418
Query: 208 gttatggctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagct 267
|| ||||||| ||| || ||||| || || ||||| ||||| || || || || | ||
Sbjct: 1419 gtcatggctgaatttccatcagccaaacccccacttggagtcttctttgcttcagttgcc 1478
Query: 268 cctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccaga 327
|| || ||| ||| ||||||| || |||||||||||||||| ||||| || || ||
Sbjct: 1479 ccgcgattgctgccaagatactattctatttcatcatctccaagcatggcaccttcaagg 1538
Query: 328 attcatgtaacatgtgca 345
|||||||| |||||||||
Sbjct: 1539 attcatgttacatgtgca 1556
>gb|DT506115.1|DT506115 WS01812.C21_L17 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01812_L17 3', mRNA sequence
Length = 834
Score = 95.6 bits (48), Expect = 4e-018
Identities = 213/268 (79%)
Strand = Plus / Minus
Query: 685 ctttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcat 744
|||||||| ||| ||||||| ||||| || || || || || || ||||| |||||||||
Sbjct: 679 ctttctgaactagttgttgccttctcccgtgagggacctaccaaggaatacgtgcagcat 620
Query: 745 aagatggtggaaaaggccacagatatttggaacatcatctcaaatggtggttacttatat 804
|||||| || | ||||| | ||||| |||||||| || ||| | || || || ||||||
Sbjct: 619 aagatgatgcagaaggcttctgatatctggaacatgatttcacaaggcggatatttatat 560
Query: 805 gtttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcatacaatagtc 864
||||| ||||||||||| || ||||||| |||||| |||| | ||| || || || ||
Sbjct: 559 gtttgtggtgatgccaaaggcatggctaaagatgtccacagagcgctccacactattgtg 500
Query: 865 caagagcagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatg 924
|||||||||||||| | || ||||| || || || |||| ||| ||||| ||||| |||
Sbjct: 499 caagagcagggatcccttgacaactcgaagacggaaagctttgtgaagagtctgcaaatg 440
Query: 925 gaaggaaggtacctccgtgatgtatggt 952
| || ||||| || |||||||||||||
Sbjct: 439 aatggcaggtatctacgtgatgtatggt 412
>gb|CV228901.1|CV228901 WS01911.B21_J10 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01911_J10 3', mRNA sequence
Length = 608
Score = 93.7 bits (47), Expect = 2e-017
Identities = 179/223 (80%)
Strand = Plus / Minus
Query: 730 gaatatgtgcagcataagatggtggaaaaggccacagatatttggaacatcatctcaaat 789
||||||||||||||||||||| || | ||||| | ||||| |||||| | || || |
Sbjct: 575 gaatatgtgcagcataagatgatgcagaaggcatctgatatctggaacgtgatttctcaa 516
Query: 790 ggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatg 849
|| || || ||||||||||| || ||||||||||| ||||||| |||||| |||| ||
Sbjct: 515 ggaggatatttatatgtttgtggagatgccaagggcatggctaaagatgtccacagaact 456
Query: 850 cttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgta 909
|| || || || || ||||||||||||||| | || |||||||| || ||||||| |||
Sbjct: 455 ctccacactatcgtgcaagagcagggatctcttgacaactccaagacagagagctttgtg 396
Query: 910 aagagcctgcagatggaaggaaggtacctccgtgatgtatggt 952
||| | ||||| ||| | || ||||| || |||||||||||||
Sbjct: 395 aagggtctgcaaatgaatggcaggtatctgcgtgatgtatggt 353
>gb|CV230483.1|CV230483 WS01916.B21_L01 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01916_L01 3', mRNA sequence
Length = 724
Score = 93.7 bits (47), Expect = 2e-017
Identities = 179/223 (80%)
Strand = Plus / Minus
Query: 730 gaatatgtgcagcataagatggtggaaaaggccacagatatttggaacatcatctcaaat 789
||||||||||||||||||||| || | ||||| | ||||| |||||| | || || |
Sbjct: 575 gaatatgtgcagcataagatgatgcagaaggcatctgatatctggaacgtgatttctcaa 516
Query: 790 ggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatg 849
|| || || ||||||||||| || ||||||||||| ||||||| |||||| |||| ||
Sbjct: 515 ggaggatatttatatgtttgtggagatgccaagggcatggctaaagatgtccacagaact 456
Query: 850 cttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgta 909
|| || || || || ||||||||||||||| | || |||||||| || ||||||| |||
Sbjct: 455 ctccacactatcgtgcaagagcagggatctcttgacaactccaagacagagagctttgtg 396
