BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.28
(3878 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY196961.1| Populus tremuloides cellulose synthase 6 (Ce... 345 8e-093
gb|AY055724.2| Populus tremuloides cellulose synthase (CesA... 190 3e-046
gb|CV244615.1|CV244615 WS0255.B21_C09 PT-MB-N-A-15 Populus ... 182 7e-044
gb|DT489371.1|DT489371 WS02542.B21_A18 PT-MB-N-A-15 Populus... 182 7e-044
gb|CA926496.1|CA926496 MTU6CR.P15.F11 Aspen root cDNA Libra... 176 4e-042
gb|CA926817.1|CA926817 MTU6CR.P1.E04 Aspen root cDNA Librar... 176 4e-042
gb|CN520281.1|CN520281 GQ0105.B3_A14 GQ010 Populus trichoca... 151 2e-034
gb|DT473511.1|DT473511 WS01229.BR_N17 PT-GT-FL-A-3 Populus ... 149 9e-034
gb|AY162181.1| Populus tremuloides cellulose synthase (CesA... 145 1e-032
gb|AY573572.1| Populus tremula x Populus tremuloides cellul... 145 1e-032
gb|AY162180.1| Populus tremuloides cellulose synthase (CesA... 143 6e-032
gb|AJ778214.1|AJ778214 AJ778214 Populus euphratica root 3-6... 137 4e-030
gb|CN549808.1|CN549808 GQ0241.B3_H11 GQ024 Populus trichoca... 135 1e-029
gb|AF527387.1| Populus tremuloides xylem-specific cellulose... 135 1e-029
gb|AY573571.1| Populus tremula x Populus tremuloides cellul... 135 1e-029
gb|BP924070.1|BP924070 BP924070 full-length enriched poplar... 127 3e-027
gb|AY573575.1| Populus tremula x Populus tremuloides cellul... 127 3e-027
gb|CA927446.1|CA927446 MTU6CR.P9.B04 Aspen root cDNA Librar... 125 1e-026
gb|BU823358.1|BU823358 UB51DPD11 Populus tremula cambium cD... 121 2e-025
gb|CF235713.1|CF235713 PtaJXT0026B7B0703 Poplar cDNA librar... 121 2e-025
gb|AJ779545.1|AJ779545 AJ779545 Populus euphratica root 3-6... 121 2e-025
gb|DT500162.1|DT500162 PX0011.BR_G15 PT-X-FL-A-1 Populus tr... 121 2e-025
gb|CF235321.1|CF235321 PtaJXT0021D9D0907 Poplar cDNA librar... 119 8e-025
gb|CV252351.1|CV252351 PX0011.B21_G15 PT-X-FL-A-1 Populus t... 119 8e-025
gb|AF081534.1|AF081534 Populus x canescens cellulose syntha... 119 8e-025
gb|AY095297.1| Populus tremuloides cellulose synthase (CesA... 119 8e-025
gb|CA931952.1|CA931952 MTU4TA.P25.A10 Aspen apex cDNA Libra... 115 1e-023
gb|AJ779945.1|AJ779945 AJ779945 Populus euphratica root 3-6... 115 1e-023
gb|CN523759.1|CN523759 GQ015M04.T3_A09 GQ015 Populus tricho... 113 5e-023
gb|CA926289.1|CA926289 MTU6CR.P13.C05 Aspen root cDNA Libra... 111 2e-022
gb|CF237106.1|CF237106 Ptajxtjxt2B1B0103 Poplar cDNA librar... 109 8e-022
gb|CV275712.1|CV275712 WS0177.B21_F22 PTxD-NR-A-8 Populus t... 109 8e-022
gb|CF232388.1|CF232388 PtaJXO0009H2H0216 Poplar cDNA librar... 105 1e-020
gb|AY573573.2| Populus tremula x Populus tremuloides cellul... 105 1e-020
gb|CA932078.1|CA932078 MTU4TA.P26.F03 Aspen apex cDNA Libra... 101 2e-019
gb|AJ778410.1|AJ778410 AJ778410 Populus euphratica cambium ... 101 2e-019
gb|CX169886.1|CX169886 G10_69-94_14.ab1 leaf inoculated wit... 101 2e-019
gb|AF417485.1| Populus tremuloides cellulose synthase (CesA... 101 2e-019
gb|AY573574.1| Populus tremula x Populus tremuloides cellul... 101 2e-019
gb|CA930801.1|CA930801 MTU2TA.P10.D08 Aspen apex cDNA Libra... 100 8e-019
gb|CF237222.1|CF237222 Ptajxtjxt3E10E1010 Poplar cDNA libra... 100 8e-019
gb|DV465848.1|DV465848 MTUNUL1.P43.H11 NUL Populus fremonti... 100 8e-019
gb|DV466748.1|DV466748 MTUNUL1.P9.G02 NUL Populus fremontii... 100 8e-019
gb|CK107258.1|CK107258 UB51DPD11.5pR Populus active cambium... 96 1e-017
gb|CK320732.1|CK320732 X9SP01b11 Populus stem seasonal libr... 96 1e-017
gb|AJ774508.1|AJ774508 AJ774508 Populus euphratica shoot 3-... 96 1e-017
gb|AJ775294.1|AJ775294 AJ775294 Populus euphratica shoot 3-... 96 1e-017
gb|DT509821.1|DT509821 WS02424.BR_N10 PTxD-ICC-N-A-14 Popul... 96 1e-017
gb|AF072131.1|AF072131 Populus tremuloides secondary xylem ... 96 1e-017
gb|DQ004570.1| Populus tomentosa cellulose synthase (cesa1)... 96 1e-017
gb|CN550567.1|CN550567 GQ0241.B3_I15 GQ024 Populus trichoca... 94 5e-017
gb|BI128217.1|BI128217 G072P74Y Populus cambium cDNA librar... 92 2e-016
gb|BU895617.1|BU895617 X028D07 Populus wood cDNA library Po... 92 2e-016
gb|CK102305.1|CK102305 G072P74.5pR Populus tension wood cDN... 92 2e-016
gb|AJ775532.1|AJ775532 AJ775532 Populus euphratica shoot 3-... 92 2e-016
gb|BP927588.1|BP927588 BP927588 full-length enriched poplar... 92 2e-016
gb|BI131187.1|BI131187 G116P69Y Populus cambium cDNA librar... 90 8e-016
gb|AY330166.1| Populus tremuloides CesA7A-like mRNA, partia... 90 8e-016
gb|AJ778476.1|AJ778476 AJ778476 Populus euphratica cambium ... 88 3e-015
gb|DT476519.1|DT476519 WS01229.B21_N17 PT-GT-FL-A-3 Populus... 88 3e-015
gb|BU897746.1|BU897746 X067G02 Populus wood cDNA library Po... 86 1e-014
gb|DT487943.1|DT487943 WS02535.B21_B11 PT-MB-N-A-15 Populus... 84 5e-014
gb|CV130875.1|CV130875 X9SP07b02 Populus stem seasonal libr... 80 7e-013
gb|CV234604.1|CV234604 WS01215.B21.1_I11 PT-GT-FL-A-3 Popul... 80 7e-013
gb|AI163338.1|AI163338 A040P09U Hybrid aspen plasmid librar... 76 1e-011
gb|BI127228.1|BI127228 G057P27Y Populus cambium cDNA librar... 76 1e-011
gb|CV273266.1|CV273266 WS01710.B21_E12 PTxD-NR-A-8 Populus ... 76 1e-011
gb|CV275252.1|CV275252 WS0175.B21_N18 PTxD-NR-A-8 Populus t... 76 1e-011
gb|CN524693.1|CN524693 GQ015M08.T3_H02 GQ015 Populus tricho... 74 4e-011
gb|DT469902.1|DT469902 WS01919.C21_E06 PT-DX-N-A-10 Populus... 74 4e-011
gb|CN518195.1|CN518195 GQ0092.B3_P04 GQ009 Populus trichoca... 72 2e-010
gb|AY330165.1| Populus tremuloides CesA5A-like mRNA, partia... 72 2e-010
gb|AI162302.1|AI162302 A015P47U Hybrid aspen plasmid librar... 68 3e-009
gb|CV228438.1|CV228438 WS01910.B21_B15 PT-DX-N-A-10 Populus... 68 3e-009
gb|BI138973.1|BI138973 F120P33Y Populus flower cDNA library... 66 1e-008
gb|CF236447.1|CF236447 PtaJXT2H2H0216 Poplar cDNA library f... 66 1e-008
gb|CK091716.1|CK091716 F120P33.3pR Populus flower cDNA libr... 66 1e-008
gb|CK101805.1|CK101805 F120P33.5pR Populus flower cDNA libr... 66 1e-008
gb|CK102299.1|CK102299 G072P58.5pR Populus tension wood cDN... 66 1e-008
gb|CK319325.1|CK319325 X9P09e02 Populus stem seasonal libra... 66 1e-008
gb|BI127743.1|BI127743 G065P23Y Populus cambium cDNA librar... 64 4e-008
gb|BI128874.1|BI128874 G082P82Y Populus cambium cDNA librar... 64 4e-008
gb|CA934196.1|CA934196 MTU3TS.P4.D08 Aspen stem cDNA Librar... 64 4e-008
gb|CF227502.1|CF227502 PtaD6G2G0214 Poplar cDNA library fro... 64 4e-008
gb|CF234438.1|CF234438 Ptajxojxo2F10F1012 Poplar cDNA libra... 64 4e-008
gb|CN519879.1|CN519879 GQ0108.B3_I06 GQ010 Populus trichoca... 64 4e-008
gb|CK087778.1|CK087778 A020P56.3pR Hybrid aspen plasmid lib... 62 2e-007
gb|DT475055.1|DT475055 WS0125.BR_N16 PT-GT-FL-A-3 Populus t... 62 2e-007
gb|DT475135.1|DT475135 WS0126.BR_C03 PT-GT-FL-A-3 Populus t... 62 2e-007
gb|CK107777.1|CK107777 G057P27 Populus tension wood cDNA li... 60 7e-007
gb|CK116718.1|CK116718 B016P26 Hybrid aspen plasmid library... 60 7e-007
gb|DT493580.1|DT493580 WS0111.BR_M17 PT-P-FL-A-2 Populus tr... 60 7e-007
gb|AI164546.1|AI164546 A064p24u Hybrid aspen plasmid librar... 58 3e-006
gb|BU894931.1|BU894931 X017A07 Populus wood cDNA library Po... 58 3e-006
gb|CF232524.1|CF232524 PtaJXO0011E3E0309 Poplar cDNA librar... 58 3e-006
gb|CF232837.1|CF232837 PtaJXO0016D5D0507 Poplar cDNA librar... 58 3e-006
gb|CF233341.1|CF233341 PtaJXO0022B5B0503 Poplar cDNA librar... 58 3e-006
gb|CF235304.1|CF235304 PtaJXT0021C1C0105 Poplar cDNA librar... 58 3e-006
gb|CK088642.1|CK088642 A064P24.3pR Hybrid aspen plasmid lib... 58 3e-006
gb|CK093129.1|CK093129 G109P08.3pR Populus tension wood cDN... 58 3e-006
gb|CK102126.1|CK102126 G065P23.5pR Populus tension wood cDN... 58 3e-006
gb|CN524029.1|CN524029 GQ015M07.T3_H06 GQ015 Populus tricho... 58 3e-006
gb|CN524680.1|CN524680 GQ015M13.T3_D10 GQ015 Populus tricho... 58 3e-006
gb|CK318639.1|CK318639 X9P01f01 Populus stem seasonal libra... 58 3e-006
gb|AJ771596.1|AJ771596 AJ771596 Populus euphratica root 3-6... 58 3e-006
gb|CV225435.1|CV225435 WS0161.B21_G07 PT-DX-A-7 Populus tri... 58 3e-006
gb|CV225888.1|CV225888 WS0162.B21_K19 PT-DX-A-7 Populus tri... 58 3e-006
gb|CV226017.1|CV226017 WS0163.B21_A20 PT-DX-A-7 Populus tri... 58 3e-006
gb|CV226195.1|CV226195 WS0163.B21_J02 PT-DX-A-7 Populus tri... 58 3e-006
gb|CV227633.1|CV227633 WS0167.B21_M03 PT-DX-A-7 Populus tri... 58 3e-006
gb|CV268970.1|CV268970 WS0206.B21_P09 PTxN-IB-N-A-11 Populu... 58 3e-006
gb|CV272431.1|CV272431 WS0157.B21_K08 PTxN-IB-A-6 Populus t... 58 3e-006
gb|BI132326.1|BI132326 G135P19Y Populus cambium cDNA librar... 56 1e-005
gb|BU897151.1|BU897151 X052C02 Populus wood cDNA library Po... 56 1e-005
gb|CF229283.1|CF229283 PtaXM0023E4E0410 Poplar cDNA library... 56 1e-005
gb|CF235639.1|CF235639 PtaJXT0025C12C1206 Poplar cDNA libra... 56 1e-005
gb|CK100621.1|CK100621 C057P32.5pR Populus strain T89 leave... 56 1e-005
gb|CN520055.1|CN520055 GQ0105.B3_H23 GQ010 Populus trichoca... 56 1e-005
gb|AJ777820.1|AJ777820 AJ777820 Populus euphratica root 3-6... 54 4e-005
gb|CF229078.1|CF229078 PtaXM0021A1A0101 Poplar cDNA library... 52 2e-004
gb|CF232701.1|CF232701 PtaJXO0014G1G0113 Poplar cDNA librar... 52 2e-004
gb|CF233490.1|CF233490 PtaJXO0024C12C1206 Poplar cDNA libra... 52 2e-004
gb|CK092703.1|CK092703 G092P25.3pR Populus tension wood cDN... 52 2e-004
gb|CK097446.1|CK097446 UB51DPD11.3pR Populus active cambium... 52 2e-004
gb|CK098592.1|CK098592 A020P56.5pR Hybrid aspen plasmid lib... 52 2e-004
gb|CK102806.1|CK102806 G092P25.5pR Populus tension wood cDN... 52 2e-004
gb|CK318831.1|CK318831 X9P03h01 Populus stem seasonal libra... 52 2e-004
gb|CV252662.1|CV252662 PX0015.B21_I21 PT-X-FL-A-1 Populus t... 52 2e-004
gb|CV262834.1|CV262834 WS0202.B21_K05 PTxN-IB-N-A-11 Populu... 52 2e-004
gb|CV282433.1|CV282433 WS0184.B21_J19 PTxD-IL-N-A-9 Populus... 52 2e-004
gb|DT493063.1|DT493063 WS02553.C21_E11 PT-MB-N-A-15 Populus... 52 2e-004
gb|DT500468.1|DT500468 PX0015.BR_I21 PT-X-FL-A-1 Populus tr... 52 2e-004
gb|BU815407.1|BU815407 N041C05 Populus bark cDNA library Po... 50 6e-004
gb|BU894361.1|BU894361 X008A10 Populus wood cDNA library Po... 50 6e-004
gb|BU894855.1|BU894855 X016A07 Populus wood cDNA library Po... 50 6e-004
gb|CV232087.1|CV232087 WS0196.B21_I06 PT-DX-N-A-10 Populus ... 50 6e-004
gb|BP923622.1|BP923622 BP923622 full-length enriched poplar... 50 6e-004
gb|DN495393.1|DN495393 N041C05.5pR Populus bark cDNA librar... 50 6e-004
gb|AI162632.1|AI162632 A020P56U Hybrid aspen plasmid librar... 48 0.003
gb|BU830997.1|BU830997 T015G10 Populus apical shoot cDNA li... 48 0.003
gb|BU897991.1|BU897991 X073A11 Populus wood cDNA library Po... 48 0.003
gb|CK117417.1|CK117417 B050P68 Hybrid aspen plasmid library... 48 0.003
gb|AJ778868.1|AJ778868 AJ778868 Populus euphratica cambium ... 48 0.003
gb|BU836690.1|BU836690 T089G02 Populus apical shoot cDNA li... 46 0.010
gb|CF216196.1|CF216196 PT1004 Hybrid aspen xylem up-regulat... 46 0.010
gb|CV268371.1|CV268371 WS0205.B21_E18 PTxN-IB-N-A-11 Populu... 46 0.010
gb|CV225999.1|CV225999 WS0162.B21_P23 PT-DX-A-7 Populus tri... 44 0.040
gb|CV231125.1|CV231125 WS0193.B21_J22 PT-DX-N-A-10 Populus ... 44 0.040
gb|DN485869.1|DN485869 N041C05.3pR Populus bark cDNA librar... 44 0.040
gb|BI131891.1|BI131891 G127P18Y Populus cambium cDNA librar... 42 0.16
gb|CB239511.1|CB239511 RSH12F10 two-month-old roots from cl... 42 0.16
gb|AY162183.1| Populus tremuloides cellulose synthase-like ... 42 0.16
>gb|AY196961.1| Populus tremuloides cellulose synthase 6 (CesA6) mRNA, complete cds
Length = 3773
Score = 345 bits (174), Expect = 8e-093
Identities = 525/642 (81%)
Strand = Plus / Minus
Query: 1938 gcaccactttggccagcagttgcaagttcttgatggtggcttctttgttttgggagcatc 1997
||||||||| ||| |||||||||| || || | |||||| ||||||||||| ||||||||
Sbjct: 2065 gcaccacttaggcaagcagttgcatgtcctcgttggtggtttctttgtttttggagcatc 2006
Query: 1998 gtagccatataatgcctgccttctgaagacacatccagtacccacataaattgggccctg 2057
|| ||||| | || | ||||||||| ||||||||||| || ||||| || || || ||
Sbjct: 2005 ataaccataaagcgcgtaccttctgaaaacacatccagtcccgacatatataggtccttg 1946
Query: 2058 gataccatccaaacctttcatgttgatatcgaaaaagacaacatttctgttagcatatcg 2117
|| ||||| |||||| |||| |||||||| || || ||| ||| | ||| ||||||||
Sbjct: 1945 aatgccatctaaacctctcatattgatatcaaagaatacagtattccggttggcatatcg 1886
Query: 2118 atcatggcgatcaatcccatcaaatctttgaggaaactgcacatagcaaactttctttcc 2177
|||| | ||||| |||||||| || || || ||||| |||||||| ||| |||| ||
Sbjct: 1885 atcactcctgtcaatgccatcaaacctctgtgggaactggacatagcacactctcttccc 1826
Query: 2178 aagcaaaggatccatcataaaacacattgcttcctttatagccttactattattgatata 2237
|||||| ||||||||||| |||||||||||||| | | ||||||||| |||||||| ||
Sbjct: 1825 aagcaatggatccatcatgaaacacattgcttctctaagagccttactgttattgatgta 1766
Query: 2238 gtgatcacaatccaagttcagcaaataaggagcattagttagtacagcagagactcggac 2297
||||||||||||||| |||| | ||| |||||||| ||||| || |||||||||| |||
Sbjct: 1765 gtgatcacaatccaaattcaaaagatatggagcatttgttagcacggcagagactctgac 1706
Query: 2298 caatgcattcatagcaccagccttcttgtgatggttgtagcctggccgtttttctcttga 2357
||| ||||||||||| |||||||| ||||| || || | || || | |||||||| ||
Sbjct: 1705 caaagcattcatagctccagcctttttgtggtgattaaatccaggtctcttttctctgga 1646
Query: 2358 aacataaaccaatcgaggcagctcatttccttccacatcatggccaccactttgaccaag 2417
