BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2253513.2.1
(746 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK097179.1|CK097179 UB42BPD03.3pR Populus active cambium... 107 6e-022
gb|CV240226.1|CV240226 WS0234.B21_M19 PT-MB-A-13 Populus tr... 101 4e-020
gb|CV257505.1|CV257505 WS0246.B21_N16 PTxD-ICC-N-A-14 Popul... 101 4e-020
gb|DT507435.1|DT507435 WS02418.BR_E03 PTxD-ICC-N-A-14 Popul... 101 4e-020
gb|DT507569.1|DT507569 WS02418.BR_J21 PTxD-ICC-N-A-14 Popul... 101 4e-020
gb|DT512063.1|DT512063 WS02418.B21_E03 PTxD-ICC-N-A-14 Popu... 101 4e-020
gb|DT512195.1|DT512195 WS02418.B21_J21 PTxD-ICC-N-A-14 Popu... 101 4e-020
gb|DT515203.1|DT515203 WS02426.B21_O22 PTxD-ICC-N-A-14 Popu... 101 4e-020
gb|CK088858.1|CK088858 A076P21.3pR Hybrid aspen plasmid lib... 92 4e-017
gb|CX170763.1|CX170763 G07_69-32_13.ab1 leaf inoculated wit... 90 1e-016
gb|CX660230.1|CX660230 PO01019F01 Poplar SC cDNA library Po... 90 1e-016
gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Popul... 86 2e-015
gb|BI127787.1|BI127787 G066P03Y Populus cambium cDNA librar... 72 3e-011
gb|CK091185.1|CK091185 F056P93.3pR Populus flower cDNA libr... 72 3e-011
gb|CV231376.1|CV231376 WS0194.B21_F18 PT-DX-N-A-10 Populus ... 68 5e-010
gb|BU868361.1|BU868361 M115A04 Populus flower cDNA library ... 66 2e-009
gb|CK099450.1|CK099450 A068P23.5pR Hybrid aspen plasmid lib... 62 3e-008
gb|BU824298.1|BU824298 UB62BPE10 Populus tremula cambium cD... 58 5e-007
gb|CK106989.1|CK106989 UB42BPD03.5pR Populus active cambium... 58 5e-007
gb|CX659010.1|CX659010 PO01025C10 Poplar SC cDNA library Po... 58 5e-007
gb|CX659267.1|CX659267 PO01028E05 Poplar SC cDNA library Po... 58 5e-007
gb|CV267435.1|CV267435 WS02031.B21_L19 PTxN-IB-N-A-11 Popul... 56 2e-006
gb|CX656255.1|CX656255 PO02051A03 Poplar SC cDNA library Po... 56 2e-006
gb|CK088726.1|CK088726 A068P23.3pR Hybrid aspen plasmid lib... 46 0.002
gb|CX654661.1|CX654661 PO02057G05 Poplar SC cDNA library Po... 46 0.002
gb|CV252639.1|CV252639 PX0015.B21_H22 PT-X-FL-A-1 Populus t... 40 0.12
gb|CV261347.1|CV261347 WS02016.B21_I14 PTxN-IB-N-A-11 Popul... 40 0.12
gb|CX659658.1|CX659658 PO01033D07 Poplar SC cDNA library Po... 40 0.12
gb|DN484940.1|DN484940 K040P50.3pR Populus apical shoot cDN... 40 0.12
gb|DT506751.1|DT506751 WS02416.BR_G17 PTxD-ICC-N-A-14 Popul... 40 0.12
gb|DT511420.1|DT511420 WS02416.B21_G17 PTxD-ICC-N-A-14 Popu... 40 0.12
gb|DT525892.1|DT525892 WS02046.C21_J03 PTxN-IB-N-A-11 Popul... 40 0.12
gb|CK101997.1|CK101997 G059P90.5pR Populus tension wood cDN... 38 0.47
>gb|CK097179.1|CK097179 UB42BPD03.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB42BPD03 3', mRNA sequence
Length = 740
Score = 107 bits (54), Expect = 6e-022
Identities = 180/222 (81%)
Strand = Plus / Minus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| ||||| ||||| ||||| ||| | ||| |||||||||| ||||| || || ||
Sbjct: 568 tgggcgtacggcatgaacttctttgatttggatgcttggaggagagagaagtgcacggaa 509
Query: 75 cagtaccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctg 134
|||| |||||||||||||| | |||||||||| | || || ||||| | || ||||||
Sbjct: 508 gagtatcattattggcagaacctgaatgagaaccgaaccttgtggaaattggggacgctg 449
Query: 135 ccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgtt 194
||||| || || ||||| || |||||||||||||| || || || || || ||||||||
Sbjct: 448 cccccgggtttaatcacattttactcgacaacaaagccgctagacaagtcatggcatgtc 389
Query: 195 cttggacttggatacaatcctagcatcagcatggaggagatt 236
|| |||||||| || ||||||||||| || ||||| ||||||
Sbjct: 388 ctgggacttgggtataatcctagcattagtatggacgagatt 347
>gb|CV240226.1|CV240226 WS0234.B21_M19 PT-MB-A-13 Populus trichocarpa cDNA clone WS0234_M19
3', mRNA sequence
Length = 733
Score = 101 bits (51), Expect = 4e-020
Identities = 255/323 (78%)