Query: 910 aagagcctgcagatggaaggaaggtacctccgtgatgtatggt 952
||| | ||||| ||| | || ||||| || |||||||||||||
Sbjct: 395 aagggtctgcaaatgaatggcaggtatctgcgtgatgtatggt 353
>gb|CX181755.1|CX181755 D03_45-41_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 623
Score = 93.7 bits (47), Expect = 2e-017
Identities = 179/223 (80%)
Strand = Plus / Minus
Query: 730 gaatatgtgcagcataagatggtggaaaaggccacagatatttggaacatcatctcaaat 789
||||| ||||||||||||||| || | ||||| | ||||| |||||||| || ||| |
Sbjct: 604 gaatacgtgcagcataagatgatgcagaaggcttctgatatctggaacatgatttcacaa 545
Query: 790 ggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatg 849
||||| || ||||||||||| ||||||||||| || ||||||| |||||| |||| | |
Sbjct: 544 ggtggatatttatatgtttgtggtgatgccaaaggcatggctaaagatgtccacagagcg 485
Query: 850 cttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgta 909
|| || || || || |||||||||||||| | || ||||| || || || |||| |||
Sbjct: 484 ctccacactattgtgcaagagcagggatcccttgacaactcgaagacggaaagctttgtg 425
Query: 910 aagagcctgcagatggaaggaaggtacctccgtgatgtatggt 952
||||| ||||| ||| | || ||||| || |||||||||||||
Sbjct: 424 aagagtctgcaaatgaatggcaggtatctacgtgatgtatggt 382
>gb|DT511269.1|DT511269 WS02416.B21_A04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_A04 3', mRNA sequence
Length = 713
Score = 93.7 bits (47), Expect = 2e-017
Identities = 179/223 (80%)
Strand = Plus / Minus
Query: 730 gaatatgtgcagcataagatggtggaaaaggccacagatatttggaacatcatctcaaat 789
||||||||||||||||||||| || | ||||| | ||||| |||||||| || || |
Sbjct: 644 gaatatgtgcagcataagatgatgcagaaggcttctgatatctggaacatgatttctcaa 585
Query: 790 ggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatg 849
|| || || ||||||||||| || ||||||||||| ||||||| |||||| |||| ||
Sbjct: 584 ggaggatatttatatgtttgtggagatgccaagggcatggctaaagatgtccacagaact 525
Query: 850 cttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgta 909
|| || || || || ||||||||||||||| | || |||||||| || ||||||| |||
Sbjct: 524 ctccacactatcgtgcaagagcagggatctcttgacaactccaagacagagagctttgtg 465
Query: 910 aagagcctgcagatggaaggaaggtacctccgtgatgtatggt 952
||| | ||||| ||| | || ||||| | |||||||||||||
Sbjct: 464 aagggtctgcaaatgaatggcaggtatttgcgtgatgtatggt 422
>gb|CF232582.1|CF232582 PtaJXO0013B8B0804 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 698
Score = 87.7 bits (44), Expect = 1e-015
Identities = 212/268 (79%)
Strand = Plus / Plus
Query: 685 ctttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcat 744
|||||||| ||| ||||||| ||||| || || || || || || ||||| |||||||||
Sbjct: 333 ctttctgaactagttgttgccttctcccgtgagggacctaccaaggaatacgtgcagcat 392
Query: 745 aagatggtggaaaaggccacagatatttggaacatcatctcaaatggtggttacttatat 804
|||||| || | ||||| | ||||| ||| |||| || ||| | ||||| || |||||
Sbjct: 393 aagatgatgcagaaggcttctgatatctgggacatgatttcacaaggtggatatctatat 452
Query: 805 gtttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcatacaatagtc 864
||||| ||||||||||| || ||||||| |||||| |||| | ||| || || || ||
Sbjct: 453 gtttgtggtgatgccaaaggcatggctaaagatgtccacagagcgctccacactattgtg 512
Query: 865 caagagcagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatg 924
|||||||||||||| | || ||||| || || || |||| ||| ||||| ||||| |||
Sbjct: 513 caagagcagggatccctcgacaactcaaagacagaaagctttgtgaagagtctgcaaatg 572
Query: 925 gaaggaaggtacctccgtgatgtatggt 952
| || ||||| || |||||||||||||
Sbjct: 573 aatggcaggtatctacgtgatgtatggt 600
>gb|CN549512.1|CN549512 GQ0241.B3_M20 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_M20 5', mRNA sequence
Length = 853
Score = 87.7 bits (44), Expect = 1e-015
Identities = 155/192 (80%)
Strand = Plus / Plus
Query: 685 ctttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcat 744