|||||| |||| || || | || ||||| || ||||| || |||||||| |||||
Sbjct: 1645 aacatataccagacgtggtaattcgtttccatcagtgtcatgccctccactttggccaag 1586
Query: 2418 gaaaacctgaatcattccaggatgatcacggacattatttccgggccatggagttccatc 2477
||||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||
Sbjct: 1585 gaaaacctgaatcattccagggtgatcacggacattattcccaggccatggagtaccatc 1526
Query: 2478 ctgcattgtccatccttcctcaggaaccttttgggctttagcaaccaaggcattgattct 2537
||||||||||||||| || || || ||||| || || || |||||||| |||||||| |
Sbjct: 1525 ctgcattgtccatccatcttctgggaccttatgagccttggcaaccaaagcattgatccg 1466
Query: 2538 gaccttgaattcctcatactctctcttcattgctctccgttc 2579
| || || || ||||||||||||||||||||||| |||||
Sbjct: 1465 aattttaaactcttcatactctctcttcattgctcttcgttc 1424
Score = 165 bits (83), Expect = 2e-038
Identities = 245/299 (81%)
Strand = Plus / Minus
Query: 976 gtccatttgaatgtgtacagctctgagaactcctcgtcgtctccgcccttggatgtcaca 1035
||||| || |||| |||||||||||||||||| ||||||||||| || || || || |||
Sbjct: 3009 gtccacttaaatgcgtacagctctgagaactcgtcgtcgtctcctcctttagacgtaaca 2950
Query: 1036 gtgaagctcgtgtctacaccagctatgaccttgagtagtccctggaacacagcaaagaga 1095
|||||| |||| || |||||||||| ||||| | || ||||||||||| ||||| |||
Sbjct: 2949 gtgaagttcgtatcaacaccagctagaacctttaaaagcccctggaacactgcaaataga 2890
Query: 1096 tgtgaagacacgcctccaatgacccaaaactgctcgtttctccaccagtcatcgatgcct 1155
|||| || || ||||| || ||||| || || |||||||||||||| || || || ||
Sbjct: 2889 tgtgctgatacccctccgatcacccagaattgttcgtttctccaccactcgtcaatacca 2830
Query: 1156 acaccactccatctcatttccaggatgctcgtagcaaaaatgcagatgaaaagtgacatg 1215
|| |||||||||||||||||||| || || || || ||||| || |||||||| ||||
Sbjct: 2829 accccactccatctcatttccagtatacttgttgcgaaaatacaaatgaaaagagacaaa 2770
Query: 1216 aaccacaggctggcaacattgttaagctctggcgtgataaatttccctgtcagcaagca 1274
||||||||||||||| ||||| | ||||| || ||||| || ||||| || ||||||||
Sbjct: 2769 aaccacaggctggcagcattgctgagctccggagtgatgaacttcccagtaagcaagca 2711
Score = 137 bits (69), Expect = 4e-030
Identities = 102/113 (90%)
Strand = Plus / Minus
Query: 2674 cagaaaggaacccatttctttgcaaattcagatgtttcagacaatgcttcaaatgtcagc 2733
||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1329 cagaatgggacccatttctttgcaaattcagatgtttctgacaatgcctcaaatgtcagc 1270
Query: 2734 atggcagcaccatcatcagaaacgtagcacgaaaccttatcaactggataatc 2786
|| |||||||||||||||||||| || || |||||||| ||||| || |||||
Sbjct: 1269 atagcagcaccatcatcagaaacataacatgaaaccttgtcaacagggtaatc 1217
Score = 131 bits (66), Expect = 2e-028
Identities = 126/146 (86%)
Strand = Plus / Minus
Query: 2926 agataggtttccctctcgataggaaaccactttggaaactggtcaagaatccaagacatg 2985
||||| |||||||| || ||||| | ||||||||| || || ||||||||||| || | |
Sbjct: 1077 agataagtttccctgtcaatagggagccactttgggaattgatcaagaatccatgaaacg 1018
Query: 2986 gcaaaccaaatttcacagatcacagatatgagccataaagcaaatgcatcaggcaccgga 3045
||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |||
Sbjct: 1017 gcaaaccaaatctcacagatcacagatataagccataaagcaaatgcatcattcacagga 958
Query: 3046 tgcatcactcggtagtggaagaagaa 3071
|| | ||||| ||||||||||||||
Sbjct: 957 tgtgtgactcgatagtggaagaagaa 932
Score = 95.6 bits (48), Expect = 1e-017
Identities = 297/380 (78%)
Strand = Plus / Minus
Query: 1375 ccatacccataccagagagggcagtggttgctgaagaaaatttcaattgaaccaagagcc 1434
||||| |||||||| ||||| ||||| ||| || || || |||| ||| |||||||||
Sbjct: 2610 ccatatccataccaaagaggacagtgccggctcaaaaatatctcaactgatccaagagcc 2551
Query: 1435 caccgaagaacctggtgaagacgatcggaaagattgagaggtgcggaacctttgaaggcg 1494
|| | ||| |||||||| |||||||| |||||||| | || || |||||||| || ||
Sbjct: 2550 catctaaggacctggtgtagacgatcagaaagattaatgggcgccgaacctttaaatgct 2491
Query: 1495 gcccgtttaggtatgcagtaaattgaccgccaaccatggcagtgcatcttaaacccagta 1554
| || ||| || ||||| ||||| | ||| ||||| |||||||| ||||| || ||
Sbjct: 2490 ggcctagaaggaatacagtatattgatctccatccatgacagtgcattttaaagcctgtc 2431
Query: 1555 agaatatcttctgtgactgatccataaatccaaccaatatcttttccccagcctgttttg 1614
| ||||| ||||| || || ||||||||||| || | ||||| ||||| |||||||
Sbjct: 2430 aatatatcctctgtaacagaaccataaatccaccctacctctttgccccattctgtttta 2371
Query: 1615 tcttcatatccacaactgatgacatgtatagcttccttcagaagagaagctggactggca 1674
|||||||| ||||| || |||||||| || ||||| || || ||||| || || ||||||
Sbjct: 2370 tcttcatagccacagctaatgacatggatggcttctttaagcagagacgcagggctggca 2311
Query: 1675 ctcttcagggttccaccattctcaagaagtgtggatgcaacaaaaactgaagactggcca 1734
|| ||||| | ||||||| ||| || || || || || ||||| || ||||| || |||
Sbjct: 2310 cttttcagcgagccaccatcctctagcagggtagacgctacaaacacagaagattgtcca 2251
Query: 1735 aatttcttttccaacttctg 1754
|| ||||||||||| |||||
Sbjct: 2250 aacttcttttccaatttctg 2231
Score = 77.8 bits (39), Expect = 3e-012
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 3238 tcctgcttctgcttccagctctccatcctctccttccatgctacgctcccgtagccatat 3297
||||| || |||||||||||||||||||||||||||||||| | || || || |||||
Sbjct: 765 tcctgtttttgcttccagctctccatcctctccttccatgcaatacttccatatccataa 706
Query: 3298 gcggcgagatccttggaagggtccatagacctcggttgcacaggaag 3344
|| || | ||||||||||| ||||| || || ||||||||||||||
Sbjct: 705 gcagccaagtccttggaaggatccatggatcttggttgcacaggaag 659
Score = 63.9 bits (32), Expect = 4e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 3733 atggggaaggcgcactcgttgcaggccacgaaaggctccccgtc 3776
||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 258 atggggaaggcgcactcgttgcaggccacaaaaacctccccgtc 215
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 817 aggaacgggtaaagatggacgatcacccaaaatgcaaagaagagcttcccgaacaggggg 876
||||| || ||||| || || |||||||| ||||||||||| ||||| || ||||| ||
Sbjct: 3168 aggaaaggataaaggtgaactatcacccagaatgcaaagaaaagcttaccaaacagaggc 3109
Query: 877 ccccatgattcata 890
|||||||| |||||
Sbjct: 3108 ccccatgactcata 3095
>gb|AY055724.2| Populus tremuloides cellulose synthase (CesA5) mRNA, complete cds
Length = 3532
Score = 190 bits (96), Expect = 3e-046
Identities = 579/740 (78%)
Strand = Plus / Minus
Query: 2023 aagacacatccagtacccacataaattgggccctggataccatccaaacctttcatgttg 2082
||||||||||||||||||||||| | || || || |||||||||| ||| ||| |||
Sbjct: 2130 aagacacatccagtacccacatagacaggtccttgaataccatccagacccctcaagttt 2071
Query: 2083 atatcgaaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaat 2142
||||| || || ||| ||| | || ||||||||||||| | ||||| |||||||||
Sbjct: 2070 atatcaaagaatacagtattgcgattggcatatcgatcattcctgtcaatgccatcaaat 2011
Query: 2143 ctttgaggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacac 2202
||||| |||||||| |||||||| || | || ||||| ||||||| |||| ||||||
Sbjct: 2010 ctttgtggaaactgaacatagcagacatgtttcccaaggttaggatccttcatgaaacac 1951
Query: 2203 attgcttcctttatagccttactattattgatatagtgatcacaatccaagttcagcaaa 2262
|| ||||| | | |||||| ||| | || || |||||||||||||| | |||| |||
Sbjct: 1950 atagcttctctcaaagccttgctaatgtttatgtagtgatcacaatcaagattcaacaag 1891
Query: 2263 taaggagcattagttagtacagcagagactcggaccaatgcattcatagcaccagccttc 2322
|||| |||||||||| || || || || || || | || |||||| |||||||| |||
Sbjct: 1890 aaaggcccattagttagcacggctgatacacgaacaagtgaattcatggcaccagctttc 1831
Query: 2323 ttgtgatggttgtagcctggccgtttttctcttgaaacataaaccaatcgaggcagctca 2382
||||| || | | |||| || || ||||| | ||||||||||| || || || ||||||
Sbjct: 1830 ttgtggtgctggaagccaggacgcttttcacgagaaacataaactaaccgcggaagctca 1771
Query: 2383 tttccttccacatcatggccaccactttgaccaaggaaaacctgaatcattccaggatga 2442
|| || || |||| | || |||||||| || | |||||||||||||||||| |||||
Sbjct: 1770 ttaccatcagaatcaagccctccactttggcccaagaaaacctgaatcattcctggatgg 1711
Query: 2443 tcacggacattatttccgggccatggagttccatcctgcattgtccatccttcctcagga 2502
|| | | |||||||| |||||||| || ||||| ||||| |||||||||| |||||
Sbjct: 1710 tctctggtgttatttccaggccatggggtcccatcttgcataatccatccttcttcaggc 1651
Query: 2503 accttttgggctttagcaaccaaggcattgattctgaccttgaattcctcatactctctc 2562
|||||||| || || ||||| | ||||||| | | || ||||| ||||| ||||||
Sbjct: 1650 accttttgcgccttggcaacaagcccattgatacgaattttaaattcttcatattctctc 1591
Query: 2563 ttcattgctctccgttctctaacaaagtttggcgccaccttgtctttcaggtagtctatc 2622
||||| ||||| || ||| | ||||| |||| ||| || || |||| |||||| |||
Sbjct: 1590 ttcatagctctacggtctttgacaaaagatggctgcactttatccttcaagtagtcaatc 1531
Query: 2623 ttctgttggaagtaccactctggagcacgaggctcaaggctatatcttttgcagaaagga 2682
|| ||| |||||||| |||||||| |||||||||| ||| || | |||||||| ||
Sbjct: 1530 ttttgtgcaaagtaccattctggagcccgaggctcaatgctgtacttcttgcagaagggc 1471
Query: 2683 acccatttctttgcaaattcagatgtttcagacaatgcttcaaatgtcagcatggcagca 2742
||||||||| | | ||| || || || |||||||| ||||||||||||| ||| ||||||
Sbjct: 1470 acccatttcctggaaaactctgaagtctcagacaaagcttcaaatgtcaacattgcagca 1411
Query: 2743 ccatcatcagaaacgtagca 2762
||||||||||| || |||||
Sbjct: 1410 ccatcatcagagacatagca 1391
Score = 135 bits (68), Expect = 1e-029
Identities = 203/248 (81%)
Strand = Plus / Minus
Query: 1413 aatttcaattgaaccaagagcccaccgaagaacctggtgaagacgatcggaaagattgag 1472
|||||||| ||||| |||||||| ||||| || |||| |||||||| |||||||| |
Sbjct: 2716 aatttcaacagaacccagagcccatcgaagcacttggttcagacgatcagaaagattaat 2657
Query: 1473 aggtgcggaacctttgaaggcggcccgtttaggtatgcagtaaattgaccgccaaccatg 1532
||| || || ||||| ||||| | || || || || || ||||||||||||||||| |
Sbjct: 2656 aggagcagaccctttaaaggctgggcgcttgggcatacaataaattgaccgccaaccccg 2597
Query: 1533 gcagtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaat 1592
| |||||||||||||||||||||||||||||||| || || ||||| ||||| |||||
Sbjct: 2596 ggcatgcatcttaaacccagtaagaatatcttctgtaacagaaccatagatccatccaat 2537
Query: 1593 atcttttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttcctt 1652
|| |||||| |||||||||| ||||| |||||||| |||||||| |||||||| ||
Sbjct: 2536 ctcagatccccaatctgttttgtcctcatacccacaactaatgacatgaatagcttcttt 2477
Query: 1653 cagaagag 1660
|||||||
Sbjct: 2476 aagaagag 2469
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 1114 atgacccaaaactgctcgtttctccaccagtcatcgatgcctacaccactccatctcatt 1173
|||||||||||||| || || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 3015 atgacccaaaactgttcattcctccaccactcatcaatcccaacaccactccacctcatc 2956
Query: 1174 tcca 1177
||||
Sbjct: 2955 tcca 2952
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 1687 ccaccattctcaagaagtgtggatgcaacaaaaactgaagactggccaaa 1736
||||||||||| | ||||||||| ||||||||||| | |||||||||||
Sbjct: 2442 ccaccattctccataagtgtggaagcaacaaaaacagctgactggccaaa 2393
>gb|CV244615.1|CV244615 WS0255.B21_C09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0255_C09
3', mRNA sequence
Length = 402
Score = 182 bits (92), Expect = 7e-044
Identities = 263/320 (82%)
Strand = Plus / Minus
Query: 1938 gcaccactttggccagcagttgcaagttcttgatggtggcttctttgttttgggagcatc 1997
||||||||| ||| |||||||||| || || | |||||| ||||||||||| ||||||||
Sbjct: 320 gcaccacttaggcaagcagttgcatgtcctcgttggtggtttctttgtttttggagcatc 261
Query: 1998 gtagccatataatgcctgccttctgaagacacatccagtacccacataaattgggccctg 2057
|| ||||| | || ||||||||||| ||||||||||| || ||||| || || || ||
Sbjct: 260 ataaccataaagcgcgtgccttctgaaaacacatccagtcccgacatatataggtccttg 201
Query: 2058 gataccatccaaacctttcatgttgatatcgaaaaagacaacatttctgttagcatatcg 2117
|| |||||||||||| |||| |||||||| || || ||| || | ||| ||||||||
Sbjct: 200 aatgccatccaaacctctcatattgatatcaaagaatacagtgttccggttggcatatcg 141
Query: 2118 atcatggcgatcaatcccatcaaatctttgaggaaactgcacatagcaaactttctttcc 2177
|||| | ||||| |||||||| || || || ||||| |||||||| ||| |||||||
Sbjct: 140 atcactcctgtcaatgccatcaaacctctgtgggaactggacatagcacactctctttcc 81
Query: 2178 aagcaaaggatccatcataaaacacattgcttcctttatagccttactattattgatata 2237
||| || ||||||||||| |||||||||||||| | | ||||||||| |||||||| ||
Sbjct: 80 aagtaatggatccatcatgaaacacattgcttctctaagagccttactgttattgatgta 21
Query: 2238 gtgatcacaatccaagttca 2257
||||||||||||||| ||||
Sbjct: 20 gtgatcacaatccaaattca 1
>gb|DT489371.1|DT489371 WS02542.B21_A18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02542_A18 3', mRNA sequence
Length = 402
Score = 182 bits (92), Expect = 7e-044
Identities = 263/320 (82%)
Strand = Plus / Minus
Query: 1938 gcaccactttggccagcagttgcaagttcttgatggtggcttctttgttttgggagcatc 1997
||||||||| ||| |||||||||| || || | |||||| ||||||||||| ||||||||
Sbjct: 320 gcaccacttaggcaagcagttgcatgtcctcgttggtggtttctttgtttttggagcatc 261
Query: 1998 gtagccatataatgcctgccttctgaagacacatccagtacccacataaattgggccctg 2057
|| ||||| | || ||||||||||| ||||||||||| || ||||| || || || ||
Sbjct: 260 ataaccataaagcgcgtgccttctgaaaacacatccagtcccgacatatataggtccttg 201
Query: 2058 gataccatccaaacctttcatgttgatatcgaaaaagacaacatttctgttagcatatcg 2117
|| |||||||||||| |||| |||||||| || || ||| || | ||| ||||||||
Sbjct: 200 aatgccatccaaacctctcatattgatatcaaagaatacagtgttccggttggcatatcg 141
Query: 2118 atcatggcgatcaatcccatcaaatctttgaggaaactgcacatagcaaactttctttcc 2177
|||| | ||||| |||||||| || || || ||||| |||||||| ||| |||||||
Sbjct: 140 atcactcctgtcaatgccatcaaacctctgtgggaactggacatagcacactctctttcc 81
Query: 2178 aagcaaaggatccatcataaaacacattgcttcctttatagccttactattattgatata 2237
||| || ||||||||||| |||||||||||||| | | ||||||||| |||||||| ||
Sbjct: 80 aagtaatggatccatcatgaaacacattgcttctctaagagccttactgttattgatgta 21
Query: 2238 gtgatcacaatccaagttca 2257
||||||||||||||| ||||
Sbjct: 20 gtgatcacaatccaaattca 1
>gb|CA926496.1|CA926496 MTU6CR.P15.F11 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 294
Score = 176 bits (89), Expect = 4e-042
Identities = 233/281 (82%)
Strand = Plus / Minus
Query: 994 agctctgagaactcctcgtcgtctccgcccttggatgtcacagtgaagctcgtgtctaca 1053