Strand = Plus / Minus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| ||||| ||||| ||||| ||| | ||| |||||||||| ||||| || || ||
Sbjct: 627 tgggcgtacggcatgaacttctttgatttggatgcttggaggagagagaagtgcacggaa 568
Query: 75 cagtaccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctg 134
|||| |||||||||||||| | |||||||||| | || || ||||| | || ||||||
Sbjct: 567 gagtatcattattggcagaacctgaatgagaaccgaaccttgtggaaattggggacgctg 508
Query: 135 ccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgtt 194
||||| || || ||||| || ||||| |||||||| || || || || || ||||||||
Sbjct: 507 cccccgggtttaatcacattttactcaacaacaaagccgctagacaagtcatggcatgtc 448
Query: 195 cttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtg 254
|| |||||||| || ||||||||||| || ||||| |||||| ||| || || |||
Sbjct: 447 ctgggacttgggtataatcctagcattagtatggacgagattcagtctgccgcggtggtg 388
Query: 255 catttcaacggcaacatgaagccctggctggacatcggtatgaaccagttcaggcacctt 314
|||||||| || || |||||||| ||||| || || | |||| |||||| | | |||
Sbjct: 387 catttcaatgggaatatgaagccgtggcttgatattgcaatgacccagtttaaaccccta 328
Query: 315 tggacaaagtatgtggactatga 337
||||||||| |||| ||||||||
Sbjct: 327 tggacaaagcatgttgactatga 305
>gb|CV257505.1|CV257505 WS0246.B21_N16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0246_N16 3', mRNA sequence
Length = 691
Score = 101 bits (51), Expect = 4e-020
Identities = 255/323 (78%)
Strand = Plus / Minus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| ||||| ||||| ||||| ||| | ||| |||||||||| ||||| || || ||
Sbjct: 638 tgggcgtacggcatgaacttctttgatttggatgcttggaggagagagaagtgcacggaa 579
Query: 75 cagtaccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctg 134
|||| |||||||||||||| | |||||||||| | || || ||||| | || ||||||
Sbjct: 578 gagtatcattattggcagaacctgaatgagaaccgaaccttgtggaaattggggacgctg 519
Query: 135 ccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgtt 194
||||| || || ||||| || ||||| |||||||| || || || || || ||||||||
Sbjct: 518 cccccgggtttaatcacattttactcaacaacaaagccgctagacaagtcatggcatgtc 459
Query: 195 cttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtg 254
|| |||||||| || ||||||||||| || ||||| |||||| ||| || || |||
Sbjct: 458 ctgggacttgggtataatcctagcattagtatggacgagattcagtctgccgcggtggtg 399
Query: 255 catttcaacggcaacatgaagccctggctggacatcggtatgaaccagttcaggcacctt 314
|||||||| || || |||||||| ||||| || || | |||| |||||| | | |||
Sbjct: 398 catttcaatgggaatatgaagccgtggcttgatattgcaatgacccagtttaaaccccta 339
Query: 315 tggacaaagtatgtggactatga 337
||||||||| |||| ||||||||
Sbjct: 338 tggacaaagcatgttgactatga 316
>gb|DT507435.1|DT507435 WS02418.BR_E03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_E03 5', mRNA sequence
Length = 735
Score = 101 bits (51), Expect = 4e-020
Identities = 255/323 (78%)
Strand = Plus / Plus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| ||||| ||||| ||||| ||| | ||| |||||||||| ||||| || || ||
Sbjct: 112 tgggcgtacggcatgaacttctttgatttggatgcttggaggagagagaagtgcacggaa 171
Query: 75 cagtaccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctg 134
|||| |||||||||||||| | |||||||||| | || || ||||| | || ||||||
Sbjct: 172 gagtatcattattggcagaacctgaatgagaaccgaaccttgtggaaattggggacgctg 231
Query: 135 ccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgtt 194
||||| || || ||||| || ||||| |||||||| || || || || || ||||||||
Sbjct: 232 cccccgggtttaatcacattttactcaacaacaaagccgctagacaagtcatggcatgtc 291
Query: 195 cttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtg 254
|| |||||||| || ||||||||||| || ||||| |||||| ||| || || |||
Sbjct: 292 ctgggacttgggtataatcctagcattagtatggacgagattcagtctgccgcggtggtg 351
Query: 255 catttcaacggcaacatgaagccctggctggacatcggtatgaaccagttcaggcacctt 314
|||||||| || || |||||||| ||||| || || | |||| |||||| | | |||
Sbjct: 352 catttcaatgggaatatgaagccgtggcttgatattgcaatgacccagtttaaaccccta 411