|||||||| ||| ||||||| ||||| || || || || || || ||||| |||||||||
Sbjct: 593 ctttctgaactagttgttgccttctcccgtgagggacctaccaaggaatacgtgcagcat 652
Query: 745 aagatggtggaaaaggccacagatatttggaacatcatctcaaatggtggttacttatat 804
|||||| || | ||||| | ||||| |||||||| || ||| | ||||| || ||||||
Sbjct: 653 aagatgatgcagaaggcttctgatatctggaacatgatttcacaaggtggatatttatat 712
Query: 805 gtttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcatacaatagtc 864
||||| ||||||||||| || ||||||| |||||| |||| | ||| || || || ||
Sbjct: 713 gtttgtggtgatgccaaaggcatggctaaagatgtccacagagcgctccacactattgtg 772
Query: 865 caagagcaggga 876
||||||||||||
Sbjct: 773 caagagcaggga 784
Score = 85.7 bits (43), Expect = 4e-015
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 275 tgcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcatg 334
|||| ||| |||||||||| |||||||||||||||| ||||||||| || ||||||||||
Sbjct: 183 tgcagccaagatactactctatttcatcatctccaaggatggctccatcaagaattcatg 242
Query: 335 taacatgtgca 345
| |||||||||
Sbjct: 243 ttacatgtgca 253
Score = 40.1 bits (20), Expect = 0.21
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 383 aaggagtttgttcaacatggatgaagaa 410
|||||||||| ||||| |||||||||||
Sbjct: 291 aaggagtttgctcaacttggatgaagaa 318
>gb|CX171923.1|CX171923 A08_69-52_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 700
Score = 85.7 bits (43), Expect = 4e-015
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 275 tgcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcatg 334
|||| ||| |||||||||| |||||||||||||||| ||||||||| || ||||||||||
Sbjct: 144 tgcagccaagatactactctatttcatcatctccaaggatggctccatcaagaattcatg 203
Query: 335 taacatgtgca 345
| |||||||||
Sbjct: 204 ttacatgtgca 214
Score = 52.0 bits (26), Expect = 6e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 730 gaatatgtgcagcataagatggtggaaaaggccacagatatttggaacatcatctcaaat 789
||||| ||||||||||||||| || | || || | ||||| |||||||| || ||| |
Sbjct: 599 gaatacgtgcagcataagatgatgcagaaagcttctgatatctggaacatgatttcacaa 658
Query: 790 ggtggttacttatatgtttgcggtgatgccaagg 823
||||| || ||||||||||| |||||||| ||||
Sbjct: 659 ggtggatatttatatgtttgtggtgatgcaaagg 692
Score = 40.1 bits (20), Expect = 0.21
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 383 aaggagtttgttcaacatggatgaagaa 410
|||||||||| ||||| |||||||||||
Sbjct: 252 aaggagtttgctcaacttggatgaagaa 279
>gb|DV466749.1|DV466749 MTUNUL1.P9.G03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 869
Score = 85.7 bits (43), Expect = 4e-015
Identities = 142/175 (81%)
Strand = Plus / Plus
Query: 730 gaatatgtgcagcataagatggtggaaaaggccacagatatttggaacatcatctcaaat 789
||||||||||||||||||||| || | ||||| | ||||| |||||||| || || |
Sbjct: 691 gaatatgtgcagcataagatgatgcagaaggcttctgatatctggaacatgatttctcaa 750
Query: 790 ggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatg 849
|| || || ||||||||||| || ||||||||||| ||||||| |||||| |||| ||
Sbjct: 751 ggaggatatttatatgtttgtggagatgccaagggcatggctaaagatgtccacagaact 810
Query: 850 cttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagct 904
|| || || || || ||||||||||||||| | || |||||||| || |||||||
Sbjct: 811 ctccacactatcgtgcaagagcagggatctcttgacaactccaagacagagagct 865
Score = 42.1 bits (21), Expect = 0.054
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 284 gatactactcaatttcatcatctccaaagatggctccctccagaattcatgtaacatgtg 343
||||||| || |||||||||||||| | ||||| || || || |||||||| |||||||
Sbjct: 245 gatactattctatttcatcatctccgagcatggcaccttcaaggattcatgttacatgtg 304
Query: 344 c 344
|
Sbjct: 305 c 305
Score = 42.1 bits (21), Expect = 0.054
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 148 cctgctggaaaggatgagtattctcaatggata 180
||||||||||||||||| ||| | |||||||||