|||||||||||||| ||||||||||| || || || || ||||||||| |||| || |||
Sbjct: 294 agctctgagaactcatcgtcgtctcctcctttagacgtaacagtgaagttcgtatcaaca 235
Query: 1054 ccagctatgaccttgagtagtccctggaacacagcaaagagatgtgaagacacgcctcca 1113
||||||| ||||| | || ||||||||||| ||||| ||||||| || || |||||
Sbjct: 234 ccagctagaacctttaaaagcccctggaacactgcaaatagatgtgctgatacccctccg 175
Query: 1114 atgacccaaaactgctcgtttctccaccagtcatcgatgcctacaccactccatctcatt 1173
|| |||||||| ||||||||||||||||| || || || || || |||||||||||||||
Sbjct: 174 atcacccaaaattgctcgtttctccaccactcgtcaataccaaccccactccatctcatt 115
Query: 1174 tccaggatgctcgtagcaaaaatgcagatgaaaagtgacatgaaccacaggctggcaaca 1233
||||| || || || || ||||| || |||||||| |||| ||||||||||||||| ||
Sbjct: 114 tccagtatacttgttgcgaaaatacaaatgaaaagagacaaaaaccacaggctggcagca 55
Query: 1234 ttgttaagctctggcgtgataaatttccctgtcagcaagca 1274
||| | ||||| || |||||||| ||||| || ||||||||
Sbjct: 54 ttgctgagctccggagtgataaacttcccggtaagcaagca 14
>gb|CA926817.1|CA926817 MTU6CR.P1.E04 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 294
Score = 176 bits (89), Expect = 4e-042
Identities = 233/281 (82%)
Strand = Plus / Plus
Query: 994 agctctgagaactcctcgtcgtctccgcccttggatgtcacagtgaagctcgtgtctaca 1053
|||||||||||||| ||||||||||| || || || || ||||||||| |||| || |||
Sbjct: 1 agctctgagaactcatcgtcgtctcctcctttagacgtaacagtgaagttcgtatcaaca 60
Query: 1054 ccagctatgaccttgagtagtccctggaacacagcaaagagatgtgaagacacgcctcca 1113
||||||| ||||| | || ||||||||||| ||||| ||||||| || || |||||
Sbjct: 61 ccagctagaacctttaaaagcccctggaacactgcaaatagatgtgctgatacccctccg 120
Query: 1114 atgacccaaaactgctcgtttctccaccagtcatcgatgcctacaccactccatctcatt 1173
|| |||||||| ||||||||||||||||| || || || || || |||||||||||||||
Sbjct: 121 atcacccaaaattgctcgtttctccaccactcgtcaataccaaccccactccatctcatt 180
Query: 1174 tccaggatgctcgtagcaaaaatgcagatgaaaagtgacatgaaccacaggctggcaaca 1233
||||| || || || || ||||| || |||||||| |||| ||||||||||||||| ||
Sbjct: 181 tccagtatacttgttgcgaaaatacaaatgaaaagagacaaaaaccacaggctggcagca 240
Query: 1234 ttgttaagctctggcgtgataaatttccctgtcagcaagca 1274
||| | ||||| || |||||||| ||||| || ||||||||
Sbjct: 241 ttgctgagctccggagtgataaacttcccggtaagcaagca 281
>gb|CN520281.1|CN520281 GQ0105.B3_A14 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_A14 5', mRNA sequence
Length = 783
Score = 151 bits (76), Expect = 2e-034
Identities = 277/344 (80%)
Strand = Plus / Minus
Query: 1990 ggagcatcgtagccatataatgcctgccttctgaagacacatccagtacccacataaatt 2049
|||| ||| |||||||| || | |||||| ||||||||||||||||||| ||||| | |
Sbjct: 638 ggaggatcatagccatacaaggactgcctgttgaagacacatccagtaccaacatatact 579
Query: 2050 gggccctggataccatccaaacctttcatgttgatatcgaaaaagacaacatttctgtta 2109
|| || || | ||||| | |||||||||||| ||||| || || |||||||| | |||
Sbjct: 578 ggcccttgaaccccatctagacctttcatgtttatatcaaagaacacaacattgcgatta 519
Query: 2110 gcatatcgatcatggcgatcaatcccatcaaatctttgaggaaactgcacatagcaaact 2169
||||||| ||||||||||||||| |||||||| || || |||||||| |||||||| |
Sbjct: 518 gcatatctatcatggcgatcaataccatcaaacctctgcggaaactggacatagcagagc 459
Query: 2170 ttctttccaagcaaaggatccatcataaaacacattgcttcctttatagccttactatta 2229
||||| ||||| |||||||||| ||| ||||| ||||| ||| |||||| || |||
Sbjct: 458 ttcttcccaagttggggatccatcaaaaagcacatggcttctcttacagccttgctgtta 399
Query: 2230 ttgatatagtgatcacaatccaagttcagcaaataaggagcattagttagtacagcagag 2289
||||| || || ||||||||||| |||| || | |||| ||||| || || || || |||
Sbjct: 398 ttgatgtaatggtcacaatccaaattcaacataaaaggtgcattggtgagcactgctgag 339
Query: 2290 actcggaccaatgcattcatagcaccagccttcttgtgatggtt 2333
||||| | || |||||||| ||||| || |||||||| |||||
Sbjct: 338 actcgaatcagagcattcatggcacctgctttcttgtggtggtt 295
>gb|DT473511.1|DT473511 WS01229.BR_N17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_N17 5', mRNA sequence
Length = 912
Score = 149 bits (75), Expect = 9e-034
Identities = 216/263 (82%)
Strand = Plus / Minus
Query: 2599 accttgtctttcaggtagtctatcttctgttggaagtaccactctggagcacgaggctca 2658
||||||||||| | |||||| ||||| || ||||||||| |||||||| || ||||||
Sbjct: 900 accttgtcttttaagtagtcaatcttttgagcgaagtaccattctggagctcgcggctca 841
Query: 2659 aggctatatcttttgcagaaaggaacccatttctttgcaaattcagatgtttcagacaat 2718
| |||| | |||||||||||||||||||| | ||||||||||| |||||||| |
Sbjct: 840 atatcatatttcttgcagaaaggaacccattttctagcaaattcagacgtttcagatatg 781
Query: 2719 gcttcaaatgtcagcatggcagcaccatcatcagaaacgtagcacgaaaccttatcaact 2778
||||||||||||| ||| ||||| |||||||| ||||| ||||| || || || || |||
Sbjct: 780 gcttcaaatgtcaacatagcagctccatcatctgaaacatagcaagagactttgtcgact 721
Query: 2779 ggataatccaccgaaaggatagatagaacagtattagcagtgaccaatggaggttccttc 2838
|| ||||| || | ||| |||||||| |||||||| || ||||||| ||||||||||||
Sbjct: 720 gggtaatctactgcaagaatagatagcacagtattggctgtgaccagtggaggttccttt 661
Query: 2839 aagggatcaaccgtactgacaaa 2861
|| || || || |||||||||||
Sbjct: 660 aaagggtcgactgtactgacaaa 638
>gb|AY162181.1| Populus tremuloides cellulose synthase (CesA4) mRNA, complete cds
Length = 3640
Score = 145 bits (73), Expect = 1e-032
Identities = 307/385 (79%)
Strand = Plus / Minus
Query: 2188 tccatcataaaacacattgcttcctttatagccttactattattgatatagtgatcacaa 2247
|||||||| |||||||| ||||| || | ||| || || ||||||| ||||||||||||
Sbjct: 1784 tccatcatgaaacacatggcttctttaagagctttgctgttattgaagtagtgatcacaa 1725
Query: 2248 tccaagttcagcaaataaggagcattagttagtacagcagagactcggaccaatgcattc 2307
|| | |||||| | ||| | | |||| || |||||||| || ||||| | || |||||||
Sbjct: 1724 tcgacgttcagaagataggcaccattggtcagtacagctgaaactcgaatcagtgcattc 1665
Query: 2308 atagcaccagccttcttgtgatggttgtagcctggccgtttttctcttgaaacataaacc 2367
|| || || || ||||||||||| | | | || || | ||||| | |||||||| ||
Sbjct: 1664 attgctccggctttcttgtgatgctggaatccaggtctcttttcacgagaaacatataca 1605
Query: 2368 aatcgaggcagctcatttccttccacatcatggccaccactttgaccaaggaaaacctga 2427
| ||||| ||||||||||| ||| ||| | || ||||| ||||| | ||| ||||||
Sbjct: 1604 agacgaggtagctcatttccatccgtatcgagccccccactgtgacctaagaacacctga 1545
Query: 2428 atcattccaggatgatcacggacattatttccgggccatggagttccatcctgcattgtc 2487
|||||||| || ||||| | | ||||||||| |||||||||||||||||||||||||||
Sbjct: 1544 atcattcctgggtgatccctgggattatttccaggccatggagttccatcctgcattgtc 1485
Query: 2488 catccttcctcaggaaccttttgggctttagcaaccaaggcattgattctgaccttgaat 2547
|| ||||| || || | |||||| ||||| ||||| | |||||||| | |||||||||
Sbjct: 1484 caaccttcttctggcatcttttgagctttggcaacaagagcattgatccgcaccttgaat 1425
Query: 2548 tcctcatactctctcttcattgctc 2572
|| ||||| ||||| ||||||||||
Sbjct: 1424 tcttcatattctcttttcattgctc 1400
Score = 87.7 bits (44), Expect = 3e-015
Identities = 104/124 (83%)
Strand = Plus / Minus
Query: 1537 tgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatct 1596
||||||||||||||||| | |||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 2402 tgcatcttaaacccagtcaaaatatcttctgtaacagacccatagatccatccaatctct 2343
Query: 1597 tttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttcaga 1656
|| |||| | || ||||||||||||||||| || || ||||| |||||||| |||| |
Sbjct: 2342 ttggcccattcagtcttgtcttcatatccacagctaataacatggatagcttctttcaaa 2283
Query: 1657 agag 1660
||||
Sbjct: 2282 agag 2279
Score = 60.0 bits (30), Expect = 7e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 2943 gataggaaaccactttggaaactggtcaagaatccaagacatggcaaaccaaatttcaca 3002
|||||| | ||| ||||||||||| || |||| ||| |||| |||||||||||| |||||
Sbjct: 1029 gataggcatccattttggaaactgatccagaagccaggacaaggcaaaccaaatctcaca 970
Query: 3003 gatcacagat 3012
||| ||||||
Sbjct: 969 gataacagat 960
Score = 52.0 bits (26), Expect = 2e-004
Identities = 134/170 (78%)
Strand = Plus / Minus
Query: 715 gggtcgatccggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaatg 774
|||||||| || ||||| |||| ||||| || || || ||||| || |||||||| |||
Sbjct: 3227 gggtcgatgcgcacccatagcaaggagaaaatggaggcaaggagaatagaccagacgatg 3168
Query: 775 acaatcgttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatgg 834
||||| |||||||| | || |||| || | || |||||||||||| || || | ||||
Sbjct: 3167 acaattgttggcgtacgattttgccgacccagcaaacccttgaggaaaggatacaaatgg 3108
Query: 835 acgatcacccaaaatgcaaagaagagcttcccgaacagggggccccatga 884
| || ||||||| |||||||||||||| || || || || ||||||||
Sbjct: 3107 gcaatgacccaaatagcaaagaagagcttgccaaagagaggaccccatga 3058
Score = 48.1 bits (24), Expect = 0.003
Identities = 96/120 (80%)
Strand = Plus / Minus
Query: 1111 ccaatgacccaaaactgctcgtttctccaccagtcatcgatgcctacaccactccatctc 1170
||||||||||| || || || || ||||||||||| || || || || |||||||||||
Sbjct: 2828 ccaatgacccagaattgttcattcctccaccagtcttcaataccaactccactccatcta 2769
Query: 1171 atttccaggatgctcgtagcaaaaatgcagatgaaaagtgacatgaaccacaggctggca 1230
| || || || | |||||||||||| |||||||||| |||||||||| |||||||
Sbjct: 2768 agctcaagtattccagtagcaaaaatggagatgaaaagcagaatgaaccacatgctggca 2709
>gb|AY573572.1| Populus tremula x Populus tremuloides cellulose synthase (CesA2)
mRNA, complete cds
Length = 3991
Score = 145 bits (73), Expect = 1e-032
Identities = 166/197 (84%)
Strand = Plus / Minus
Query: 2371 cgaggcagctcatttccttccacatcatggccaccactttgaccaaggaaaacctgaatc 2430
||||||| |||||||| || |||||||| | ||| | ||||||||||| |||||||||
Sbjct: 2052 cgaggcaattcatttccctcaacatcatgaactccattatgaccaaggaagacctgaatc 1993
Query: 2431 attccaggatgatcacggacattatttccgggccatggagttccatcctgcattgtccat 2490
|||||||||||||| | ||||||||| || ||||||||||| |||||||||||||||||
Sbjct: 1992 attccaggatgatctctgacattattccctggccatggagtgccatcctgcattgtccaa 1933
Query: 2491 ccttcctcaggaaccttttgggctttagcaaccaaggcattgattctgaccttgaattcc 2550
|| |||||||||||||| || || | ||||| || |||| |||| || ||||| ||
Sbjct: 1932 ccatcctcaggaaccttctgtgccgtggcaactaacccatttattcgaactttgaactct 1873
Query: 2551 tcatactctctcttcat 2567
|||||||||||||||||
Sbjct: 1872 tcatactctctcttcat 1856
Score = 109 bits (55), Expect = 8e-022
Identities = 238/299 (79%)
Strand = Plus / Minus
Query: 2029 catccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatcg 2088
||||||||||| ||||| || || || || || |||||||| |||||||| ||||||||
Sbjct: 2394 catccagtaccaacatatataggaccttgtatgccatccaatcctttcatattgatatca 2335
Query: 2089 aaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttga 2148
|| || |||||||| | || | |||| |||||| |||||||||||||||||||||||
Sbjct: 2334 aagaatacaacattacgatttgagtatctatcatgacgatcaatcccatcaaatctttgc 2275
Query: 2149 ggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacacattgct 2208
||||| || ||||| |||| |||||||||| || |||||||| || ||||| |||
Sbjct: 2274 ggaaattgaacataacaaattttctttccagatgttgggtccatcatgaagcacatggct 2215
Query: 2209 tcctttatagccttactattattgatatagtgatcacaatccaagttcagcaaataagga 2268
|| | ||||||||||| || ||||| ||||||||||| | ||||||| ||||||
Sbjct: 2214 tcgcgaagtgccttactattgtttatataatgatcacaatcaacattcagcatgtaagga 2155
Query: 2269 gcattagttagtacagcagagactcggaccaatgcattcatagcaccagccttcttgtg 2327
||||| |||| | |||||||| | ||||| | ||||||||| ||||| ||||||||
Sbjct: 2154 gcatttgttatgattgcagagaccctcaccaaagaattcatagccccagctttcttgtg 2096
Score = 95.6 bits (48), Expect = 1e-017
Identities = 126/152 (82%)
Strand = Plus / Minus
Query: 2635 taccactctggagcacgaggctcaaggctatatcttttgcagaaaggaacccatttcttt 2694
||||| |||||||| ||||| |||| ||| | || ||||||||||| ||||| || ||
Sbjct: 1788 taccattctggagctcgaggttcaatgctgaacctcttgcagaaagggacccactttctt 1729
Query: 2695 gcaaattcagatgtttcagacaatgcttcaaatgtcagcatggcagcaccatcatcagaa 2754
|||||||||||||| ||||| | |||||||| || |||||||||||||||||||| ||
Sbjct: 1728 gcaaattcagatgtctcagagatagcttcaaaagtaagcatggcagcaccatcatctgag 1669
Query: 2755 acgtagcacgaaaccttatcaactggataatc 2786
|| ||||| | ||| || || |||||||||||
Sbjct: 1668 acatagcatgcaactttttcgactggataatc 1637
Score = 81.8 bits (41), Expect = 2e-013
Identities = 110/133 (82%)
Strand = Plus / Minus
Query: 1522 cgccaaccatggcagtgcatcttaaacccagtaagaatatcttctgtgactgatccataa 1581
||||| |||||||| |||||||| || ||||| | ||||| || || || || ||||||
Sbjct: 2877 cgccagccatggcaatgcatcttgaagccagttaatatatcctcagtaacagagccataa 2818
Query: 1582 atccaaccaatatcttttccccagcctgttttgtcttcatatccacaactgatgacatgt 1641
||||| ||||| ||||||||||| | ||||| |||||||| |||||||| ||||||||
Sbjct: 2817 atccacccaatctcttttccccattcagttttatcttcataaccacaactaatgacatga 2758
Query: 1642 atagcttccttca 1654
|| ||||| ||||
Sbjct: 2757 atggcttctttca 2745
Score = 67.9 bits (34), Expect = 3e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 1111 ccaatgacccaaaactgctcgtttctccaccagtcatcgatgcctacacc 1160
||||||||||| |||||||| |||||||||||||||| |||||| |||||
Sbjct: 3288 ccaatgacccagaactgctcatttctccaccagtcatggatgccaacacc 3239
Score = 61.9 bits (31), Expect = 2e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 811 cccttgaggaacgggtaaagatggacgatcacccaaaatgcaaagaagagcttcccgaa 869
|||||||||||||||||||| ||||| || ||||| || |||||||| ||||| |||||
Sbjct: 3588 cccttgaggaacgggtaaaggtggacaattacccacaacgcaaagaatagcttaccgaa 3530
Score = 50.1 bits (25), Expect = 6e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 2926 agataggtttccctctcgataggaaaccactttggaaactggtcaagaatccaagacatg 2985
||||| ||||| | ||| || ||| |||||||||||||||| || | |||||||| | |
Sbjct: 1497 agatatgtttctcgctcaattggataccactttggaaactgatctaatatccaagaaacg 1438
Query: 2986 gcaaaccaaatttcaca 3002
|||||||| ||||||||
Sbjct: 1437 gcaaaccatatttcaca 1421
>gb|AY162180.1| Populus tremuloides cellulose synthase (CesA7) mRNA, complete cds
Length = 3809
Score = 143 bits (72), Expect = 6e-032
Identities = 177/212 (83%)
Strand = Plus / Minus