Query: 315 tggacaaagtatgtggactatga 337
||||||||| |||| ||||||||
Sbjct: 412 tggacaaagcatgttgactatga 434
>gb|DT507569.1|DT507569 WS02418.BR_J21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_J21 5', mRNA sequence
Length = 665
Score = 101 bits (51), Expect = 4e-020
Identities = 255/323 (78%)
Strand = Plus / Plus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| ||||| ||||| ||||| ||| | ||| |||||||||| ||||| || || ||
Sbjct: 29 tgggcgtacggcatgaacttctttgatttggatgcttggaggagagagaagtgcacggaa 88
Query: 75 cagtaccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctg 134
|||| |||||||||||||| | |||||||||| | || || ||||| | || ||||||
Sbjct: 89 gagtatcattattggcagaacctgaatgagaaccgaaccttgtggaaattggggacgctg 148
Query: 135 ccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgtt 194
||||| || || ||||| || ||||| |||||||| || || || || || ||||||||
Sbjct: 149 cccccgggtttaatcacattttactcaacaacaaagccgctagacaagtcatggcatgtc 208
Query: 195 cttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtg 254
|| |||||||| || ||||||||||| || ||||| |||||| ||| || || |||
Sbjct: 209 ctgggacttgggtataatcctagcattagtatggacgagattcagtctgccgcggtggtg 268
Query: 255 catttcaacggcaacatgaagccctggctggacatcggtatgaaccagttcaggcacctt 314
|||||||| || || |||||||| ||||| || || | |||| |||||| | | |||
Sbjct: 269 catttcaatgggaatatgaagccgtggcttgatattgcaatgacccagtttaaaccccta 328
Query: 315 tggacaaagtatgtggactatga 337
||||||||| |||| ||||||||
Sbjct: 329 tggacaaagcatgttgactatga 351
>gb|DT512063.1|DT512063 WS02418.B21_E03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_E03 3', mRNA sequence
Length = 748
Score = 101 bits (51), Expect = 4e-020
Identities = 255/323 (78%)
Strand = Plus / Minus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| ||||| ||||| ||||| ||| | ||| |||||||||| ||||| || || ||
Sbjct: 637 tgggcgtacggcatgaacttctttgatttggatgcttggaggagagagaagtgcacggaa 578
Query: 75 cagtaccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctg 134
|||| |||||||||||||| | |||||||||| | || || ||||| | || ||||||
Sbjct: 577 gagtatcattattggcagaacctgaatgagaaccgaaccttgtggaaattggggacgctg 518
Query: 135 ccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgtt 194
||||| || || ||||| || ||||| |||||||| || || || || || ||||||||
Sbjct: 517 cccccgggtttaatcacattttactcaacaacaaagccgctagacaagtcatggcatgtc 458
Query: 195 cttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtg 254
|| |||||||| || ||||||||||| || ||||| |||||| ||| || || |||
Sbjct: 457 ctgggacttgggtataatcctagcattagtatggacgagattcagtctgccgcggtggtg 398
Query: 255 catttcaacggcaacatgaagccctggctggacatcggtatgaaccagttcaggcacctt 314
|||||||| || || |||||||| ||||| || || | |||| |||||| | | |||
Sbjct: 397 catttcaatgggaatatgaagccgtggcttgatattgcaatgacccagtttaaaccccta 338
Query: 315 tggacaaagtatgtggactatga 337
||||||||| |||| ||||||||
Sbjct: 337 tggacaaagcatgttgactatga 315
>gb|DT512195.1|DT512195 WS02418.B21_J21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_J21 3', mRNA sequence
Length = 665
Score = 101 bits (51), Expect = 4e-020
Identities = 255/323 (78%)
Strand = Plus / Minus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| ||||| ||||| ||||| ||| | ||| |||||||||| ||||| || || ||
Sbjct: 637 tgggcgtacggcatgaacttctttgatttggatgcttggaggagagagaagtgcacggaa 578
Query: 75 cagtaccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctg 134
|||| |||||||||||||| | |||||||||| | || || ||||| | || ||||||
Sbjct: 577 gagtatcattattggcagaacctgaatgagaaccgaaccttgtggaaattggggacgctg 518
Query: 135 ccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgtt 194
||||| || || ||||| || ||||| |||||||| || || || || || ||||||||
Sbjct: 517 cccccgggtttaatcacattttactcaacaacaaagccgctagacaagtcatggcatgtc 458
Query: 195 cttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtg 254