Sbjct: 109 cctgctggaaaggatgaatatgcacaatggata 141
>gb|BU837954.1|BU837954 T107G10 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 448
Score = 83.8 bits (42), Expect = 2e-014
Identities = 126/154 (81%)
Strand = Plus / Plus
Query: 799 ttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcataca 858
||||||||||| || ||||||||||| ||||||| |||||| |||| || || || ||
Sbjct: 32 ttatatgtttgtggagatgccaagggcatggctaaagatgtccacagaactctccacact 91
Query: 859 atagtccaagagcagggatctttggataactccaaaaccgagagctatgtaaagagcctg 918
|| || ||| ||||||||||| |||| |||||||| || ||||||| ||| ||| | |||
Sbjct: 92 atcgtgcaacagcagggatctctggacaactccaagacagagagctttgtgaagggtctg 151
Query: 919 cagatggaaggaaggtacctccgtgatgtatggt 952
|| ||| | || ||||| || |||||||||||||
Sbjct: 152 caaatgaatggcaggtatctgcgtgatgtatggt 185
>gb|BU891137.1|BU891137 P046D11 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 672
Score = 79.8 bits (40), Expect = 2e-013
Identities = 130/160 (81%)
Strand = Plus / Plus
Query: 685 ctttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcat 744
|||||||| ||| ||||||| ||||| || || || || || || |||||||||||||||
Sbjct: 490 ctttctgaactagttgttgccttctcacgcgagggacctaccaaggaatatgtgcagcat 549
Query: 745 aagatggtggaaaaggccacagatatttggaacatcatctcaaatggtggttacttatat 804
|||||| || | ||||| | ||||| |||||||| || || | || || || ||||||
Sbjct: 550 aagatgatgcagaaggcttctgatatctggaacatgatttctcaaggaggatatttatat 609
Query: 805 gtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || ||||||||||| ||||||| |||||| ||||
Sbjct: 610 gtttgtggagatgccaagggcatggctaaagatgtccaca 649
Score = 52.0 bits (26), Expect = 6e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 284 gatactactcaatttcatcatctccaaagatggctccctccagaattcatgtaacatgtg 343
||||||| || |||||||||||||||| ||||| || || || |||||||| |||||||
Sbjct: 89 gatactattctatttcatcatctccaagcatggcaccttcaaggattcatgttacatgtg 148
Query: 344 ca 345
||
Sbjct: 149 ca 150
>gb|AJ773313.1|AJ773313 AJ773313 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000200008D07F1, mRNA sequence
Length = 626
Score = 77.8 bits (39), Expect = 1e-012
Identities = 213/271 (78%)
Strand = Plus / Plus
Query: 682 gcgctttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcag 741
||||||||||| ||| ||||||| || || || || || || || || ||||| ||||||
Sbjct: 275 gcgctttctgaactagttgttgccttttcccgtgagggacctaccaaggaatacgtgcag 334
Query: 742 cataagatggtggaaaaggccacagatatttggaacatcatctcaaatggtggttactta 801
||||||||| || | ||||| | ||||| ||||| || || ||| | || || || |||
Sbjct: 335 cataagatgatgcagaaggcttccgatatctggaatatgatttcacaaggaggatattta 394
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcatacaata 861
|||||||| ||||||||||| || ||||||| |||||| |||| | ||| || || ||
Sbjct: 395 tatgtttgtggtgatgccaaaggcatggctaaagatgtccacagagcgctccacactatt 454
Query: 862 gtccaagagcagggatctttggataactccaaaaccgagagctatgtaaagagcctgcag 921
|| |||||||||||||| | || ||||| || || || |||| ||| || || |||||
Sbjct: 455 gtgcaagagcagggatccctcgacaactcaaagacagaaagctttgtgaaaagtctgcaa 514
Query: 922 atggaaggaaggtacctccgtgatgtatggt 952
||| | || ||||| || |||||||||||||
Sbjct: 515 atgaatggcaggtatctacgtgatgtatggt 545
Score = 42.1 bits (21), Expect = 0.054
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 508 atcatgattggtcctgggacagggctggctccttttagaggcttcttgcaggaaaggtta 567
||||||||||| ||||| || || | |||||||| ||||| ||| | |||||||| |||
Sbjct: 101 atcatgattggccctggaactggtttagctcctttcagaggtttcctacaggaaagatta 160
Query: 568 gcactgaaacaatctggagcagaactggg 596
|| || ||| |||| ||| | ||||||||
Sbjct: 161 gctctaaaagaatcaggatcggaactggg 189
>gb|AJ778992.1|AJ778992 AJ778992 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600009E08F1, mRNA sequence