Query: 2356 gaaacataaaccaatcgaggcagctcatttccttccacatcatggccaccactttgacca 2415
||||||||||||| ||||| | ||| ||||||||| ||| | | ||||||||||||
Sbjct: 1786 gaaacataaaccagacgaggtaactcgcatccttccacgtcacgtactccactttgacca 1727
Query: 2416 aggaaaacctgaatcattccaggatgatcacggacattatttccgggccatggagttcca 2475
||||||||||||||||| |||||||| || || ||||| ||||| |||||||||||||||
Sbjct: 1726 aggaaaacctgaatcatgccaggatggtctcgtacattgtttccaggccatggagttcca 1667
Query: 2476 tcctgcattgtccatccttcctcaggaaccttttgggctttagcaaccaaggcattgatt 2535
|| ||||||||||| || || || ||||||||||| ||| | | |||||| |||| ||
Sbjct: 1666 tcttgcattgtccaaccatcttccggaaccttttgtgctgtggaaaccaacccatttatc 1607
Query: 2536 ctgaccttgaattcctcatactctctcttcat 2567
|| || |||||||| ||||| |||||||||||
Sbjct: 1606 ctcactttgaattcttcatattctctcttcat 1575
Score = 117 bits (59), Expect = 3e-024
Identities = 257/323 (79%)
Strand = Plus / Minus
Query: 1312 gatgtccaagggtatacgatggagttaatgtacgaaaacctttccaggaactttagtcca 1371
||||||||||| || || | ||||| ||||| ||||| | ||||| |||| | ||||
Sbjct: 2803 gatgtccaaggatacacaactgagtttatgtaggaaaatcgttccaaccacttcaatcca 2744
Query: 1372 ccaccatacccataccagagagggcagtggttgctgaagaaaatttcaattgaaccaaga 1431
|| ||||| |||||||| | || ||||| | ||||||||||| |||| ||||| ||
Sbjct: 2743 cccccataaccataccaaattggacagtgtctactgaagaaaatctcaacagaaccgagg 2684
Query: 1432 gcccaccgaagaacctggtgaagacgatcggaaagattgagaggtgcggaacctttgaag 1491
|||||||||||||||||||| |||||||| || || || | || || || || |||||
Sbjct: 2683 gcccaccgaagaacctggtgtagacgatctgacaggttaattggagctgaccccttgaat 2624
Query: 1492 gcggcccgtttaggtatgcagtaaattgaccgccaaccatggcagtgcatcttaaaccca 1551
|| | ||| |||||||||||||||| |||||||| ||||||||||||||||| || ||
Sbjct: 2623 gcaggccgcttaggtatgcagtaaacagaccgccatccatggcagtgcatcttgaatcct 2564
Query: 1552 gtaagaatatcttctgtgactgatccataaatccaaccaatatcttttccccagcctgtt 1611
|| | ||||| ||||| || || ||||| ||||| |||| || |||||||| |||||
Sbjct: 2563 gtcaagatatcctctgtaacagagccatatatccagccaacttcctttccccattctgtt 2504
Query: 1612 ttgtcttcatatccacaactgat 1634
|| |||||||| ||||| |||||
Sbjct: 2503 ttatcttcataaccacagctgat 2481
Score = 85.7 bits (43), Expect = 1e-014
Identities = 154/191 (80%)
Strand = Plus / Minus
Query: 2671 ttgcagaaaggaacccatttctttgcaaattcagatgtttcagacaatgcttcaaatgtc 2730
||||| || |||||||| ||| | ||||||||||| || || || | |||||||||||
Sbjct: 1471 ttgcaaaatggaacccacttcctagcaaattcagacgtctcggagagagcttcaaatgta 1412
Query: 2731 agcatggcagcaccatcatcagaaacgtagcacgaaaccttatcaactggataatccacc 2790
|||||||| |||||||| || || || ||||| | ||| ||||| || |||||||| |||
Sbjct: 1411 agcatggcggcaccatcgtctgacacatagcatgcaactttatccacaggataatcaacc 1352
Query: 2791 gaaaggatagatagaacagtattagcagtgaccaatggaggttccttcaagggatcaacc 2850
| || ||||| |||||||| || ||||||| || |||||||| |||| ||||||||
Sbjct: 1351 gcgagaatagagagaacagtgttcgcagtgatcagcggaggttctttcataggatcaact 1292
Query: 2851 gtactgacaaa 2861
||||| |||||
Sbjct: 1291 gtacttacaaa 1281
Score = 83.8 bits (42), Expect = 5e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 2026 acacatccagtacccacataaattgggccctggataccatccaaacctttcatgttgata 2085
||||| ||||| || ||||| ||||| || || | |||||| || |||||||| || |||
Sbjct: 2116 acacacccagttccaacatatattggtccttgtaaaccatctaatcctttcatatttata 2057
Query: 2086 tcgaaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctt 2145
|| || || ||||| |||| || | |||| |||||| |||||||| |||||||||| |
Sbjct: 2056 tcaaagaatacaacgtttcgattcgagtatctatcatgacgatcaatgccatcaaatcgt 1997
Query: 2146 tgaggaaactgcacatagcaaacttt 2171
||||||||||||||||| ||||||||
Sbjct: 1996 tgaggaaactgcacataacaaacttt 1971
Score = 63.9 bits (32), Expect = 4e-008
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 1075 ccctggaacacagcaaagagatgtgaagacacgcctccaatgacccaaaactgctcgttt 1134
|||||||| | |||||| || ||||| || || |||||||| |||||||| || || |||
Sbjct: 3040 ccctggaagagagcaaacaggtgtgatgaaacacctccaatcacccaaaattgttcattt 2981
Query: 1135 ctccaccagtcatcgatgcctacaccac 1162
|||||||||||||| || || |||||||
Sbjct: 2980 ctccaccagtcatctattccgacaccac 2953
Score = 46.1 bits (23), Expect = 0.010
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 1686 tccaccattctcaagaagtgtggatgcaacaaaaactgaagactggccaaatttcttttc 1745
|||||||||||| ||||| ||||| | ||||| |||| ||| || ||||| ||||||||
Sbjct: 2429 tccaccattctccagaagagtggaaactacaaacactggagattgcccaaacttcttttc 2370
Query: 1746 caacttc 1752
|| ||||
Sbjct: 2369 cagcttc 2363
>gb|AJ778214.1|AJ778214 AJ778214 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400040H10F1, mRNA sequence
Length = 612
Score = 137 bits (69), Expect = 4e-030
Identities = 307/385 (79%), Gaps = 1/385 (0%)
Strand = Plus / Minus
Query: 2188 tccatcataaaacacattgcttcctttatagccttactattattgatatagtgatcacaa 2247
|||||||| |||||||| ||||| || | ||| ||||| ||||||| ||||||||||||
Sbjct: 602 tccatcatgaaacacatggcttc-ttgagagctttactgttattgaagtagtgatcacaa 544
Query: 2248 tccaagttcagcaaataaggagcattagttagtacagcagagactcggaccaatgcattc 2307
|| | ||||| | ||||| | |||| || |||||||| || ||||| | ||| ||||||
Sbjct: 543 tcgacattcagaagataagcaccattggtcagtacagctgaaactcgaatcaacgcattc 484
Query: 2308 atagcaccagccttcttgtgatggttgtagcctggccgtttttctcttgaaacataaacc 2367
|| || || || ||||||||||| | | | || || | ||||| | |||||||| ||
Sbjct: 483 attgctccggctttcttgtgatgctggaatccaggtctcttttcacgggaaacatataca 424
Query: 2368 aatcgaggcagctcatttccttccacatcatggccaccactttgaccaaggaaaacctga 2427
| |||||| ||||||||||| ||| ||| | || ||||| ||||| | || |||||
Sbjct: 423 agtcgaggtagctcatttccatccgtgtcaagccccccactgtgacccaaaaacacctgg 364
Query: 2428 atcattccaggatgatcacggacattatttccgggccatggagttccatcctgcattgtc 2487
|||||||| || ||||| | ||||||||| ||||||||||||||||||||||| |||
Sbjct: 363 atcattcctgggtgatcccttggattatttccaggccatggagttccatcctgcatcgtc 304
Query: 2488 catccttcctcaggaaccttttgggctttagcaaccaaggcattgattctgaccttgaat 2547
|| ||||| ||||| | ||| || ||||| ||||| | |||||||||| |||||||||
Sbjct: 303 caaccttcttcaggcatcttctgagctttggcaacaagagcattgattcgcaccttgaat 244
Query: 2548 tcctcatactctctcttcattgctc 2572
|| ||||| ||||||||||||||||
Sbjct: 243 tcttcatattctctcttcattgctc 219
Score = 48.1 bits (24), Expect = 0.003
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 2671 ttgcagaaaggaacccatttctttgcaaattcagatgtttcagacaatgcttcaaatgtc 2730
||||||||||| ||||| ||| ||||||| || | |||||||| | ||||||||||||
Sbjct: 120 ttgcagaaaggcacccacttccttgcaaactccgcagtttcagaaagggcttcaaatgtc 61
Query: 2731 agcatggcagcaccatcatc 2750
| ||| || | |||||||||
Sbjct: 60 aacattgctgaaccatcatc 41
>gb|CN549808.1|CN549808 GQ0241.B3_H11 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_H11 5', mRNA sequence
Length = 840
Score = 135 bits (68), Expect = 1e-029
Identities = 203/248 (81%)
Strand = Plus / Minus
Query: 1413 aatttcaattgaaccaagagcccaccgaagaacctggtgaagacgatcggaaagattgag 1472
|||||||| ||||| |||||||| ||||| || |||| |||||||| |||||||| |
Sbjct: 675 aatttcaacagaacccagagcccatcgaagcacttggttcagacgatcagaaagattaat 616
Query: 1473 aggtgcggaacctttgaaggcggcccgtttaggtatgcagtaaattgaccgccaaccatg 1532
||| || || ||||| ||||| | || || || || || |||||||||||||||||| |
Sbjct: 615 aggagcagaccctttaaaggctgggcgcttgggcatacaataaattgaccgccaaccacg 556
Query: 1533 gcagtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaat 1592
| ||||||||||| |||||||||||||||||||| || || ||||| ||||| |||||
Sbjct: 555 ggcatgcatcttaaaaccagtaagaatatcttctgtaacagaaccatagatccatccaat 496
Query: 1593 atcttttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttcctt 1652
|| |||||| |||||||||| ||||| |||||||| |||||||| |||||||| ||
Sbjct: 495 ctcagatccccaatctgttttgtcctcatacccacaactaatgacatgaatagcttcttt 436
Query: 1653 cagaagag 1660
|||||||
Sbjct: 435 aagaagag 428
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 1690 ccattctcaagaagtgtggatgcaacaaaaactgaagactggccaaa 1736
|||||||| | ||||||||| ||||||||||| | |||||||||||
Sbjct: 398 ccattctccataagtgtggaagcaacaaaaacagctgactggccaaa 352
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 2023 aagacacatccagtacccacata 2045
|||||||||||||||||||||||
Sbjct: 89 aagacacatccagtacccacata 67
>gb|AF527387.1| Populus tremuloides xylem-specific cellulose synthase (CesA3) mRNA,
complete cds
Length = 3401
Score = 135 bits (68), Expect = 1e-029
Identities = 275/344 (79%)
Strand = Plus / Minus
Query: 1990 ggagcatcgtagccatataatgcctgccttctgaagacacatccagtacccacataaatt 2049
|||| ||| |||||||| || | |||||| ||||||||||||||||||| ||||| | |
Sbjct: 1819 ggaggatcatagccatacaaggactgcctgttgaagacacatccagtaccaacatatact 1760
Query: 2050 gggccctggataccatccaaacctttcatgttgatatcgaaaaagacaacatttctgtta 2109
|| || || | ||||| | |||||||||||| ||||| || || ||||| || | |||
Sbjct: 1759 ggcccttgaaccccatctagacctttcatgtttatatcaaagaacacaacgttgcgatta 1700
Query: 2110 gcatatcgatcatggcgatcaatcccatcaaatctttgaggaaactgcacatagcaaact 2169
||||||| |||||||||||| || |||||||| || || |||||||| |||||||| |
Sbjct: 1699 gcatatctatcatggcgatcgataccatcaaacctctgcggaaactggacatagcagagc 1640
Query: 2170 ttctttccaagcaaaggatccatcataaaacacattgcttcctttatagccttactatta 2229
||||| ||||| |||||||||| ||| ||||| ||||| ||| |||||| || |||
Sbjct: 1639 ttcttcccaagttggggatccatcaaaaagcacatggcttctcttacagccttgctgtta 1580
Query: 2230 ttgatatagtgatcacaatccaagttcagcaaataaggagcattagttagtacagcagag 2289
||||| || || ||||||||||| |||| || | |||| ||||| || || || || |||
Sbjct: 1579 ttgatgtaatggtcacaatccaaattcaacataaaaggtgcattggtgagcactgctgag 1520
Query: 2290 actcggaccaatgcattcatagcaccagccttcttgtgatggtt 2333
||||| | || |||||||| ||||| || |||||||| |||||
Sbjct: 1519 actcgaatcagagcattcatggcacctgctttcttgtggtggtt 1476
Score = 83.8 bits (42), Expect = 5e-014
Identities = 165/206 (80%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacggacattatttccgggccatggagttccatcctgc 2481
||||||||||||||||||||||||||| | ||||| |||||||| || |||||||||
Sbjct: 1387 acctgaatcattccaggatgatcacgggtgatgtttccaggccatggggtaccatcctgc 1328
Query: 2482 attgtccatccttcctcaggaaccttttgggctttagcaaccaaggcattgattctgacc 2541
|| ||||||||| || || ||||||||| || | ||||| || ||||| || ||
Sbjct: 1327 atcacccatccttcttctggtttcttttgggcctttgacaccaatgcgttgatccttact 1268
Query: 2542 ttgaattcctcatactctctcttcattgctctccgttctctaacaaagtttggcgccacc 2601
|||||||| ||||| ||||| ||||| ||||| || || | |||||||| || |||
Sbjct: 1267 ttgaattcttcatattctcttttcatagctctgcgctccttcacaaagttgggatgcact 1208
Query: 2602 ttgtctttcaggtagtctatcttctg 2627
|||||||||| |||||| ||||||||
Sbjct: 1207 ttgtctttcaagtagtcaatcttctg 1182
Score = 58.0 bits (29), Expect = 3e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 787 gtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacgatcacccaa 846
|||||||| ||||| || | |||||| |||||||| || || |||||||| || |||||
Sbjct: 3040 gtcctgttttgccttcccatcagacctttgaggaaaggatagagatggacaatgacccag 2981
Query: 847 aatgcaaagaagagcttcccgaacagggggccccatgattcatatccgttgtt 899
|| || || || |||||||| || | || ||||||||| |||||||||||||
Sbjct: 2980 aaagcgaaaaatagcttcccaaataaaggaccccatgatccatatccgttgtt 2928
Score = 56.0 bits (28), Expect = 1e-005
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 1537 tgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatct 1596
|||||||| || || || || ||||||||||| || || ||||||||||| |||| |||
Sbjct: 2290 tgcatcttgaagcctgtcaggatatcttctgtaacagaaccataaatccatccaacctct 2231
Query: 1597 tttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttcctt 1652
|| ||||| | ||||| |||||||| || ||||| || ||||| || ||||||||
Sbjct: 2230 ttaccccattccgttttttcttcatacccgcaacttataacatgaatggcttcctt 2175
>gb|AY573571.1| Populus tremula x Populus tremuloides cellulose synthase (CesA1)
mRNA, complete cds
Length = 3472
Score = 135 bits (68), Expect = 1e-029
Identities = 275/344 (79%)
Strand = Plus / Minus
Query: 1990 ggagcatcgtagccatataatgcctgccttctgaagacacatccagtacccacataaatt 2049
|||| ||| |||||||| || | |||||| ||||||||||||||||||| ||||| | |
Sbjct: 1891 ggaggatcatagccatacaaggactgcctgttgaagacacatccagtaccaacatatact 1832
Query: 2050 gggccctggataccatccaaacctttcatgttgatatcgaaaaagacaacatttctgtta 2109
|| || || | ||||| | |||||||||||| ||||| || || ||||| || | |||
Sbjct: 1831 ggcccttgaaccccatctagacctttcatgtttatatcaaagaacacaacgttgcgatta 1772
Query: 2110 gcatatcgatcatggcgatcaatcccatcaaatctttgaggaaactgcacatagcaaact 2169
||||||| |||||||||||| || |||||||| || || |||||||| |||||||| |
Sbjct: 1771 gcatatctatcatggcgatcgataccatcaaacctctgcggaaactggacatagcagagc 1712
Query: 2170 ttctttccaagcaaaggatccatcataaaacacattgcttcctttatagccttactatta 2229
||||| ||||| |||||||||| ||| ||||| ||||| ||| |||||| || |||
Sbjct: 1711 ttcttcccaagttggggatccatcaaaaagcacatggcttctcttacagccttgctgtta 1652
Query: 2230 ttgatatagtgatcacaatccaagttcagcaaataaggagcattagttagtacagcagag 2289
||||| || || ||||||||||| |||| || | |||| ||||| || || || || |||
Sbjct: 1651 ttgatgtaatggtcacaatccaaattcaacataaaaggtgcattggtgagcactgctgag 1592
Query: 2290 actcggaccaatgcattcatagcaccagccttcttgtgatggtt 2333
||||| | || |||||||| ||||| || |||||||| |||||
Sbjct: 1591 actcgaatcagagcattcatggcacctgctttcttgtggtggtt 1548
Score = 83.8 bits (42), Expect = 5e-014
Identities = 165/206 (80%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacggacattatttccgggccatggagttccatcctgc 2481
|||||||||||||||||||||||||| | ||||| |||||||| || |||||||||
Sbjct: 1459 acctgaatcattccaggatgatcacgtgtgatgtttccaggccatggggtaccatcctgc 1400
Query: 2482 attgtccatccttcctcaggaaccttttgggctttagcaaccaaggcattgattctgacc 2541
|| ||||||||| || || ||||||||| || | |||||||| ||||| || ||
Sbjct: 1399 atcacccatccttcttctggtttcttttgggcctttgacaccaaggcgttgatccttact 1340