|| |||||||| || ||||||||||| || ||||| |||||| ||| || || |||
Sbjct: 457 ctgggacttgggtataatcctagcattagtatggacgagattcagtctgccgcggtggtg 398
Query: 255 catttcaacggcaacatgaagccctggctggacatcggtatgaaccagttcaggcacctt 314
|||||||| || || |||||||| ||||| || || | |||| |||||| | | |||
Sbjct: 397 catttcaatgggaatatgaagccgtggcttgatattgcaatgacccagtttaaaccccta 338
Query: 315 tggacaaagtatgtggactatga 337
||||||||| |||| ||||||||
Sbjct: 337 tggacaaagcatgttgactatga 315
>gb|DT515203.1|DT515203 WS02426.B21_O22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_O22 3', mRNA sequence
Length = 918
Score = 101 bits (51), Expect = 4e-020
Identities = 255/323 (78%)
Strand = Plus / Minus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| ||||| ||||| ||||| ||| | ||| |||||||||| ||||| || || ||
Sbjct: 637 tgggcgtacggcatgaacttctttgatttggatgcttggaggagagagaagtgcacggaa 578
Query: 75 cagtaccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctg 134
|||| |||||||||||||| | |||||||||| | || || ||||| | || ||||||
Sbjct: 577 gagtatcattattggcagaacctgaatgagaaccgaaccttgtggaaattggggacgctg 518
Query: 135 ccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgtt 194
||||| || || ||||| || ||||| |||||||| || || || || || ||||||||
Sbjct: 517 cccccgggtttaatcacattttactcaacaacaaagccgctagacaagtcatggcatgtc 458
Query: 195 cttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtg 254
|| |||||||| || ||||||||||| || ||||| |||||| ||| || || |||
Sbjct: 457 ctgggacttgggtataatcctagcattagtatggacgagattcagtctgccgcggtggtg 398
Query: 255 catttcaacggcaacatgaagccctggctggacatcggtatgaaccagttcaggcacctt 314
|||||||| || || |||||||| ||||| || || | |||| |||||| | | |||
Sbjct: 397 catttcaatgggaatatgaagccgtggcttgatattgcaatgacccagtttaaaccccta 338
Query: 315 tggacaaagtatgtggactatga 337
||||||||| |||| ||||||||
Sbjct: 337 tggacaaagcatgttgactatga 315
>gb|CK088858.1|CK088858 A076P21.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A076P21 3', mRNA sequence
Length = 708
Score = 91.7 bits (46), Expect = 4e-017
Identities = 151/186 (81%)
Strand = Plus / Minus
Query: 51 tggaggagggagaaatgtactgagcagtaccattattggcagaatcagaatgagaacagg 110
|||||||| ||||| || || || |||| |||||||||||||| | |||||||||| |
Sbjct: 617 tggaggagagagaagtgcacggaagagtatcattattggcagaacctgaatgagaaccga 558
Query: 111 acattatggaagctaggaacgctgccccctggcttgatcactttctactcgacaacaaaa 170
|| || ||||| | || ||||||||||| || || ||||| || ||||||||||||||
Sbjct: 557 accttgtggaaattggggacgctgcccccgggtttaatcacattttactcgacaacaaag 498
Query: 171 cctctggagaaatcttggcatgttcttggacttggatacaatcctagcatcagcatggag 230
|| || || || || |||||||| || |||||||| || ||||||||||| || |||||
Sbjct: 497 ccgctagacaagtcatggcatgtcctgggacttgggtataatcctagcattagtatggac 438
Query: 231 gagatt 236
||||||
Sbjct: 437 gagatt 432
>gb|CX170763.1|CX170763 G07_69-32_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 488
Score = 89.7 bits (45), Expect = 1e-016
Identities = 132/161 (81%)
Strand = Plus / Minus
Query: 76 agtaccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctgc 135
|||| |||||||||||||| | |||||||||| | || || ||||| | || |||||||
Sbjct: 458 agtatcattattggcagaacctgaatgagaaccgaaccttgtggaaattggggacgctgc 399
Query: 136 cccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttc 195
|||| || || ||||| || |||||||||||||| || || || || || |||||||| |
Sbjct: 398 ccccgggtttaatcacattttactcgacaacaaagccgctagacaagtcatggcatgtcc 339
Query: 196 ttggacttggatacaatcctagcatcagcatggaggagatt 236
| |||||||| || ||||||||||| || ||||| ||||||
Sbjct: 338 tgggacttgggtataatcctagcattagtatggatgagatt 298
>gb|CX660230.1|CX660230 PO01019F01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01019F01 5', mRNA sequence
Length = 636
Score = 89.7 bits (45), Expect = 1e-016
Identities = 213/269 (79%)
Strand = Plus / Plus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| ||||| ||||| ||||| ||| | ||| |||||||||| ||||| || || ||