Length = 737
Score = 77.8 bits (39), Expect = 1e-012
Identities = 213/271 (78%)
Strand = Plus / Plus
Query: 682 gcgctttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcag 741
||||||||||| ||| ||||||| || || || || || || || || ||||| ||||||
Sbjct: 85 gcgctttctgaactagttgttgccttttcccgtgagggacctaccaaggaatacgtgcag 144
Query: 742 cataagatggtggaaaaggccacagatatttggaacatcatctcaaatggtggttactta 801
||||||||| || | ||||| | ||||| ||||| || || ||| | || || || |||
Sbjct: 145 cataagatgatgcagaaggcttccgatatctggaatatgatttcacaaggaggatattta 204
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcatacaata 861
|||||||| ||||||||||| || ||||||| |||||| |||| | ||| || || ||
Sbjct: 205 tatgtttgtggtgatgccaaaggcatggctaaagatgtccacagagcgctccacactatt 264
Query: 862 gtccaagagcagggatctttggataactccaaaaccgagagctatgtaaagagcctgcag 921
|| |||||||||||||| | || ||||| || || || |||| ||| || || |||||
Sbjct: 265 gtgcaagagcagggatccctcgacaactcaaagacagaaagctttgtgaaaagtctgcaa 324
Query: 922 atggaaggaaggtacctccgtgatgtatggt 952
||| | || ||||| || |||||||||||||
Sbjct: 325 atgaatggcaggtatctacgtgatgtatggt 355
>gb|AJ773282.1|AJ773282 AJ773282 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000200007H03F1, mRNA sequence
Length = 673
Score = 75.8 bits (38), Expect = 4e-012
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 275 tgcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcatg 334
|||||||| ||||||| || |||||||||||||||| |||||||| || ||||||||||
Sbjct: 299 tgcaaccaagatactattctatttcatcatctccaagcatggctccatcaagaattcatg 358
Query: 335 taacatgtgc 344
| ||||||||
Sbjct: 359 ttacatgtgc 368
Score = 42.1 bits (21), Expect = 0.054
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 508 atcatgattggtcctgggacagggctggctccttttagaggcttcttgcaggaaaggtta 567
||||||||||| ||||| || || | |||||||| ||||| ||| | |||||||| |||
Sbjct: 532 atcatgattggccctggaactggtttagctcctttcagaggtttcctacaggaaagatta 591
Query: 568 gcactgaaacaatctggagcagaactggg 596
|| || ||| |||| ||| | ||||||||
Sbjct: 592 gctctaaaagaatcaggatcggaactggg 620
>gb|AJ771756.1|AJ771756 AJ771756 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600005H06F1, mRNA sequence
Length = 562
Score = 69.9 bits (35), Expect = 2e-010
Identities = 131/163 (80%)
Strand = Plus / Minus
Query: 682 gcgctttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcag 741
||||||||||| ||| ||||||| || || || || || || || || ||||| ||||||
Sbjct: 269 gcgctttctgaactagttgttgccttttcccgtgagggacctaccaaggaatacgtgcag 210
Query: 742 cataagatggtggaaaaggccacagatatttggaacatcatctcaaatggtggttactta 801
||||||||| || | ||||| | ||||| ||||| || || ||| | || || || |||
Sbjct: 209 cataagatgatgcagaaggcttccgatatctggaatatgatttcacaaggaggatattta 150
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
|||||||| ||||||||||| || ||||||| |||||| ||||
Sbjct: 149 tatgtttgtggtgatgccaaaggcatggctaaagatgtccaca 107
Score = 42.1 bits (21), Expect = 0.054
Identities = 72/89 (80%)
Strand = Plus / Minus
Query: 508 atcatgattggtcctgggacagggctggctccttttagaggcttcttgcaggaaaggtta 567
||||||||||| ||||| || || | |||||||| ||||| ||| | |||||||| |||
Sbjct: 443 atcatgattggccctggaactggtttagctcctttcagaggtttcctacaggaaagatta 384
Query: 568 gcactgaaacaatctggagcagaactggg 596
|| || ||| |||| ||| | ||||||||
Sbjct: 383 gctctaaaagaatcaggatcggaactggg 355
>gb|CX180949.1|CX180949 F08_45-109_12.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 524
Score = 67.9 bits (34), Expect = 9e-010
Identities = 124/154 (80%)
Strand = Plus / Minus
Query: 799 ttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcataca 858
||||||||||| ||||||||||| || ||||||| |||||| |||| | ||| || ||
Sbjct: 519 ttatatgtttgtggtgatgccaaaggcatggctaaagatgtccacagagcgctccacact 460