Query: 2542 ttgaattcctcatactctctcttcattgctctccgttctctaacaaagtttggcgccacc 2601
|||||||| ||||| ||||| ||||| ||||| || || | |||||||| || |||
Sbjct: 1339 ttgaattcttcatattctcttttcatagctctgcgctccttcacaaagttgggatgcact 1280
Query: 2602 ttgtctttcaggtagtctatcttctg 2627
|||||||||| |||||| ||||||||
Sbjct: 1279 ttgtctttcaagtagtcaatcttctg 1254
Score = 58.0 bits (29), Expect = 3e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 787 gtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacgatcacccaa 846
|||||||| ||||| || | |||||| |||||||| || || |||||||| || |||||
Sbjct: 3112 gtcctgttttgccttcccatcagacctttgaggaaaggatagagatggacaatgacccag 3053
Query: 847 aatgcaaagaagagcttcccgaacagggggccccatgattcatatccgttgtt 899
|| || || || |||||||| || | || ||||||||| |||||||||||||
Sbjct: 3052 aaagcgaaaaatagcttcccaaataaaggaccccatgatccatatccgttgtt 3000
Score = 56.0 bits (28), Expect = 1e-005
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 1537 tgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatct 1596
|||||||| || || || || ||||||||||| || || ||||||||||| |||| |||
Sbjct: 2362 tgcatcttgaagcctgtcaggatatcttctgtaacagaaccataaatccatccaacctct 2303
Query: 1597 tttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttcctt 1652
|| ||||| | ||||| |||||||| || ||||| || ||||| || ||||||||
Sbjct: 2302 ttaccccattcggttttttcttcatacccgcaacttataacatgaatggcttcctt 2247
>gb|BP924070.1|BP924070 BP924070 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-027_K15.f 5', mRNA sequence
Length = 535
Score = 127 bits (64), Expect = 3e-027
Identities = 202/248 (81%)
Strand = Plus / Minus
Query: 1413 aatttcaattgaaccaagagcccaccgaagaacctggtgaagacgatcggaaagattgag 1472
|||||||| ||||| |||||||| ||||| || |||| |||||||| |||||||| |
Sbjct: 503 aatttcaacagaacctagagcccatcgaagcacttggttcagacgatcagaaagattaat 444
Query: 1473 aggtgcggaacctttgaaggcggcccgtttaggtatgcagtaaattgaccgccaaccatg 1532
||| || || ||||| ||||| | ||||| || |||||||||||||||||||||||| |
Sbjct: 443 aggagcagaccctttaaaggctgggcgtttgggcatgcagtaaattgaccgccaaccacg 384
Query: 1533 gcagtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaat 1592
| |||||||| || |||||||||||||||||||| || || ||||| ||||| || ||
Sbjct: 383 ggcatgcatcttgaatccagtaagaatatcttctgtaacagaaccatagatccatcctat 324
Query: 1593 atcttttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttcctt 1652
|| |||||| |||||||||| || || ||||| ||||||||||| ||||| || ||
Sbjct: 323 ctcagatccccaatctgttttgtcctcgtaaccacagctgatgacatgaatagcctcttt 264
Query: 1653 cagaagag 1660
|||||||
Sbjct: 263 aagaagag 256
>gb|AY573575.1| Populus tremula x Populus tremuloides cellulose synthase (CesA4)
mRNA, complete cds
Length = 3778
Score = 127 bits (64), Expect = 3e-027
Identities = 175/212 (82%)
Strand = Plus / Minus
Query: 2356 gaaacataaaccaatcgaggcagctcatttccttccacatcatggccaccactttgacca 2415
||||||||||||| ||||| | ||| ||||||||| ||| | | ||||||||||||
Sbjct: 1820 gaaacataaaccagacgaggtaactcgcatccttccacgtcacgaactccactttgacca 1761
Query: 2416 aggaaaacctgaatcattccaggatgatcacggacattatttccgggccatggagttcca 2475
||||||||||| ||||| |||||||| || || ||||| ||||| |||||||||||||||
Sbjct: 1760 aggaaaacctggatcatgccaggatggtctcgtacattgtttccaggccatggagttcca 1701
Query: 2476 tcctgcattgtccatccttcctcaggaaccttttgggctttagcaaccaaggcattgatt 2535
|| ||||||||||| || || || ||||||||||| ||| | | |||||| |||| ||
Sbjct: 1700 tcttgcattgtccaaccatcttccggaaccttttgcgctgtggaaaccaacccatttatc 1641
Query: 2536 ctgaccttgaattcctcatactctctcttcat 2567
|| || ||||| || ||||| |||||||||||
Sbjct: 1640 ctcactttgaactcttcatattctctcttcat 1609
Score = 125 bits (63), Expect = 1e-026
Identities = 258/323 (79%)
Strand = Plus / Minus
Query: 1312 gatgtccaagggtatacgatggagttaatgtacgaaaacctttccaggaactttagtcca 1371
|||||||||||||| || | ||||| ||||| ||||| | ||||| |||| | ||||
Sbjct: 2837 gatgtccaagggtacacaactgagtttatgtaggaaaatcgttccaaccacttcaatcca 2778
Query: 1372 ccaccatacccataccagagagggcagtggttgctgaagaaaatttcaattgaaccaaga 1431
|| ||||| |||||||| | || ||||| | ||||||||||| |||| ||||| ||
Sbjct: 2777 cccccataaccataccaaattggacagtgtctactgaagaaaatctcaacagaaccgagg 2718
Query: 1432 gcccaccgaagaacctggtgaagacgatcggaaagattgagaggtgcggaacctttgaag 1491
|||||||||||||||||||| |||||||| || || || | || || || || |||||
Sbjct: 2717 gcccaccgaagaacctggtgtagacgatctgacaggttaattggagctgaccccttgaat 2658
Query: 1492 gcggcccgtttaggtatgcagtaaattgaccgccaaccatggcagtgcatcttaaaccca 1551
|| | ||| |||||||||||||||| |||||||| ||||||||||||||||| || ||
Sbjct: 2657 gcaggccgcttaggtatgcagtaaacagaccgccatccatggcagtgcatcttgaatcct 2598
Query: 1552 gtaagaatatcttctgtgactgatccataaatccaaccaatatcttttccccagcctgtt 1611
|| | ||||| ||||| || || ||||| ||||| |||| || |||||||| |||||
Sbjct: 2597 gtcaagatatcctctgtaacagagccatatatccagccaacttcctttccccattctgtt 2538
Query: 1612 ttgtcttcatatccacaactgat 1634
|| |||||||| ||||| |||||
Sbjct: 2537 ttatcttcataaccacagctgat 2515
Score = 85.7 bits (43), Expect = 1e-014
Identities = 154/191 (80%)
Strand = Plus / Minus
Query: 2671 ttgcagaaaggaacccatttctttgcaaattcagatgtttcagacaatgcttcaaatgtc 2730
||||| || |||||||| ||| | ||||||||||| || || || | |||||||||||
Sbjct: 1505 ttgcaaaatggaacccacttcctagcaaattcagacgtctcggagagagcttcaaatgta 1446
Query: 2731 agcatggcagcaccatcatcagaaacgtagcacgaaaccttatcaactggataatccacc 2790
|||||||| |||||||| || || || ||||| | ||| ||||| || |||||||| |||
Sbjct: 1445 agcatggcggcaccatcgtctgacacatagcatgcaactttatccacaggataatcaacc 1386
Query: 2791 gaaaggatagatagaacagtattagcagtgaccaatggaggttccttcaagggatcaacc 2850
| || ||||| || ||||| || ||||||| || |||||||| |||| |||||||||
Sbjct: 1385 gcgagaatagagagtacagtgttcgcagtgatcagcggaggttctttcataggatcaacc 1326
Query: 2851 gtactgacaaa 2861
||||| |||||
Sbjct: 1325 gtacttacaaa 1315
Score = 83.8 bits (42), Expect = 5e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 2026 acacatccagtacccacataaattgggccctggataccatccaaacctttcatgttgata 2085
||||| ||||| || ||||| ||||| || || | |||||| || |||||||| || |||
Sbjct: 2150 acacacccagttccaacatatattggtccttgtaaaccatctaatcctttcatatttata 2091
Query: 2086 tcgaaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctt 2145
|| || || ||||| |||| || | |||| |||||| |||||||| |||||||||| |
Sbjct: 2090 tcaaagaatacaacgtttcgattcgagtatctatcatgacgatcaatgccatcaaatcgt 2031
Query: 2146 tgaggaaactgcacatagcaaacttt 2171
||||||||||||||||| ||||||||
Sbjct: 2030 tgaggaaactgcacataacaaacttt 2005
Score = 63.9 bits (32), Expect = 4e-008
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 1075 ccctggaacacagcaaagagatgtgaagacacgcctccaatgacccaaaactgctcgttt 1134
|||||||| | |||||| || ||||| || || |||||||| |||||||| || || |||
Sbjct: 3074 ccctggaagagagcaaacaggtgtgatgaaacacctccaatcacccaaaattgttcattt 3015
Query: 1135 ctccaccagtcatcgatgcctacaccac 1162
|||||||||||||| || || |||||||
Sbjct: 3014 ctccaccagtcatctatcccgacaccac 2987
Score = 46.1 bits (23), Expect = 0.010
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 1686 tccaccattctcaagaagtgtggatgcaacaaaaactgaagactggccaaatttcttttc 1745
|||||||||||| ||||| ||||| | ||||| |||| ||| || ||||| ||||||||
Sbjct: 2463 tccaccattctccagaagagtggaaactacaaacactggagattgcccaaacttcttttc 2404
Query: 1746 caacttc 1752
|| ||||
Sbjct: 2403 cagcttc 2397
>gb|CA927446.1|CA927446 MTU6CR.P9.B04 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 648
Score = 125 bits (63), Expect = 1e-026
Identities = 201/247 (81%)
Strand = Plus / Plus
Query: 1413 aatttcaattgaaccaagagcccaccgaagaacctggtgaagacgatcggaaagattgag 1472
|||||||| ||||| |||||||| ||||| || |||| |||||||| |||||||| |
Sbjct: 349 aatttcaacagaacccagagcccatcgaagcacttggttcagacgatcagaaagattaat 408
Query: 1473 aggtgcggaacctttgaaggcggcccgtttaggtatgcagtaaattgaccgccaaccatg 1532
||| || || ||||| ||||| | || || || || || |||||||||||||||||| |
Sbjct: 409 aggagcagaccctttaaaggccgggcgcttgggcatacaataaattgaccgccaaccacg 468
Query: 1533 gcagtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaat 1592
| ||||||||||| |||||||||||||||||||| || || ||||| ||||| |||||
Sbjct: 469 ggcatgcatcttaaaaccagtaagaatatcttctgtaacagaaccatagatccatccaat 528
Query: 1593 atcttttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttcctt 1652
|| |||||| ||||||||| ||||| |||||||| |||||||| |||||||| ||
Sbjct: 529 ctcagatccccaatctgttttgttctcatacccacaactaatgacatgaatagcttcttt 588
Query: 1653 cagaaga 1659
||||||
Sbjct: 589 aagaaga 595
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 1114 atgacccaaaactgctcgtttctccaccagtcatcgatgcctacaccactccatctcatt 1173
|||||||||||||| || || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 50 atgacccaaaactgttcattcctccaccactcatcaatcccaacaccactccacctcatc 109
Query: 1174 tcca 1177
||||
Sbjct: 110 tcca 113
>gb|BU823358.1|BU823358 UB51DPD11 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 609
Score = 121 bits (61), Expect = 2e-025
Identities = 304/385 (78%)
Strand = Plus / Minus
Query: 2188 tccatcataaaacacattgcttcctttatagccttactattattgatatagtgatcacaa 2247
|||||||| | |||||| ||||| || | ||| || || ||||||| ||||||||||||
Sbjct: 597 tccatcatgacacacatggcttctttaagagctttgctgttattgaagtagtgatcacaa 538
Query: 2248 tccaagttcagcaaataaggagcattagttagtacagcagagactcggaccaatgcattc 2307
|| | |||||| | ||| | | |||| || |||||||| || ||||| | || |||||||
Sbjct: 537 tcgacgttcagaagataggcaccattggtcagtacagctgaaactcgaatcagtgcattc 478
Query: 2308 atagcaccagccttcttgtgatggttgtagcctggccgtttttctcttgaaacataaacc 2367
|| || || || ||||||||||| | | | || |||| ||||| | || ||||| ||
Sbjct: 477 attgctccggctttcttgtgatgctggaatccaggcctcttttcacgagatacatataca 418
Query: 2368 aatcgaggcagctcatttccttccacatcatggccaccactttgaccaaggaaaacctga 2427
| ||||| ||||||||||| ||| ||| | || || || ||||| | ||| |||||
Sbjct: 417 agacgaggtagctcatttccatccgtatcgagccccccgctgtgacctaagaacacctgg 358
Query: 2428 atcattccaggatgatcacggacattatttccgggccatggagttccatcctgcattgtc 2487
|||||||| || ||||| | | ||||||||| |||||||||||||||||||||||||||
Sbjct: 357 atcattcctgggtgatccctgggattatttccaggccatggagttccatcctgcattgtc 298
Query: 2488 catccttcctcaggaaccttttgggctttagcaaccaaggcattgattctgaccttgaat 2547
|| ||||| || || | ||| || ||||| ||||| | |||||||| | |||||||||
Sbjct: 297 caaccttcttctggcatcttctgagctttggcaacaagagcattgatccgcaccttgaat 238
Query: 2548 tcctcatactctctcttcattgctc 2572
|| ||||| ||||||||||||||||
Sbjct: 237 tcttcatattctctcttcattgctc 213
Score = 48.1 bits (24), Expect = 0.003
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 2671 ttgcagaaaggaacccatttctttgcaaattcagatgtttcagacaatgcttcaaatgtc 2730
||||||||||| ||||| ||| ||||||| || | |||||||| | |||||||| |||
Sbjct: 114 ttgcagaaaggcacccacttccttgcaaactccgcagtttcagaaagggcttcaaacgtc 55
Query: 2731 agcatggcagcaccatcatcagaaacgtagca 2762
| ||| || | ||||||||| ||||| |||||
Sbjct: 54 aacatagctgaaccatcatctgaaacatagca 23
>gb|CF235713.1|CF235713 PtaJXT0026B7B0703 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 639
Score = 121 bits (61), Expect = 2e-025
Identities = 235/293 (80%)
Strand = Plus / Minus
Query: 1999 tagccatataatgcctgccttctgaagacacatccagtacccacataaattgggccctgg 2058
|||||||| || || |||||| |||| || ||||| || |||||||| | ||| |||||
Sbjct: 585 tagccatacaaagcttgccttttgaaaacgcatcctgtgcccacatacactggaccctga 526
Query: 2059 ataccatccaaacctttcatgttgatatcgaaaaagacaacatttctgttagcatatcga 2118
|| ||||| | ||| |||||||| ||||| || || ||| |||||||| || ||||||
Sbjct: 525 attccatctagacccttcatgttaatatcaaagaaaacagtgtttctgttggcgtatcga 466
Query: 2119 tcatggcgatcaatcccatcaaatctttgaggaaactgcacatagcaaactttctttcca 2178
||||| |||||| |||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 465 tcatgtgtatcaatgccatcaaatctttgaggaaattgcacgtagcagactttctttcca 406
Query: 2179 agcaaaggatccatcataaaacacattgcttcctttatagccttactattattgatatag 2238
| | || ||||||| |||||||| || || | ||||| |||||||| | |||
Sbjct: 405 atctgggggtccatcaagaaacacatagcctctcggacggccttgctattatttacataa 346
Query: 2239 tgatcacaatccaagttcagcaaataaggagcattagttagtacagcagagac 2291
|| ||||||||||||||||||| |||||||||| || ||||| ||||||||
Sbjct: 345 tggtcacaatccaagttcagcatgaaaggagcattggtaagtactgcagagac 293
>gb|AJ779545.1|AJ779545 AJ779545 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800003H02F1, mRNA sequence
Length = 713
Score = 121 bits (61), Expect = 2e-025
Identities = 304/385 (78%)
Strand = Plus / Minus
Query: 2188 tccatcataaaacacattgcttcctttatagccttactattattgatatagtgatcacaa 2247
|||||||| |||||||| ||||| |||| ||| || || ||||||| ||||||||||||
Sbjct: 582 tccatcatgaaacacatggcttcttttagagctttgctgttattgaagtagtgatcacaa 523
Query: 2248 tccaagttcagcaaataaggagcattagttagtacagcagagactcggaccaatgcattc 2307
|| | |||||| | ||| | | |||| || |||||||| || ||||| | || |||||||
Sbjct: 522 tcgacgttcagaagataggcaccattggtcagtacagctgaaactcgaatcagtgcattc 463
Query: 2308 atagcaccagccttcttgtgatggttgtagcctggccgtttttctcttgaaacataaacc 2367
|| || || || ||||||||||| | | | || || | ||||| | |||||||| ||
Sbjct: 462 attgctccggctttcttgtgatgctggaatccaggtctcttttcacgagaaacatataca 403
Query: 2368 aatcgaggcagctcatttccttccacatcatggccaccactttgaccaaggaaaacctga 2427
| ||||| ||||||||||| || ||| | || ||||| ||||| | ||| |||||
Sbjct: 402 agacgaggtagctcatttccatctgtatcgagccccccactgtgacctaagaacacctgg 343
Query: 2428 atcattccaggatgatcacggacattatttccgggccatggagttccatcctgcattgtc 2487
|||||||| || ||||| | | ||||||||| ||||| |||||||| ||||||||||||
Sbjct: 342 atcattcctgggtgatccctgggattatttccaggccacggagttccgtcctgcattgtc 283
Query: 2488 catccttcctcaggaaccttttgggctttagcaaccaaggcattgattctgaccttgaat 2547
|| ||||| || || | ||| || ||||| ||||| | |||||||| | |||||||||