Sbjct: 3 tgggcgtacggcatgaacttctttgatttggatgcttggaggagagagaagtgcacggaa 62
Query: 75 cagtaccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctg 134
|||| |||||||||||||| | |||||||||| | || || ||||| | || ||||||
Sbjct: 63 gagtatcattattggcagaacctgaatgagaaccgaaccttgtggaaattggggacgctg 122
Query: 135 ccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgtt 194
||||| || || ||||| || ||||| |||||||| || || || || || ||||||||
Sbjct: 123 cccccgggtttaatcacattttactcaacaacaaagccgctagacaagtcatggcatgtc 182
Query: 195 cttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtg 254
|| |||||||| || || || ||||| || ||||| |||||| ||| ||||| |||
Sbjct: 183 ctgggacttgggtataacccaagcattagtatggacgagattcagtctgccgctgtggtg 242
Query: 255 catttcaacggcaacatgaagccctggct 283
|||||||| || || |||||||| |||||
Sbjct: 243 catttcaatgggaatatgaagccgtggct 271
>gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_M05 3', mRNA sequence
Length = 718
Score = 85.7 bits (43), Expect = 2e-015
Identities = 208/263 (79%)
Strand = Plus / Minus
Query: 39 gatcttgattcttggaggagggagaaatgtactgagcagtaccattattggcagaatcag 98
||||||||| |||||||| | |||||||| || ||||| || ||||||||||||| | |
Sbjct: 542 gatcttgatgcttggaggcgtgagaaatgcacagagcactatcattattggcagagcctg 483
Query: 99 aatgagaacaggacattatggaagctaggaacgctgccccctggcttgatcactttctac 158
|||||| | | || | ||||| | || || || || ||||||||||| || ||||||
Sbjct: 482 aatgaggatcgtactctttggaaattgggtactctcccacctggcttgattaccttctac 423
Query: 159 tcgacaacaaaacctctggagaaatcttggcatgttcttggacttggatacaatcctagc 218
|| || ||||| | ||||| ||||| |||||||| ||||| || ||||| ||||| ||
Sbjct: 422 tccacgacaaagtcactggacaaatcctggcatgtgcttggtctcggatataatccaagt 363
Query: 219 atcagcatggaggagattagaaatgctgctgttgtgcatttcaacggcaacatgaagccc 278
|| |||||||| ||||| || || |||||||| | |||| ||| || |||||||| ||
Sbjct: 362 attagcatggatgagatcagcaacgctgctgtcattcattacaatggaaacatgaaacca 303
Query: 279 tggctggacatcggtatgaacca 301
||||| ||||| | |||||||||
Sbjct: 302 tggcttgacattgctatgaacca 280
>gb|BI127787.1|BI127787 G066P03Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 497
Score = 71.9 bits (36), Expect = 3e-011
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 129 acgctgccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttgg 188
||||||||||| || || ||||| || |||||||||||||| || || || || || |||
Sbjct: 42 acgctgcccccgggtttaatcacattttactcgacaacaaagccgctagacaagtcatgg 101
Query: 189 catgttcttggacttggatacaatcctagcatcagcatggaggagatt 236
||||| || |||||||| || ||||||||||| || ||||| ||||||
Sbjct: 102 catgtcctgggacttgggtataatcctagcattagtatggacgagatt 149
>gb|CK091185.1|CK091185 F056P93.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F056P93 3', mRNA sequence
Length = 724
Score = 71.9 bits (36), Expect = 3e-011
Identities = 168/212 (79%)
Strand = Plus / Minus
Query: 39 gatcttgattcttggaggagggagaaatgtactgagcagtaccattattggcagaatcag 98
||||||||| |||||||| | |||||||| || ||||| || ||||||||||||| | |
Sbjct: 617 gatcttgatgcttggaggcgtgagaaatgcacagagcactatcattattggcagagcctg 558
Query: 99 aatgagaacaggacattatggaagctaggaacgctgccccctggcttgatcactttctac 158
|||||| | | || | ||||| | || || || || ||||| |||||||| ||||||
Sbjct: 557 aatgaggatcgtactctttggaaattgggtactctcccacctggtttgatcaccttctac 498
Query: 159 tcgacaacaaaacctctggagaaatcttggcatgttcttggacttggatacaatcctagc 218
|| || ||||| | ||||| ||||| |||||||| ||||| || ||||| ||||| ||
Sbjct: 497 tccacgacaaagtcactggacaaatcctggcatgtgcttggtctcggatataatccaagt 438
Query: 219 atcagcatggaggagattagaaatgctgctgt 250
|| |||||||| ||||| || || ||||||||
Sbjct: 437 attagcatggatgagatcagcaacgctgctgt 406
>gb|CV231376.1|CV231376 WS0194.B21_F18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0194_F18 3', mRNA sequence
Length = 531
Score = 67.9 bits (34), Expect = 5e-010