Query: 859 atagtccaagagcagggatctttggataactccaaaaccgagagctatgtaaagagcctg 918
|| || |||||||||||||| | || ||||| || || || |||| ||| ||||| |||
Sbjct: 459 attgtgcaagagcagggatcccttgacaactcgaagacggaaagctttgtgaagagtctg 400
Query: 919 cagatggaaggaaggtacctccgtgatgtatggt 952
|| ||| | || ||||| || |||||||||||||
Sbjct: 399 caaatgaatggcaggtatctacgtgatgtatggt 366
>gb|AJ770392.1|AJ770392 AJ770392 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100011C10F1, mRNA sequence
Length = 504
Score = 60.0 bits (30), Expect = 2e-007
Identities = 123/154 (79%)
Strand = Plus / Plus
Query: 799 ttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcataca 858
||||||||||| ||||||||||| || ||||||| |||||| || | || || || |
Sbjct: 29 ttatatgtttgtggtgatgccaaaggcatggctaaagatgtccatagaactctccacgct 88
Query: 859 atagtccaagagcagggatctttggataactccaaaaccgagagctatgtaaagagcctg 918
|| || ||||||||||||||| | || |||||||| || ||||||| ||| || | |||
Sbjct: 89 atcgttcaagagcagggatctcttgacaactccaagacagagagctttgtgaaaggtctg 148
Query: 919 cagatggaaggaaggtacctccgtgatgtatggt 952
|| ||| | || ||||| || |||||||||||||
Sbjct: 149 caaatgaatggcaggtatctgcgtgatgtatggt 182
>gb|CV268549.1|CV268549 WS0205.B21_M17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0205_M17 3', mRNA sequence
Length = 775
Score = 56.0 bits (28), Expect = 4e-006
Identities = 112/140 (80%)
Strand = Plus / Minus
Query: 700 gttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatggtggaaaag 759
||||||||||| |||| |||||| ||| |||||||| || |||||||||||||| |
Sbjct: 627 gttgcattctcaagggaggggccacagaaggaatatgttcaacataagatggtggataga 568
Query: 760 gccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgcc 819
|| |||| || |||| || || || | || ||||| || || || ||||||||||||
Sbjct: 567 gcagcagagatatggactataatttctcaaggaggttatttttacgtgtgcggtgatgcc 508
Query: 820 aagggaatggctagagatgt 839
||||| ||||||||||||||
Sbjct: 507 aagggtatggctagagatgt 488
>gb|AF302496.1| Hybrid poplar (Populus trichocarpa x P. deltoides) NADPH-cytochrome
P450 oxydoreductase isoform 1 mRNA, complete cds
Length = 2498
Score = 56.0 bits (28), Expect = 4e-006
Identities = 112/140 (80%)
Strand = Plus / Plus
Query: 700 gttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatggtggaaaag 759
||||||||||| |||| |||||| ||| |||||||| || |||||||||||||| |
Sbjct: 1908 gttgcattctcaagggaggggccacagaaggaatatgttcaacataagatggtggataga 1967
Query: 760 gccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgcc 819
|| |||| || |||| || || || | || ||||| || || || ||||||||||||
Sbjct: 1968 gcagcagagatatggactataatttctcaaggaggttatttttacgtgtgcggtgatgcc 2027
Query: 820 aagggaatggctagagatgt 839
||||| ||||||||||||||
Sbjct: 2028 aagggtatggctagagatgt 2047
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 73 aaggctgctttgcttgctttagcttctcatgc 104
|||||||||||||||||||| ||| |||||||
Sbjct: 1281 aaggctgctttgcttgctttggctgctcatgc 1312
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 391 tgttcaacatggatgaagaatacaattcctctgga 425
|||||||| |||||||||||| || ||||||||||
Sbjct: 1599 tgttcaacttggatgaagaatgcagttcctctgga 1633
Score = 42.1 bits (21), Expect = 0.054
Identities = 84/105 (80%)
Strand = Plus / Plus
Query: 472 aatttcaagttacctgctgacccatccactccgattatcatgattggtcctgggacaggg 531
|||||||||||||| || || || || ||||| ||||| ||| | |||||||| || ||
Sbjct: 1680 aatttcaagttaccagcagatccttcaactccaattataatggtgggtcctggtactgga 1739
Query: 532 ctggctccttttagaggcttcttgcaggaaaggttagcactgaaa 576
|||| ||||| ||||| || || |||||||| |||| ||||||
Sbjct: 1740 ttggcacctttcagaggatttttacaggaaagaatagccctgaaa 1784
>gb|BI069488.1|BI069488 C002P10U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 253