Sbjct: 282 caaccttcttctggcatcttctgagctttggcaacaagagcattgatccgcaccttgaat 223
Query: 2548 tcctcatactctctcttcattgctc 2572
|| ||||| ||||||||||||||||
Sbjct: 222 tcttcatattctctcttcattgctc 198
Score = 48.1 bits (24), Expect = 0.003
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 2671 ttgcagaaaggaacccatttctttgcaaattcagatgtttcagacaatgcttcaaatgtc 2730
||||||||||| ||||| ||| ||||||| || | |||||||| | || |||||||||
Sbjct: 99 ttgcagaaaggcacccacttccttgcaaactctgcagtttcagaaagggcctcaaatgtc 40
Query: 2731 agcatggcagcaccatcatcagaaacgtagca 2762
| ||| || | ||||||||| ||||| |||||
Sbjct: 39 aacatagctgaaccatcatctgaaacatagca 8
>gb|DT500162.1|DT500162 PX0011.BR_G15 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0011_G15
5', mRNA sequence
Length = 701
Score = 121 bits (61), Expect = 2e-025
Identities = 235/293 (80%)
Strand = Plus / Minus
Query: 1999 tagccatataatgcctgccttctgaagacacatccagtacccacataaattgggccctgg 2058
|||||||| || || |||||| |||| || ||||| || |||||||| | ||| |||||
Sbjct: 352 tagccatacaaagcttgccttttgaaaacgcatcctgtgcccacatacactggaccctga 293
Query: 2059 ataccatccaaacctttcatgttgatatcgaaaaagacaacatttctgttagcatatcga 2118
|| ||||| | ||| |||||||| ||||| || || ||| |||||||| || ||||||
Sbjct: 292 attccatctagacccttcatgttaatatcaaagaaaacagtgtttctgttggcgtatcga 233
Query: 2119 tcatggcgatcaatcccatcaaatctttgaggaaactgcacatagcaaactttctttcca 2178
||||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 232 tcatgtgtatcaatgccatcaaatctttgaggaaattgcacgtagcaaactttctttcca 173
Query: 2179 agcaaaggatccatcataaaacacattgcttcctttatagccttactattattgatatag 2238
| | || ||||||| |||||||| || || | ||||| |||||||| | |||
Sbjct: 172 atctgggggtccatcaagaaacacatagcctctcgaacggccttgctattatttacataa 113
Query: 2239 tgatcacaatccaagttcagcaaataaggagcattagttagtacagcagagac 2291
|| ||||||||||||||||||| |||||||||| || || || ||||||||
Sbjct: 112 tggtcacaatccaagttcagcatgaaaggagcattggtaagcactgcagagac 60
Score = 58.0 bits (29), Expect = 3e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 1609 gttttgtcttcatatccacaactgatgacatgtatagcttc 1649
|||||||||||||||||||||||||| ||||| || |||||
Sbjct: 643 gttttgtcttcatatccacaactgatcacatggatggcttc 603
>gb|CF235321.1|CF235321 PtaJXT0021D9D0907 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 486
Score = 119 bits (60), Expect = 8e-025
Identities = 138/164 (84%)
Strand = Plus / Minus
Query: 721 atccggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaatgacaatc 780
|||||||||||||||| |||||||| ||||||||||| | ||||| | || |||||
Sbjct: 212 atccggacccaaagcaaggagaagatggaagccaggagcactgaccatataaccacaata 153
Query: 781 gttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacgatc 840
|| || |||||||| |||||||| | ||||| |||||||| ||||| |||||||| |||
Sbjct: 152 gtcggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatc 93
Query: 841 acccaaaatgcaaagaagagcttcccgaacagggggccccatga 884
||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 92 acccagaaggcaaagaagagcttcccgaatagaggtccccatga 49
>gb|CV252351.1|CV252351 PX0011.B21_G15 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0011_G15 3', mRNA sequence
Length = 445
Score = 119 bits (60), Expect = 8e-025
Identities = 138/164 (84%)
Strand = Plus / Plus
Query: 721 atccggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaatgacaatc 780
|||||||||||||||| ||||| || ||||||| ||| | ||||| | || |||||
Sbjct: 222 atccggacccaaagcaaggagaaaatggaagccaagagcactgaccatataaccacaata 281
Query: 781 gttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacgatc 840
|| || |||||||| |||||||| | || ||| ||||||||||||||||||||||| |||
Sbjct: 282 gtcggtgtcctgttttgcctccccatcaaacctttgaggaacgggtaaagatggacaatc 341
Query: 841 acccaaaatgcaaagaagagcttcccgaacagggggccccatga 884
||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 342 acccagaaggcaaagaagagcttcccgaatagaggtccccatga 385
>gb|AF081534.1|AF081534 Populus x canescens cellulose synthase (cel1) mRNA, complete cds
Length = 3395
Score = 119 bits (60), Expect = 8e-025
Identities = 216/268 (80%)
Strand = Plus / Minus
Query: 1990 ggagcatcgtagccatataatgcctgccttctgaagacacatccagtacccacataaatt 2049
|||| ||| |||||||| || | |||||| ||||||||||||||||||| ||||| | |
Sbjct: 1807 ggaggatcatagccatacaaggactgcctgttgaagacacatccagtaccaacatatact 1748
Query: 2050 gggccctggataccatccaaacctttcatgttgatatcgaaaaagacaacatttctgtta 2109
|| || || | ||||| | |||||||||||| ||||| || || ||||| || | |||
Sbjct: 1747 ggcccttgaaccccatctagacctttcatgtttatatcaaagaacacaacgttgcgatta 1688
Query: 2110 gcatatcgatcatggcgatcaatcccatcaaatctttgaggaaactgcacatagcaaact 2169
||||||| |||||||||||| || |||||||| || || |||||||| |||||||| |
Sbjct: 1687 gcatatctatcatggcgatcgataccatcaaacctctgcggaaactggacatagcagagc 1628
Query: 2170 ttctttccaagcaaaggatccatcataaaacacattgcttcctttatagccttactatta 2229
||||| ||||| |||||||||| ||| ||||| ||||| ||| |||||| || |||
Sbjct: 1627 ttcttcccaagttggggatccatcaaaaagcacatggcttctcttacagccttgctgtta 1568
Query: 2230 ttgatatagtgatcacaatccaagttca 2257
||||| || || ||||||||||| ||||
Sbjct: 1567 ttgatgtaatggtcacaatccaaattca 1540
Score = 83.8 bits (42), Expect = 5e-014
Identities = 165/206 (80%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacggacattatttccgggccatggagttccatcctgc 2481
|||||||||||||||||||||||||| | ||||| |||||||| || |||||||||
Sbjct: 1375 acctgaatcattccaggatgatcacgtgtgatgtttccaggccatggggtaccatcctgc 1316
Query: 2482 attgtccatccttcctcaggaaccttttgggctttagcaaccaaggcattgattctgacc 2541
|| ||||||||| || || ||||||||| || | |||||||| ||||| || ||
Sbjct: 1315 atcacccatccttcttctggtttcttttgggcctttgacaccaaggcgttgatccttact 1256
Query: 2542 ttgaattcctcatactctctcttcattgctctccgttctctaacaaagtttggcgccacc 2601
|||||||| ||||| ||||| ||||| ||||| || || | |||||||| || |||
Sbjct: 1255 ttgaattcttcatattctcttttcatagctctgcgctccttcacaaagttgggatgcact 1196
Query: 2602 ttgtctttcaggtagtctatcttctg 2627
|||||||||| |||||| ||||||||
Sbjct: 1195 ttgtctttcaagtagtcaatcttctg 1170
Score = 56.0 bits (28), Expect = 1e-005
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 1537 tgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatct 1596
|||||||| || || || || ||||||||||| || || ||||||||||| |||| |||
Sbjct: 2278 tgcatcttgaagcctgtcaggatatcttctgtaacagaaccataaatccatccaacctct 2219
Query: 1597 tttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttcctt 1652
|| ||||| | ||||| |||||||| || ||||| || ||||| || ||||||||
Sbjct: 2218 ttaccccattcggttttttcttcatacccgcaacttataacatgaatggcttcctt 2163
Score = 50.1 bits (25), Expect = 6e-004
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 807 cagacccttgaggaacgggtaaagatggacgatcacccaaaatgcaaagaagagcttccc 866
|||||| |||||||| || || |||||||| || ||||| || || || || ||||||||
Sbjct: 3008 cagacctttgaggaaaggatagagatggacaatgacccagaaagcgaaaaatagcttccc 2949
Query: 867 gaacagggggccccatgattcatatccgttgtt 899
|| | || ||||||||| |||||||||||||
Sbjct: 2948 aaataaaggaccccatgatccatatccgttgtt 2916
>gb|AY095297.1| Populus tremuloides cellulose synthase (CesA2) mRNA, complete cds
Length = 3277
Score = 119 bits (60), Expect = 8e-025
Identities = 138/164 (84%)
Strand = Plus / Minus
Query: 721 atccggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaatgacaatc 780
|||||||||||||||| |||||||| ||||||||||| | ||||| | || |||||
Sbjct: 3058 atccggacccaaagcaaggagaagatggaagccaggagcactgaccatataaccacaata 2999
Query: 781 gttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacgatc 840
|| || |||||||| |||||||| | ||||| |||||||| ||||| |||||||| |||
Sbjct: 2998 gtcggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatc 2939
Query: 841 acccaaaatgcaaagaagagcttcccgaacagggggccccatga 884
||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 2938 acccagaaggcaaagaagagcttcccgaatagaggtccccatga 2895
Score = 113 bits (57), Expect = 5e-023
Identities = 150/181 (82%)
Strand = Plus / Minus
Query: 1999 tagccatataatgcctgccttctgaagacacatccagtacccacataaattgggccctgg 2058
|||||||| || || |||||| |||| || ||||| || |||||||| | ||| |||||
Sbjct: 1876 tagccatacaaagcttgccttttgaaaacgcatcctgtgcccacatacactggaccctga 1817
Query: 2059 ataccatccaaacctttcatgttgatatcgaaaaagacaacatttctgttagcatatcga 2118
|| ||||| | ||| |||||||| |||||||| || ||| |||||||| || ||||||
Sbjct: 1816 attccatctagacccttcatgttaatatcgaagaaaacagtgtttctgttggcgtatcga 1757
Query: 2119 tcatggcgatcaatcccatcaaatctttgaggaaactgcacatagcaaactttctttcca 2178
||||| |||||| |||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct: 1756 tcatgtgtatcaatgccatcaaatctttgaggaaattgcacgtagcaaactctctttcca 1697
Query: 2179 a 2179
|
Sbjct: 1696 a 1696
Score = 63.9 bits (32), Expect = 4e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 1609 gttttgtcttcatatccacaactgatgacatgtatagcttcctt 1652
|||||||||||||||||||||||||| ||||| || ||||||||
Sbjct: 2167 gttttgtcttcatatccacaactgatcacatggatggcttcctt 2124
Score = 58.0 bits (29), Expect = 3e-006
Identities = 176/225 (78%)
Strand = Plus / Minus
Query: 2371 cgaggcagctcatttccttccacatcatggccaccactttgaccaaggaaaacctgaatc 2430
||||| ||||| || ||||| || ||||| || ||||| ||||| || || || ||||||
Sbjct: 1504 cgagggagctcgttcccttcaacgtcatgtcctccactgtgaccgagaaatacttgaatc 1445
Query: 2431 attccaggatgatcacggacattatttccgggccatggagttccatcctgcattgtccat 2490
|| ||||| ||||| | ||| ||||| |||||||| |||||||| ||||| ||||
Sbjct: 1444 ataccagggtgatccctcgtattgtttccaggccatggtgttccatcttgcataatccac 1385
Query: 2491 ccttcctcaggaaccttttgggctttagcaaccaaggcattgattctgaccttgaattcc 2550
|| || ||||||||| || ||||| || || | ||||| || | |||||||||||
Sbjct: 1384 ccctctgtaggaaccttctgtgcttttgctacaatcgcatttatccgaaccttgaattct 1325
Query: 2551 tcatactctctcttcattgctctccgttctctaacaaagtttggc 2595
||||| ||||||||||| |||| ||||| |||||||| |||||
Sbjct: 1324 tcatattctctcttcatagctcgacgttccttaacaaaggttggc 1280
Score = 52.0 bits (26), Expect = 2e-004
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 1084 acagcaaagagatgtgaagacacgcctccaatgacccaaaactgctcgtttctccaccag 1143
||||||||||| || | |||||| || || || ||||| || |||||||||||||||||
Sbjct: 2695 acagcaaagaggtgagcagacacaccacctataacccagaattgctcgtttctccaccat 2636
Query: 1144 tcatcgatgcctacaccactccatct 1169
|| || |||| ||| || ||||||||
Sbjct: 2635 tcctcaatgcttactccgctccatct 2610
>gb|CA931952.1|CA931952 MTU4TA.P25.A10 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 629
Score = 115 bits (58), Expect = 1e-023
Identities = 250/314 (79%)
Strand = Plus / Plus
Query: 2128 tcaatcccatcaaatctttgaggaaactgcacatagcaaactttctttccaagcaaagga 2187
||||| |||||||||||||| ||||| || |||||||| || | |||||||| ||||
Sbjct: 266 tcaatgccatcaaatctttgtggaaattgaacatagcagacatgttttccaagattagga 325
Query: 2188 tccatcataaaacacattgcttcctttatagccttactattattgatatagtgatcacaa 2247
|||||||| |||||||| ||||| | | |||||| ||||| || | |||||||||||
Sbjct: 326 tccatcatgaaacacatagcttctctcaaagccttgctattgtttacgtagtgatcacag 385
Query: 2248 tccaagttcagcaaataaggagcattagttagtacagcagagactcggaccaatgcattc 2307
|| | |||| ||| |||| |||||||||| ||||| || || || || | |||||||
Sbjct: 386 tcaagattcaacaagaaaggcccattagttagcacagctgatacacgaacaagtgcattc 445
Query: 2308 atagcaccagccttcttgtgatggttgtagcctggccgtttttctcttgaaacataaacc 2367
|| |||||||| |||||||| || | | ||||||| || ||||| | |||||||||||
Sbjct: 446 atggcaccagctttcttgtggtgctggaagcctggacgcttttcacgagaaacataaact 505
Query: 2368 aatcgaggcagctcatttccttccacatcatggccaccactttgaccaaggaaaacctga 2427
|| || ||||||||||| || || |||| | || |||||||| || | ||||||||||
Sbjct: 506 aaccgtggcagctcattaccatcagtatcaagccctccactttgccctaagaaaacctga 565
Query: 2428 atcattccaggatg 2441
|||||||| |||||
Sbjct: 566 atcattcctggatg 579
>gb|AJ779945.1|AJ779945 AJ779945 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800009G06F1, mRNA sequence
Length = 735
Score = 115 bits (58), Expect = 1e-023
Identities = 305/386 (79%), Gaps = 1/386 (0%)
Strand = Plus / Minus
Query: 2188 tccatcataaaac-acattgcttcctttatagccttactattattgatatagtgatcaca 2246
|||||||| |||| |||| ||||| |||| ||| || || ||||||| |||||||||||
Sbjct: 606 tccatcatgaaacnacatggcttcttttagagctttgctgttattgaagtagtgatcaca 547
Query: 2247 atccaagttcagcaaataaggagcattagttagtacagcagagactcggaccaatgcatt 2306
||| | |||||| | ||| | | |||| || |||||||| || ||||| | || ||||||
Sbjct: 546 atcgacgttcagaagataggcaccattggtcagtacagctgaaactcgaatcagtgcatt 487
Query: 2307 catagcaccagccttcttgtgatggttgtagcctggccgtttttctcttgaaacataaac 2366
||| || || || ||||||||||| | | | || || | ||||| | |||||||| ||
Sbjct: 486 cattgctccggctttcttgtgatgctggaatccaggtctcttttcacgagaaacatatac 427
Query: 2367 caatcgaggcagctcatttccttccacatcatggccaccactttgaccaaggaaaacctg 2426
| ||||| ||||||||||| || ||| | || ||||| ||||| | ||| |||||
Sbjct: 426 aagacgaggtagctcatttccatctgtatcgagccccccactgtgacctaagaacacctg 367
Query: 2427 aatcattccaggatgatcacggacattatttccgggccatggagttccatcctgcattgt 2486
|||||||| || ||||| | | ||||||||| ||||| ||||||||||||||||||||
Sbjct: 366 gatcattcctgggtgatccctgggattatttccaggccacggagttccatcctgcattgt 307
Query: 2487 ccatccttcctcaggaaccttttgggctttagcaaccaaggcattgattctgaccttgaa 2546
||| ||||| || || | ||| || ||||| ||||| | |||||||| | ||||||||
Sbjct: 306 ccaaccttcttctggcatcttctgagctttggcaacaagagcattgatccgcaccttgaa 247
Query: 2547 ttcctcatactctctcttcattgctc 2572
||| ||||| ||||||||||||||||
Sbjct: 246 ttcttcatattctctcttcattgctc 221
Score = 56.0 bits (28), Expect = 1e-005
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 2671 ttgcagaaaggaacccatttctttgcaaattcagatgtttcagacaatgcttcaaatgtc 2730
||||||||||| ||||| ||| ||||||| || | |||||||| | ||||||||||||