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 147 atcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttgga 206
||||| || |||||||||||||| || || || || || |||||||| || ||||||||
Sbjct: 520 atcacattttactcgacaacaaagccgctagacaagtcatggcatgtcctgggacttggg 461
Query: 207 tacaatcctagcatcagcatggaggagatt 236
|||||||||||||| || ||||| ||||||
Sbjct: 460 tacaatcctagcattagtatggatgagatt 431
>gb|BU868361.1|BU868361 M115A04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 490
Score = 65.9 bits (33), Expect = 2e-009
Identities = 165/209 (78%)
Strand = Plus / Plus
Query: 129 acgctgccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttgg 188
||||||||||| || || ||||| || ||||| |||||||| || || || || || |||
Sbjct: 26 acgctgcccccgggtttaatcacattttactcaacaacaaagccgctagacaagtcatgg 85
Query: 189 catgttcttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgct 248
||||| || |||||||| || ||||||||||| || ||||| |||||| ||| ||
Sbjct: 86 catgtcctgggacttgggtataatcctagcattagtatggacgagattcagtctgccgcg 145
Query: 249 gttgtgcatttcaacggcaacatgaagccctggctggacatcggtatgaaccagttcagg 308
|| ||||||||||| || || |||||||| ||||| || || | |||| |||||| |
Sbjct: 146 gtggtgcatttcaatgggaatatgaagccgtggcttgatattgcaatgacccagtttaaa 205
Query: 309 cacctttggacaaagtatgtggactatga 337
| ||| ||||||||| |||| ||||||||
Sbjct: 206 cccctatggacaaagcatgttgactatga 234
>gb|CK099450.1|CK099450 A068P23.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A068P23 5', mRNA sequence
Length = 579
Score = 61.9 bits (31), Expect = 3e-008
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 39 gatcttgattcttggaggagggagaaatgtactgagcagtaccattattggcaga 93
||||||||| | |||||| |||||||||| || |||||||| |||||||||||||
Sbjct: 460 gatcttgatgcatggaggcgggagaaatgcacagagcagtatcattattggcaga 514
>gb|BU824298.1|BU824298 UB62BPE10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 429
Score = 58.0 bits (29), Expect = 5e-007
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 138 cctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttctt 197
|||||||||||||| || ||||| || || || | ||||| ||||| |||||||| |||
Sbjct: 81 cctggcttgatcaccttttactcaacgacgaagtccctggacaaatcctggcatgtgctt 140
Query: 198 ggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgt 250
|| || ||||| ||||| || || || ||||| ||||| || |||||||||||
Sbjct: 141 ggcctcggatataatccaagtattagtatggacgagatcagcaatgctgctgt 193
>gb|CK106989.1|CK106989 UB42BPD03.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB42BPD03 5', mRNA sequence
Length = 319
Score = 58.0 bits (29), Expect = 5e-007
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| ||||| ||||| ||||| ||| | ||| |||||||||| ||||| || || ||
Sbjct: 167 tgggcgtacggcatgaacttctttgatttggatgcttggaggagagagaagtgcacggaa 226
Query: 75 cagtaccattattggcagaatcagaatgagaac 107
|||| |||||||||||||| | ||||||||||
Sbjct: 227 gagtatcattattggcagaacctgaatgagaac 259
>gb|CX659010.1|CX659010 PO01025C10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01025C10 5', mRNA sequence
Length = 654
Score = 58.0 bits (29), Expect = 5e-007
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| ||||| ||||| ||||| ||| | ||| |||||||||| ||||| || || ||
Sbjct: 516 tgggcgtacggcatgaacttctttgatttggatgcttggaggagagagaagtgcacggaa 575
Query: 75 cagtaccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctg 134
|||| |||||||||||||| | |||||||||| | || || ||||| | || ||||||
Sbjct: 576 gagtatcattattggcagaacctgaatgagaaccgaaccttgtggaaattggggacgctg 635
Query: 135 ccccc 139
|||||
Sbjct: 636 ccccc 640
>gb|CX659267.1|CX659267 PO01028E05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01028E05 5', mRNA sequence
Length = 623
Score = 58.0 bits (29), Expect = 5e-007
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| ||||| ||||| ||||| ||| | ||| |||||||||| ||||| || || ||