Score = 52.0 bits (26), Expect = 6e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 685 ctttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcat 744
|||||||| ||| ||||||| ||||| || || || || || || |||||||||||||||
Sbjct: 181 ctttctgaactagttgttgccttctcacgcgagggacctaccaaggaatatgtgcagcat 240
Query: 745 aagatg 750
||||||
Sbjct: 241 aagatg 246
>gb|AJ769032.1|AJ769032 AJ769032 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100024E11F1, mRNA sequence
Length = 633
Score = 52.0 bits (26), Expect = 6e-005
Identities = 155/198 (78%)
Strand = Plus / Plus
Query: 148 cctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaa 207
||||||||||||||||| ||| | ||||||||| ||| | |||||| || || || |||
Sbjct: 251 cctgctggaaaggatgaatatgcacaatggatagttgcaaatcagagaagcctcctggaa 310
Query: 208 gttatggctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagct 267
|| ||||||| ||| || ||||| || || ||||| ||||| || || || || | ||
Sbjct: 311 gtcatggctgaatttccatcagccaaacccccacttggagtcttctttgcttcagttgcc 370
Query: 268 cctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccaga 327
|| || ||| || ||||||| || |||||||||||||||| ||||| || || ||
Sbjct: 371 ccgcgattgctgcccagatactattctatttcatcatctccaagcatggcaccttcaagg 430
Query: 328 attcatgtaacatgtgca 345
|||||||| |||||||||
Sbjct: 431 attcatgttacatgtgca 448
>gb|AJ769200.1|AJ769200 AJ769200 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100026D08F1, mRNA sequence
Length = 618
Score = 52.0 bits (26), Expect = 6e-005
Identities = 155/198 (78%)
Strand = Plus / Plus
Query: 148 cctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaa 207
||||||||||||||||| ||| | ||||||||| ||| | |||||| || || || |||
Sbjct: 251 cctgctggaaaggatgaatatgcacaatggatagttgcaaatcagagaagcctcctggaa 310
Query: 208 gttatggctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagct 267
|| ||||||| ||| || ||||| || || ||||| ||||| || || || || | ||
Sbjct: 311 gtcatggctgaatttccatcagccaaacccccacttggagtcttctttgcttcagttgcc 370
Query: 268 cctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccaga 327
|| || ||| || ||||||| || |||||||||||||||| ||||| || || ||
Sbjct: 371 ccgcgattgctgcccagatactattctatttcatcatctccaagcatggcaccttcaagg 430
Query: 328 attcatgtaacatgtgca 345
|||||||| |||||||||
Sbjct: 431 attcatgttacatgtgca 448
>gb|BU813507.1|BU813507 N011C09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 690
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 73 aaggctgctttgcttgctttagcttctcatgc 104
|||||||||||||||||||| ||| |||||||
Sbjct: 98 aaggctgctttgcttgctttggctgctcatgc 129
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 391 tgttcaacatggatgaagaatacaattcctctgga 425
|||||||| |||||||||||| || ||||||||||
Sbjct: 416 tgttcaacttggatgaagaatgcagttcctctgga 450
Score = 42.1 bits (21), Expect = 0.054
Identities = 84/105 (80%)
Strand = Plus / Plus
Query: 472 aatttcaagttacctgctgacccatccactccgattatcatgattggtcctgggacaggg 531
|||||||||||||| || || || || ||||| ||||| ||| | |||||||| || ||
Sbjct: 497 aatttcaagttaccagcagatccttcaactccaattataatggtgggtcctggtactgga 556
Query: 532 ctggctccttttagaggcttcttgcaggaaaggttagcactgaaa 576
|||| ||||| ||||| || || |||||||| |||| ||||||
Sbjct: 557 ttggcacctttcagaggatttttacaggaaagaatagccctgaaa 601
>gb|CX178561.1|CX178561 A11_45-92_01.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 417
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 73 aaggctgctttgcttgctttagcttctcatgc 104
|||||||||||||||||||| ||| |||||||
Sbjct: 155 aaggctgctttgcttgctttggctgctcatgc 186
>gb|CX657051.1|CX657051 PO02058C10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02058C10 5', mRNA sequence
Length = 573
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 808 tgcggtgatgccaagggaatggctagagatgt 839
||||||||||||||||| |||| |||||||||