Sbjct: 122 ttgcagaaaggcacccacttccttgcaaactctgcagtttcagaaagggcttcaaatgtc 63
Query: 2731 agcatggcagcaccatcatcagaaacgtagca 2762
| ||| || | ||||||||| ||||| |||||
Sbjct: 62 aacatagctgaaccatcatctgaaacatagca 31
>gb|CN523759.1|CN523759 GQ015M04.T3_A09 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M04_A09 5', mRNA sequence
Length = 677
Score = 113 bits (57), Expect = 5e-023
Identities = 261/329 (79%)
Strand = Plus / Minus
Query: 1306 gggatagatgtccaagggtatacgatggagttaatgtacgaaaacctttccaggaacttt 1365
||||| ||||||||||| || || | ||||| ||||| ||||| | |||||| ||||
Sbjct: 511 gggatggatgtccaaggatacacaacagagtttatgtaagaaaatcgttccagccacttc 452
Query: 1366 agtccaccaccatacccataccagagagggcagtggttgctgaagaaaatttcaattgaa 1425
| |||||| ||||| |||||||| | || ||||| | || |||||||| || | ||||
Sbjct: 451 aatccacccccataaccataccaaattggacagtgtctactaaagaaaatctcgactgaa 392
Query: 1426 ccaagagcccaccgaagaacctggtgaagacgatcggaaagattgagaggtgcggaacct 1485
||||| ||||| |||||||||||||| |||||||| || || || | ||| || || ||
Sbjct: 391 ccaagggcccatcgaagaacctggtgtagacgatctgagaggttaataggagctgacccc 332
Query: 1486 ttgaaggcggcccgtttaggtatgcagtaaattgaccgccaaccatggcagtgcatctta 1545
|| || || | ||| |||||||||||||| | |||||||| |||||||||||||||||
Sbjct: 331 ttaaatgcaggccgcttaggtatgcagtacacagaccgccacccatggcagtgcatcttg 272
Query: 1546 aacccagtaagaatatcttctgtgactgatccataaatccaaccaatatcttttccccag 1605
|| || || || ||||||||||| || || ||||| ||||| |||| || || |||||
Sbjct: 271 aatcctgtcaggatatcttctgttacagaaccatatatccagccaacttccttgccccat 212
Query: 1606 cctgttttgtcttcatatccacaactgat 1634
|||| || |||||||| ||||| |||||
Sbjct: 211 tctgtcttatcttcataaccacagctgat 183
Score = 61.9 bits (31), Expect = 2e-007
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 1686 tccaccattctcaagaagtgtggatgcaacaaaaactgaagactggccaaatttcttttc 1745
|||||||||||| ||||| ||||| || ||||| |||| ||| || ||||| ||||||||
Sbjct: 131 tccaccattctccagaagagtggaagctacaaacactggagattgcccaaacttcttttc 72
Query: 1746 caacttc 1752
|||||||
Sbjct: 71 caacttc 65
>gb|CA926289.1|CA926289 MTU6CR.P13.C05 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 429
Score = 111 bits (56), Expect = 2e-022
Identities = 212/264 (80%)
Strand = Plus / Minus
Query: 2070 acctttcatgttgatatcgaaaaagacaacatttctgttagcatatcgatcatggcgatc 2129
|||||||||||| ||||| || || ||||| || | |||||||||| ||||||||||||
Sbjct: 399 acctttcatgtttatatcaaagaacacaacgttgcgattagcatatctatcatggcgatc 340
Query: 2130 aatcccatcaaatctttgaggaaactgcacatagcaaactttctttccaagcaaaggatc 2189
|| |||||||| || || |||||||| |||||||| | ||||| ||||| |||||
Sbjct: 339 gataccatcaaacctctgcggaaactggacatagcagagcttcttcccaagttggggatc 280
Query: 2190 catcataaaacacattgcttcctttatagccttactattattgatatagtgatcacaatc 2249
||||| ||| ||||| ||||| ||| |||||| || |||||||| || || ||||||||
Sbjct: 279 catcaaaaagcacatggcttctcttacagccttgctgttattgatgtaatggtcacaatc 220
Query: 2250 caagttcagcaaataaggagcattagttagtacagcagagactcggaccaatgcattcat 2309
||| |||| || | |||| ||||| || || || || |||||||| | || ||||||||
Sbjct: 219 caaattcaacataaaaggtgcattggtgagcactgctgagactcgaatcagggcattcat 160
Query: 2310 agcaccagccttcttgtgatggtt 2333
||||| || |||||||| |||||
Sbjct: 159 ggcacctgctttcttgtggtggtt 136
Score = 52.0 bits (26), Expect = 2e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacg 2447
||||||||||||||||||||||||||
Sbjct: 47 acctgaatcattccaggatgatcacg 22
>gb|CF237106.1|CF237106 Ptajxtjxt2B1B0103 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 663
Score = 109 bits (55), Expect = 8e-022
Identities = 255/323 (78%)
Strand = Plus / Minus
Query: 1312 gatgtccaagggtatacgatggagttaatgtacgaaaacctttccaggaactttagtcca 1371
||||||||||| || || | ||||| ||||| ||||| |||||| |||| | ||||
Sbjct: 520 gatgtccaaggatacacaacagagtttatgtaagaaaatngttccagccacttcaatcca 461
Query: 1372 ccaccatacccataccagagagggcagtggttgctgaagaaaatttcaattgaaccaaga 1431
|||||||| |||||||| | || ||||| | | |||||||| || | |||||||||
Sbjct: 460 ccaccataaccataccaaattggacagtgtctantaaagaaaatctcgantgaaccaagg 401
Query: 1432 gcccaccgaagaacctggtgaagacgatcggaaagattgagaggtgcggaacctttgaag 1491
|||||| ||||||||||||| |||||||| || || || | ||| || || || || ||
Sbjct: 400 gcccacngaagaacctggtgtagacgatctgagaggttaataggagccgaccccttaaat 341
Query: 1492 gcggcccgtttaggtatgcagtaaattgaccgccaaccatggcagtgcatcttaaaccca 1551
|| | ||| |||||||||||||| | |||||||| || |||||||||||||| || ||
Sbjct: 340 gcaggccgcttaggtatgcagtacacagaccgccacccgtggcagtgcatcttgaatcct 281
Query: 1552 gtaagaatatcttctgtgactgatccataaatccaaccaatatcttttccccagcctgtt 1611
|| || ||||||||||| || || ||||||||||| |||| || || ||||| ||||
Sbjct: 280 gtcaggatatcttctgttacagaaccataaatccagccaacttccttgccccattctgtc 221
Query: 1612 ttgtcttcatatccacaactgat 1634
|| |||||||| ||||| |||||
Sbjct: 220 ttatcttcataaccacagctgat 198
Score = 44.1 bits (22), Expect = 0.040
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 1699 agaagtgtggatgcaacaaaaactgaagactggccaaatttcttttccaacttc 1752
||||| ||||| || ||||| |||| ||| || ||||| |||||||||||||||
Sbjct: 139 agaagagtggaagctacaaacactggagattgcccaaacttcttttccaacttc 86
>gb|CV275712.1|CV275712 WS0177.B21_F22 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0177_F22 3', mRNA sequence
Length = 419
Score = 109 bits (55), Expect = 8e-022
Identities = 229/287 (79%)
Strand = Plus / Plus
Query: 1306 gggatagatgtccaagggtatacgatggagttaatgtacgaaaacctttccaggaacttt 1365
||||| ||||||||||| || || | ||||| ||||| ||||| | |||||| ||||
Sbjct: 127 gggatggatgtccaaggatacacaacagagtttatgtaagaaaatcgttccagccacttc 186
Query: 1366 agtccaccaccatacccataccagagagggcagtggttgctgaagaaaatttcaattgaa 1425
| |||||| ||||| |||||||| | || ||||| | || |||||||| || | ||||
Sbjct: 187 aatccacccccataaccataccaaattggacagtgtctactaaagaaaatctcgactgaa 246
Query: 1426 ccaagagcccaccgaagaacctggtgaagacgatcggaaagattgagaggtgcggaacct 1485
||||| ||||| |||||||||||||| |||||||| || || || | ||| || || ||
Sbjct: 247 ccaagggcccatcgaagaacctggtgtagacgatctgagaggttaataggagctgacccc 306
Query: 1486 ttgaaggcggcccgtttaggtatgcagtaaattgaccgccaaccatggcagtgcatctta 1545
|| || || | ||| |||||||||||||| | |||||||| |||||||||||||||||
Sbjct: 307 ttaaatgcaggccgcttaggtatgcagtacacagaccgccacccatggcagtgcatcttg 366
Query: 1546 aacccagtaagaatatcttctgtgactgatccataaatccaaccaat 1592
|| || || || ||||||||||| || || ||||| ||||| |||||
Sbjct: 367 aatcctgtcaggatatcttctgttacagaaccatatatccagccaat 413
>gb|CF232388.1|CF232388 PtaJXO0009H2H0216 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 629
Score = 105 bits (53), Expect = 1e-020
Identities = 136/164 (82%)
Strand = Plus / Minus
Query: 721 atccggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaatgacaatc 780
||||| |||||||||| |||||||| ||||||||||| ||||| | || |||||
Sbjct: 595 atccgaacccaaagcaaggagaagatggaagccaggagcnctgaccatataaccacaata 536
Query: 781 gttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacgatc 840
|| || |||||||| |||||||| | ||||| |||||||| ||||| |||||||| |||
Sbjct: 535 gtcggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatc 476
Query: 841 acccaaaatgcaaagaagagcttcccgaacagggggccccatga 884
||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 475 acccagaaggcaaagaagagcttcccgaatagaggtccccatga 432
Score = 42.1 bits (21), Expect = 0.16
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 1117 acccaaaactgctcgtttctccaccagtcatcgatgcctacaccactccatct 1169
||||| || ||||||||||||||||| || || |||| ||| || ||||||||
Sbjct: 199 acccagaattgctcgtttctccaccattcctcaatgcttactccgctccatct 147
>gb|AY573573.2| Populus tremula x Populus tremuloides cellulose synthase (CesA3-1)
mRNA, complete cds
Length = 3250
Score = 105 bits (53), Expect = 1e-020
Identities = 169/205 (82%), Gaps = 2/205 (0%)
Strand = Plus / Minus
Query: 2669 ttttgcagaaaggaacccatttctttgcaaattcagatgtttcagacaat-gcttcaaat 2727
|||||||||| |||||||| ||| ||||||| |||| |||||| |||| | |||||||
Sbjct: 1004 ttttgcagaatggaacccacttccttgcaaactcagctgtttct-acaagagattcaaat 946
Query: 2728 gtcagcatggcagcaccatcatcagaaacgtagcacgaaaccttatcaactggataatcc 2787
|| ||||| ||||||||||||||||| || ||||| ||||| ||||| || ||||| |||
Sbjct: 945 gtaagcatagcagcaccatcatcagacacatagcaggaaactttatccacgggatagtcc 886
Query: 2788 accgaaaggatagatagaacagtattagcagtgaccaatggaggttccttcaagggatca 2847
|| | |||||| || || || ||||| ||||||| ||||||||| || |||| ||||||
Sbjct: 885 acagcaaggatggaaaggactgtattggcagtgatcaatggaggctctttcagtggatca 826
Query: 2848 accgtactgacaaagaaatcaacag 2872
|| ||||| || || ||||| ||||
Sbjct: 825 acagtactcacgaaaaaatccacag 801
Score = 89.7 bits (45), Expect = 8e-016
Identities = 195/245 (79%)
Strand = Plus / Minus
Query: 1408 aagaaaatttcaattgaaccaagagcccaccgaagaacctggtgaagacgatcggaaaga 1467
||||||||||| | || |||||||||||||| ||||||||||| | | ||| || |||
Sbjct: 2226 aagaaaatttccacagatccaagagcccaccggagaacctggtgcaatctatcagacaga 2167
Query: 1468 ttgagaggtgcggaacctttgaaggcggcccgtttaggtatgcagtaaattgaccgccaa 1527
|||| ||||| || |||||||| || | || | || |||||||| ||||| | |||
Sbjct: 2166 ttgatgggtgcagatcctttgaatgctggccttacgggcatgcagtatattgatctccat 2107
Query: 1528 ccatggcagtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaa 1587
|| ||||||||||||| || ||| | | ||||| || ||||| || ||||||||||||
Sbjct: 2106 cctcggcagtgcatcttgaatccacttaagatatcctcagtgaccgacccataaatccaa 2047
Query: 1588 ccaatatcttttccccagcctgttttgtcttcatatccacaactgatgacatgtatagct 1647
||||| ||||||||||| | || || |||||| | ||||| | ||||||||| ||||||
Sbjct: 2046 ccaatctcttttccccattcagtcttctcttcaaagccacagccgatgacatgaatagct 1987
Query: 1648 tcctt 1652
|||||
Sbjct: 1986 tcctt 1982
Score = 58.0 bits (29), Expect = 3e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 2413 ccaaggaaaacctgaatcattccaggatgatcacggacattatttccgggccatggagtt 2472
|||||||| ||||||||||| ||||| |||||||| |||||||| ||||| || |||
Sbjct: 1260 ccaaggaatacctgaatcatgccagggtgatcacgtgtgttatttcctggccaaggtgtt 1201
Query: 2473 ccatcctgcattgtccatccttcctcagg 2501
|| || ||||| |||||||| || |||||
Sbjct: 1200 ccgtcttgcatagtccatccctcgtcagg 1172
Score = 50.1 bits (25), Expect = 6e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 2021 tgaagacacatccagtacccacataaattgggccctggataccatccaaacctttcatgt 2080
|||| ||||| ||||| |||||||| ||||| || || || |||||||| ||||||||||
Sbjct: 1652 tgaaaacacaaccagttcccacatacattggtccttgaatgccatccaatcctttcatgt 1593
Query: 2081 t 2081
|
Sbjct: 1592 t 1592
>gb|CA932078.1|CA932078 MTU4TA.P26.F03 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 596
Score = 101 bits (51), Expect = 2e-019
Identities = 328/419 (78%), Gaps = 1/419 (0%)
Strand = Plus / Plus
Query: 2023 aagacacatccagtacccacataaattgggccctggataccatccaaacctttcatgttg 2082
|||||||||||||| |||||||| | || || || |||||||||||||| || |||
Sbjct: 158 aagacacatccagtgcccacatagacaggtccttgaataccatccaaaccccccaagttt 217
Query: 2083 atatcgaaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaat 2142
||||| || || ||| ||| | || ||||||||||||| ||||| |||||||||
Sbjct: 218 atatcaaagaacacagtattgcgattggcatatcgatcattcttgtcaatgccatcaaat 277
Query: 2143 ctttgaggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacac 2202
||||| ||||| || |||||||| || | |||||||| |||||||||||| ||||||
Sbjct: 278 ctttgtggaaattgaacatagcagacatgttttccaagattaggatccatcatgaaacac 337
Query: 2203 attgcttcctttatagccttactattattgatatagtgatcacaatccaagttcagcaaa 2262
|| ||||| | | |||||| ||||| || | ||||||||||| || | |||| |||
Sbjct: 338 atagcttctctcaaagccttgctattgtttacgtagtgatcacagtcaagattcaacaag 397
Query: 2263 taaggagcattagttagtacagcagagactcggaccaatgcattcatagcaccagccttc 2322
|||| |||||||||| ||||| || || || || | ||||||||| |||||||| |||
Sbjct: 398 aaaggcccattagttagcacagctgatacacgaacaagtgcattcatggcaccagctttc 457
Query: 2323 ttgtgatggttgtagcctggccgtttttctcttgaaacataaaccaatcgaggcagctca 2382
||||| || | | ||||||| || ||||| | ||||||||||| || || |||||||||
Sbjct: 458 ttgtggtgctggaagcctggacgcttttcacgagaaacataaactaaccgtggcagctca 517
Query: 2383 tttccttccacatcatggccaccactttgaccaaggaaaacctgaatcattccaggatg 2441
|| || || |||| | || |||||||| || | | |||||||||||||||| |||||
Sbjct: 518 ttaccatcagtatcaagccctccactttgccctaag-aaacctgaatcattcctggatg 575
>gb|AJ778410.1|AJ778410 AJ778410 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000500004B05F1, mRNA sequence
Length = 634
Score = 101 bits (51), Expect = 2e-019
Identities = 138/167 (82%)
Strand = Plus / Minus
Query: 718 tcgatccggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaatgaca 777
||||| |||||||| |||| |||||||| ||||||| ||| | ||||| | || |||
Sbjct: 423 tcgattcggacccatagcaaggagaagatggaagccaagagcactgaccatataacaaca 364
Query: 778 atcgttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacg 837
|| || || |||||||| |||||||| | ||||| |||||||| ||||| ||||||||
Sbjct: 363 atagtgggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatggaca 304
Query: 838 atcacccaaaatgcaaagaagagcttcccgaacagggggccccatga 884
|||||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 303 atcacccagaaggcaaagaagagcttcccgaatagaggtccccatga 257
>gb|CX169886.1|CX169886 G10_69-94_14.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 620
Score = 101 bits (51), Expect = 2e-019
Identities = 327/419 (78%)
Strand = Plus / Minus
Query: 2023 aagacacatccagtacccacataaattgggccctggataccatccaaacctttcatgttg 2082
||||||||||||||||||||||| | || || || |||||||||| ||| ||| |||
Sbjct: 436 aagacacatccagtacccacatagacaggtccttgaataccatccagacccctcaagttt 377
Query: 2083 atatcgaaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaat 2142
||||| || || ||| ||| | || ||||||||||||| | ||||| |||||||||