Sbjct: 516 tgggcgtacggcatgaacttctttgatttggatgcttggaggagagagaagtgcacggaa 575
Query: 75 cagtaccattattggcagaatcagaatgagaac 107
|||| |||||||||||||| | ||||||||||
Sbjct: 576 gagtatcattattggcagaacctgaatgagaac 608
>gb|CV267435.1|CV267435 WS02031.B21_L19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_L19 3', mRNA sequence
Length = 510
Score = 56.0 bits (28), Expect = 2e-006
Identities = 151/192 (78%)
Strand = Plus / Minus
Query: 146 gatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttgg 205
|||||| || ||||| |||||||| || || || || || |||||||| || ||||||||
Sbjct: 510 gatcacattttactcaacaacaaagccgctagacaagtcatggcatgtcctgggacttgg 451
Query: 206 atacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacgg 265
|| ||||||||||| || ||||| |||||| ||| || || ||||||||||| ||
Sbjct: 450 gtataatcctagcattagtatggacgagattcagtctgccgcggtggtgcatttcaatgg 391
Query: 266 caacatgaagccctggctggacatcggtatgaaccagttcaggcacctttggacaaagta 325
|| |||||||| ||||| || || | |||| |||||| | | ||| ||||||||| |
Sbjct: 390 gaatatgaagccgtggcttgatattgcaatgacccagtttaaacccctatggacaaagca 331
Query: 326 tgtggactatga 337
||| ||||||||
Sbjct: 330 tgttgactatga 319
>gb|CX656255.1|CX656255 PO02051A03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02051A03 5', mRNA sequence
Length = 297
Score = 56.0 bits (28), Expect = 2e-006
Identities = 166/212 (78%)
Strand = Plus / Plus
Query: 39 gatcttgattcttggaggagggagaaatgtactgagcagtaccattattggcagaatcag 98
||||||||| |||||||| | |||||||| || ||||| || ||||||||||||| | |
Sbjct: 86 gatcttgatgcttggaggcgtgagaaatgcacagagcactatcattattggcagagcctg 145
Query: 99 aatgagaacaggacattatggaagctaggaacgctgccccctggcttgatcactttctac 158
|||||| | | || | ||||| | || || || || ||||||||||| || ||||||
Sbjct: 146 aatgaggatcgcactctttggaaattgggtactctcccacctggcttgattaccttctac 205
Query: 159 tcgacaacaaaacctctggagaaatcttggcatgttcttggacttggatacaatcctagc 218
|| || | ||| | ||||| ||||| |||||||| ||||| || ||||| ||||| ||
Sbjct: 206 tccacgaaaaagtcactggacaaatcctggcatgtgcttggtctcggatataatccaagt 265
Query: 219 atcagcatggaggagattagaaatgctgctgt 250
|| | |||||| ||||| || || ||||||||
Sbjct: 266 attaccatggatgagatcagcaacgctgctgt 297
>gb|CK088726.1|CK088726 A068P23.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A068P23 3', mRNA sequence
Length = 684
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 180 aaatcttggcatgttcttggacttggatacaatcctagcatcagcatggaggagattaga 239
||||| |||||||| ||||| || ||||| ||||| || || || ||||| ||||| ||
Sbjct: 449 aaatcctggcatgtgcttggcctcggatataatccaagtattagtatggacgagatcagc 390
Query: 240 aatgctgctgt 250
|||||||||||
Sbjct: 389 aatgctgctgt 379
>gb|CX654661.1|CX654661 PO02057G05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02057G05 5', mRNA sequence
Length = 368
Score = 46.1 bits (23), Expect = 0.002
Identities = 182/235 (77%)
Strand = Plus / Plus
Query: 49 cttggaggagggagaaatgtactgagcagtaccattattggcagaatcagaatgagaaca 108
|||||||||| ||||| || || || |||| ||||||||||| || | |||||| |||
Sbjct: 14 cttggaggagagagaagtgcacggaaaagtatcattattggcaaaacctgaatgaaaacc 73
Query: 109 ggacattatggaagctaggaacgctgccccctggcttgatcactttctactcgacaacaa 168
| || || ||||| | || ||||||||||| || || |||| || ||||| |||||||
Sbjct: 74 gaaccttgtggaaattggggacgctgcccccgggtttaatcaaattttactcaacaacaa 133
Query: 169 aacctctggagaaatcttggcatgttcttggacttggatacaatcctagcatcagcatgg 228
| || || | || || |||||||| || |||||||| || || || ||||| || ||||
Sbjct: 134 agccgctaaacaagtcatggcatgtcctgggacttgggtataacccaagcattagtatgg 193
Query: 229 aggagattagaaatgctgctgttgtgcatttcaacggcaacatgaagccctggct 283
| |||||| ||| ||||| ||||||||||| || || |||||||| |||||
Sbjct: 194 acgagattcagtctgccgctgtggtgcatttcaatgggaatatgaagccgtggct 248
>gb|CV252639.1|CV252639 PX0015.B21_H22 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_H22 3', mRNA sequence
Length = 472
Score = 40.1 bits (20), Expect = 0.12