Sbjct: 498 tgcggtgatgccaagggtatgggtagagatgt 467
>gb|DN485527.1|DN485527 N011C09.3pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N011C09 3', mRNA sequence
Length = 568
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 808 tgcggtgatgccaagggaatggctagagatgt 839
||||||||||||||||| ||||||||| ||||
Sbjct: 434 tgcggtgatgccaagggtatggctagacatgt 403
>gb|DN495013.1|DN495013 N011C09.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N011C09 5', mRNA sequence
Length = 938
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 73 aaggctgctttgcttgctttagcttctcatgc 104
|||||||||||||||||||| ||| |||||||
Sbjct: 124 aaggctgctttgcttgctttggctgctcatgc 155
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 391 tgttcaacatggatgaagaatacaattcctctgga 425
|||||||| |||||||||||| || ||||||||||
Sbjct: 442 tgttcaacttggatgaagaatgcagttcctctgga 476
Score = 42.1 bits (21), Expect = 0.054
Identities = 84/105 (80%)
Strand = Plus / Plus
Query: 472 aatttcaagttacctgctgacccatccactccgattatcatgattggtcctgggacaggg 531
|||||||||||||| || || || || ||||| ||||| ||| | |||||||| || ||
Sbjct: 523 aatttcaagttaccagcagatccttcaactccaattataatggtgggtcctggtactgga 582
Query: 532 ctggctccttttagaggcttcttgcaggaaaggttagcactgaaa 576
|||| ||||| ||||| || || |||||||| |||| ||||||
Sbjct: 583 ttggcacctttcagaggatttttacaggaaagaatagccctgaaa 627
>gb|BU834188.1|BU834188 T058A06 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 299
Score = 44.1 bits (22), Expect = 0.014
Identities = 70/86 (81%)
Strand = Plus / Plus
Query: 511 atgattggtcctgggacagggctggctccttttagaggcttcttgcaggaaaggttagca 570
|||||||||||||| || || | |||||||| || || ||| | |||||||| |||||
Sbjct: 145 atgattggtcctggaactggtttagctcctttcaggggtttccttcaggaaagattagcc 204
Query: 571 ctgaaacaatctggagcagaactggg 596
| |||| || | ||||||||||||||
Sbjct: 205 cagaaagaagcaggagcagaactggg 230
Score = 40.1 bits (20), Expect = 0.21
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 610 ttctttggatgcaggaaccgtaatatggactacatatatgaagatgag 657
|||||||| |||||||||||| | ||||| | || ||||||||||||
Sbjct: 244 ttctttggttgcaggaaccgtcaaatggattttatctatgaagatgag 291
>gb|CK090031.1|CK090031 C057P16.3pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C057P16 3', mRNA sequence
Length = 497
Score = 40.1 bits (20), Expect = 0.21
Identities = 71/88 (80%)
Strand = Plus / Minus
Query: 865 caagagcagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatg 924
|||||||||||||| | || ||||| || || || |||| ||| ||||| ||||| |||
Sbjct: 482 caagagcagggatccctcgacaactcaaagacagaaagctttgtgaagagtctgcaaatg 423
Query: 925 gaaggaaggtacctccgtgatgtatggt 952
| || ||||| || |||||||||||||
Sbjct: 422 aatggcaggtatctacgtgatgtatggt 395
>gb|CX179733.1|CX179733 G01_45-90_13.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 678
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 73 aaggctgctttgcttgctttagcttctcatgc 104
||||||||||||||||| || ||| |||||||
Sbjct: 491 aaggctgctttgcttgcattggctgctcatgc 522
>gb|CX187163.1|CX187163 D08_45-46_08.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 73 aaggctgctttgcttgctttagcttctcatgc 104
||||||||||||||||| || ||| |||||||
Sbjct: 491 aaggctgctttgcttgcattggctgctcatgc 522
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 176,350
Number of Sequences: 369679
Number of extensions: 176350
Number of successful extensions: 49843
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49671
Number of HSP's gapped (non-prelim): 141
length of query: 1340
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1321
effective length of database: 196,384,763
effective search space: 259424271923
effective search space used: 259424271923
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)