Identities = 110/140 (78%)
Strand = Plus / Minus
Query: 198 ggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcat 257
|||||||| || ||||||||||| || ||||| |||||| ||| || || ||||||
Sbjct: 447 ggacttgggtataatcctagcattagtatggacgagattcagtctgccgcggtggtgcat 388
Query: 258 ttcaacggcaacatgaagccctggctggacatcggtatgaaccagttcaggcacctttgg 317
||||| || || |||||||| ||||| || || | |||| |||||| | | ||| |||
Sbjct: 387 ttcaatgggaatatgaagccgtggcttgatattgcaatgacccagtttaaacccctatgg 328
Query: 318 acaaagtatgtggactatga 337
|||||| |||| ||||||||
Sbjct: 327 acaaagcatgttgactatga 308
>gb|CV261347.1|CV261347 WS02016.B21_I14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_I14 3', mRNA sequence
Length = 742
Score = 40.1 bits (20), Expect = 0.12
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 239 aaatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||| |||||||| || | ||||| ||||||||||| ||||||||
Sbjct: 531 aaatgcagctgttgtccactataacggtaacatgaagccatggctgga 484
>gb|CX659658.1|CX659658 PO01033D07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01033D07 5', mRNA sequence
Length = 485
Score = 40.1 bits (20), Expect = 0.12
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 189 catgttcttggacttggatacaatcctagcatcagcatggaggagatt 236
||||| || |||||||| || ||||||||||| || ||||| ||||||
Sbjct: 1 catgtcctgggacttgggtataatcctagcattagtatggacgagatt 48
>gb|DN484940.1|DN484940 K040P50.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone K040P50 3', mRNA sequence
Length = 731
Score = 40.1 bits (20), Expect = 0.12
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 239 aaatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||| |||||||| || | ||||| ||||||||||| ||||||||
Sbjct: 506 aaatgcagctgttgtccactataacggtaacatgaagccatggctgga 459
>gb|DT506751.1|DT506751 WS02416.BR_G17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_G17 5', mRNA sequence
Length = 560
Score = 40.1 bits (20), Expect = 0.12
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 239 aaatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||| |||||||| || | ||||| ||||||||||| ||||||||
Sbjct: 27 aaatgcagctgttgtccactataacggtaacatgaagccatggctgga 74
>gb|DT511420.1|DT511420 WS02416.B21_G17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_G17 3', mRNA sequence
Length = 560
Score = 40.1 bits (20), Expect = 0.12
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 239 aaatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||| |||||||| || | ||||| ||||||||||| ||||||||
Sbjct: 534 aaatgcagctgttgtccactataacggtaacatgaagccatggctgga 487
>gb|DT525892.1|DT525892 WS02046.C21_J03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_J03 3', mRNA sequence
Length = 743
Score = 40.1 bits (20), Expect = 0.12
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 239 aaatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||| |||||||| || | ||||| ||||||||||| ||||||||
Sbjct: 532 aaatgcagctgttgtccactataacggtaacatgaagccatggctgga 485
>gb|CK101997.1|CK101997 G059P90.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G059P90 5', mRNA
sequence
Length = 324
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 38 cgatcttgattcttggagg 56
|||||||||||||||||||
Sbjct: 39 cgatcttgattcttggagg 57
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 84,569
Number of Sequences: 369679
Number of extensions: 84569
Number of successful extensions: 22856
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22801
Number of HSP's gapped (non-prelim): 53
length of query: 746
length of database: 203,408,664
effective HSP length: 19
effective length of query: 727
effective length of database: 196,384,763
effective search space: 142771722701
effective search space used: 142771722701
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)