Sbjct: 376 atatcaaagaatacagtattgcgattggcatatcgatcattcctgtcaatgccatcaaat 317
Query: 2143 ctttgaggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacac 2202
||||| |||||||| |||||||| || | || ||||| |||||||||||| ||||||
Sbjct: 316 ctttgtggaaactgaacatagcagacatgtttcccaaggttaggatccatcatgaaacac 257
Query: 2203 attgcttcctttatagccttactattattgatatagtgatcacaatccaagttcagcaaa 2262
|| ||||| | | |||||| ||||| || || || ||||||||||| | |||| |||
Sbjct: 256 atagcttctctcaaagccttgctattgtttatgtaatgatcacaatcaagattcaacaag 197
Query: 2263 taaggagcattagttagtacagcagagactcggaccaatgcattcatagcaccagccttc 2322
|||| |||||||||| || || || || || || | || |||||| ||||| || |||
Sbjct: 196 aaaggcccattagttagaacggctgatacacgaacaagtgaattcatggcaccggctttc 137
Query: 2323 ttgtgatggttgtagcctggccgtttttctcttgaaacataaaccaatcgaggcagctca 2382
||||| || | | |||| || || ||||| | ||||||||||| || || || ||||||
Sbjct: 136 ttgtggtgctggaagcccggacgcttttcacgagaaacataaactaaccgcggaagctca 77
Query: 2383 tttccttccacatcatggccaccactttgaccaaggaaaacctgaatcattccaggatg 2441
|| || || |||| | || |||||||| || | |||||||||||||||||| |||||
Sbjct: 76 ttaccatcagaatcaagccctccactttggcccaagaaaacctgaatcattcctggatg 18
>gb|AF417485.1| Populus tremuloides cellulose synthase (CesA2) gene, partial cds
Length = 1335
Score = 101 bits (51), Expect = 2e-019
Identities = 123/147 (83%)
Strand = Plus / Minus
Query: 1938 gcaccactttggccagcagttgcaagttcttgatggtggcttctttgttttgggagcatc 1997
||||||||| ||| |||||||||| || || | ||||| ||||||||||| ||||||||
Sbjct: 313 gcaccacttaggcaagcagttgcatgtcctcgttggtgatttctttgtttttggagcatc 254
Query: 1998 gtagccatataatgcctgccttctgaagacacatccagtacccacataaattgggccctg 2057
|| ||||| | ||| ||||||||||| ||||||||||| || ||||| || || || ||
Sbjct: 253 ataaccataaagtgcgtgccttctgaaaacacatccagtccctacatatataggtccttg 194
Query: 2058 gataccatccaaacctttcatgttgat 2084
|| ||||||||||||||||| |||||
Sbjct: 193 aatgccatccaaacctttcatattgat 167
>gb|AY573574.1| Populus tremula x Populus tremuloides cellulose synthase (CesA3-2)
mRNA, complete cds
Length = 3358
Score = 101 bits (51), Expect = 2e-019
Identities = 153/187 (81%)
Strand = Plus / Minus
Query: 2669 ttttgcagaaaggaacccatttctttgcaaattcagatgtttcagacaatgcttcaaatg 2728
|||||||||| |||||||| ||| ||||||| |||| |||||| || | ||||||||
Sbjct: 1087 ttttgcagaacggaacccacttccttgcaaactcagctgtttctaccagagattcaaatg 1028
Query: 2729 tcagcatggcagcaccatcatcagaaacgtagcacgaaaccttatcaactggataatcca 2788
||||| || |||||||||||||| |||||||| ||||| ||||| || ||||| ||||
Sbjct: 1027 aaagcatagctgcaccatcatcagacacgtagcaggaaactttatcgacgggatagtcca 968
Query: 2789 ccgaaaggatagatagaacagtattagcagtgaccaatggaggttccttcaagggatcaa 2848
| | |||||| || || || ||||| ||||||| ||||||||| || |||| |||||||
Sbjct: 967 cagcaaggatggaaaggactgtattggcagtgatcaatggagggtctttcagtggatcaa 908
Query: 2849 ccgtact 2855
| |||||
Sbjct: 907 cagtact 901
Score = 83.8 bits (42), Expect = 5e-014
Identities = 216/274 (78%)
Strand = Plus / Minus
Query: 1379 acccataccagagagggcagtggttgctgaagaaaatttcaattgaaccaagagcccacc 1438
|||| |||||||| || ||||| |||| ||||||||||| | |||||||||||||| |
Sbjct: 2338 acccgtaccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatc 2279
Query: 1439 gaagaacctggtgaagacgatcggaaagattgagaggtgcggaacctttgaaggcggccc 1498
| || |||||||| | | ||| || || |||| ||||| || || ||||| || | ||
Sbjct: 2278 ggaggacctggtgcaatctatcagacaggttgatgggtgcagatccgttgaacgcaggcc 2219
Query: 1499 gtttaggtatgcagtaaattgaccgccaaccatggcagtgcatcttaaacccagtaagaa 1558
| || |||||||||||||| | ||| || ||||||||||||| || ||| | | |
Sbjct: 2218 ttacgggcatgcagtaaattgatctccatccgcggcagtgcatcttgaagccacttaaga 2159
Query: 1559 tatcttctgtgactgatccataaatccaaccaatatcttttccccagcctgttttgtctt 1618
|||| || |||||||| ||||| ||||||||||| ||||||||||| | || || ||||
Sbjct: 2158 tatcctcagtgactgacccatagatccaaccaatctcttttccccattcagtcttctctt 2099
Query: 1619 catatccacaactgatgacatgtatagcttcctt 1652
|||| ||||| | ||||||||| || ||||||||
Sbjct: 2098 catagccacagccgatgacatgaattgcttcctt 2065
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 2413 ccaaggaaaacctgaatcattccaggatgatcacggacattatttccgggccatggagtt 2472
|||||||| ||||||||||| ||||| |||||||| ||||| || ||||| || |||
Sbjct: 1343 ccaaggaagacctgaatcatgccagggtgatcacgtgtgttattcccaggccaaggtgtt 1284
Query: 2473 ccatcctgcattgtccatccttcctcagg 2501
||||| ||||| ||||||||||| |||||
Sbjct: 1283 ccatcttgcatagtccatccttcttcagg 1255
>gb|CA930801.1|CA930801 MTU2TA.P10.D08 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 530
Score = 99.6 bits (50), Expect = 8e-019
Identities = 284/362 (78%)
Strand = Plus / Plus
Query: 2023 aagacacatccagtacccacataaattgggccctggataccatccaaacctttcatgttg 2082
|||||||||||||| |||||||| | || || || |||||||||||||| ||| |||
Sbjct: 161 aagacacatccagtgcccacatagacaggtccttgaataccatccaaacccctcaagttt 220
Query: 2083 atatcgaaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaat 2142
||||| || || ||| ||| | || ||||||||||||| ||||| |||||||||
Sbjct: 221 atatcaaagaacacagtattgcgattggcatatcgatcattcttgtcaatgccatcaaat 280
Query: 2143 ctttgaggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacac 2202
||||| ||||| || |||||||| || | |||||||| |||||||||||| ||||||
Sbjct: 281 ctttgtggaaattgaacatagcagacatgttttccaagattaggatccatcatgaaacac 340
Query: 2203 attgcttcctttatagccttactattattgatatagtgatcacaatccaagttcagcaaa 2262
|| ||||| | | ||||| ||||| || | ||||||||||| || | |||| |||
Sbjct: 341 atagcttctctcaaagcctcgctattgtttacgtagtgatcacagtcaagattcaacaag 400
Query: 2263 taaggagcattagttagtacagcagagactcggaccaatgcattcatagcaccagccttc 2322
|||| |||||||||| ||||| || || || || | ||||||||| |||||||| |||
Sbjct: 401 aaaggcccattagttagcacagctgatacacgaacaagtgcattcatggcaccagctttc 460
Query: 2323 ttgtgatggttgtagcctggccgtttttctcttgaaacataaaccaatcgaggcagctca 2382
||||| || | | ||||||| || ||||| | ||||||||||| || || |||||||||
Sbjct: 461 ttgtggtgctggaagcctggacgcttttcacgagaaacataaactaaccgtggcagctca 520
Query: 2383 tt 2384
||
Sbjct: 521 tt 522
>gb|CF237222.1|CF237222 Ptajxtjxt3E10E1010 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 441
Score = 99.6 bits (50), Expect = 8e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 718 tcgatccggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaatgaca 777
||||| |||||||| |||| |||||||| ||||||| ||| | ||||| | | ||||
Sbjct: 220 tcgattcggacccatagcaaggagaagatggaagccaagagcactgaccatatgacgaca 161
Query: 778 atcgttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacg 837
|| || || |||||||| |||||||| | ||||| |||||||| ||||| ||||||||
Sbjct: 160 atagtgggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatggaca 101
Query: 838 atcacccaaaatgcaaagaagagcttcccgaacagggggccccatgattcatatccgttg 897
|||||||| || ||||||||||||||||| || || || |||||||| | ||| ||||||
Sbjct: 100 atcacccagaaggcaaagaagagcttcccaaatagaggtccccatgactgatacccgttg 41
Query: 898 tt 899
||
Sbjct: 40 tt 39
>gb|DV465848.1|DV465848 MTUNUL1.P43.H11 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 879
Score = 99.6 bits (50), Expect = 8e-019
Identities = 218/274 (79%)
Strand = Plus / Minus
Query: 1379 acccataccagagagggcagtggttgctgaagaaaatttcaattgaaccaagagcccacc 1438
|||| |||||||| || ||||| |||| ||||||||||| | |||||||||||||| |
Sbjct: 714 acccgtaccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatc 655
Query: 1439 gaagaacctggtgaagacgatcggaaagattgagaggtgcggaacctttgaaggcggccc 1498
| || |||||||| | | ||| || || |||| ||||| || |||||||| || | ||
Sbjct: 654 ggaggacctggtgcaatctatcagacaggttgatgggtgcagatcctttgaatgcaggcc 595
Query: 1499 gtttaggtatgcagtaaattgaccgccaaccatggcagtgcatcttaaacccagtaagaa 1558
| || |||||||||||||| | ||| || ||||||||||||| |||||| | | |
Sbjct: 594 ttacgggcatgcagtaaattgatctccatcctcggcagtgcatcttgaacccacttaaga 535
Query: 1559 tatcttctgtgactgatccataaatccaaccaatatcttttccccagcctgttttgtctt 1618
|||| || |||||||| ||||| ||||||||||| ||||||||||| | || || ||||
Sbjct: 534 tatcctcagtgactgaaccatatatccaaccaatctcttttccccattcagtcttctctt 475
Query: 1619 catatccacaactgatgacatgtatagcttcctt 1652
|||| ||||| | ||||||||| || ||||||||
Sbjct: 474 catagccacagccgatgacatgaattgcttcctt 441
>gb|DV466748.1|DV466748 MTUNUL1.P9.G02 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 831
Score = 99.6 bits (50), Expect = 8e-019
Identities = 218/274 (79%)
Strand = Plus / Minus
Query: 1379 acccataccagagagggcagtggttgctgaagaaaatttcaattgaaccaagagcccacc 1438
|||| |||||||| || ||||| |||| ||||||||||| | |||||||||||||| |
Sbjct: 484 acccgtaccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatc 425
Query: 1439 gaagaacctggtgaagacgatcggaaagattgagaggtgcggaacctttgaaggcggccc 1498
| || |||||||| | | ||| || || |||| ||||| || |||||||| || | ||
Sbjct: 424 ggaggacctggtgcaatctatcagacaggttgatgggtgcagatcctttgaatgcaggcc 365
Query: 1499 gtttaggtatgcagtaaattgaccgccaaccatggcagtgcatcttaaacccagtaagaa 1558
| || |||||||||||||| | ||| || ||||||||||||| |||||| | | |
Sbjct: 364 ttacgggcatgcagtaaattgatctccatcctcggcagtgcatcttgaacccacttaaga 305
Query: 1559 tatcttctgtgactgatccataaatccaaccaatatcttttccccagcctgttttgtctt 1618
|||| || |||||||| ||||| ||||||||||| ||||||||||| | || || ||||
Sbjct: 304 tatcctcagtgactgaaccatatatccaaccaatctcttttccccattcagtcttctctt 245
Query: 1619 catatccacaactgatgacatgtatagcttcctt 1652
|||| ||||| | ||||||||| || ||||||||
Sbjct: 244 catagccacagccgatgacatgaattgcttcctt 211
>gb|CK107258.1|CK107258 UB51DPD11.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB51DPD11 5', mRNA sequence
Length = 596
Score = 95.6 bits (48), Expect = 1e-017
Identities = 127/152 (83%), Gaps = 1/152 (0%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacggacattatttccgggccatggagttccatcc-tg 2480
||||| |||||||| || ||||| | | ||||||||| |||||||||||||||||| ||
Sbjct: 362 acctggatcattcctgggtgatccctgggattatttccaggccatggagttccatccgtg 303
Query: 2481 cattgtccatccttcctcaggaaccttttgggctttagcaaccaaggcattgattctgac 2540
||||||||| ||||| || || | ||| || ||||| ||||| | |||||||| | ||
Sbjct: 302 cattgtccaaccttcttctggcatcttctgagctttggcaacaagagcattgatccgcac 243
Query: 2541 cttgaattcctcatactctctcttcattgctc 2572
||||||||| ||||| ||||||||||||||||
Sbjct: 242 cttgaattcttcatattctctcttcattgctc 211
>gb|CK320732.1|CK320732 X9SP01b11 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 769
Score = 95.6 bits (48), Expect = 1e-017
Identities = 87/100 (87%)
Strand = Plus / Minus
Query: 1078 tggaacacagcaaagagatgtgaagacacgcctccaatgacccaaaactgctcgtttctc 1137
||||| |||||||||||||| | ||||| |||||||| ||||| ||||| || || |||
Sbjct: 342 tggaagacagcaaagagatgagctgacacacctccaataacccagaactgttcattcctc 283
Query: 1138 caccagtcatcgatgcctacaccactccatctcatttcca 1177
||||| |||||||| || ||||||||||||||||||||||
Sbjct: 282 caccattcatcgatcccaacaccactccatctcatttcca 243
Score = 50.1 bits (25), Expect = 6e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 807 cagacccttgaggaacgggtaaagatggacgatcacccaaaatgcaaagaagagctt 863
||||||||||||||| || |||||||| | |||||||| || |||||||| |||||
Sbjct: 617 cagacccttgaggaaaggataaagatgaataatcacccagaaagcaaagaaaagctt 561
>gb|AJ774508.1|AJ774508 AJ774508 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300021B12F1, mRNA sequence
Length = 655
Score = 95.6 bits (48), Expect = 1e-017
Identities = 135/164 (82%)
Strand = Plus / Minus
Query: 721 atccggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaatgacaatc 780
|||||||||||||||| ||||| || ||||||| ||| | ||||| | || || ||
Sbjct: 569 atccggacccaaagcaaggagaaaatggaagccaagagcactgaccatataaccactata 510
Query: 781 gttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacgatc 840
|| || |||||||| |||||||| | ||||| |||||||| ||||| |||||||| |||
Sbjct: 509 gtcggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatc 450
Query: 841 acccaaaatgcaaagaagagcttcccgaacagggggccccatga 884
||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 449 acccagaaggcaaagaagagcttcccgaatagaggtccccatga 406
Score = 42.1 bits (21), Expect = 0.16
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 1117 acccaaaactgctcgtttctccaccagtcatcgatgcctacaccactccatct 1169
||||| || ||||||||||||||||| || || |||| ||| || ||||||||
Sbjct: 173 acccagaattgctcgtttctccaccattcctcaatgcttactccgctccatct 121
>gb|AJ775294.1|AJ775294 AJ775294 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300030F05F1, mRNA sequence
Length = 385
Score = 95.6 bits (48), Expect = 1e-017
Identities = 135/164 (82%)
Strand = Plus / Minus
Query: 721 atccggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaatgacaatc 780
|||||||||||||||| ||||| || ||||||| ||| | ||||| | || || ||
Sbjct: 300 atccggacccaaagcaaggagaaaatggaagccaagagcactgaccatataaccactata 241
Query: 781 gttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacgatc 840
|| || |||||||| |||||||| | ||||| |||||||| ||||| |||||||| |||
Sbjct: 240 gtcggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatc 181
Query: 841 acccaaaatgcaaagaagagcttcccgaacagggggccccatga 884
||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 180 acccagaaggcaaagaagagcttcccgaatagaggtccccatga 137
>gb|DT509821.1|DT509821 WS02424.BR_N10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_N10 5', mRNA sequence
Length = 723
Score = 95.6 bits (48), Expect = 1e-017
Identities = 87/100 (87%)
Strand = Plus / Minus
Query: 1078 tggaacacagcaaagagatgtgaagacacgcctccaatgacccaaaactgctcgtttctc 1137
||||| |||||||||||||| | ||||| |||||||| ||||| ||||| || || |||
Sbjct: 509 tggaagacagcaaagagatgagctgacacacctccaataacccagaactgttcattcctc 450
Query: 1138 caccagtcatcgatgcctacaccactccatctcatttcca 1177
||||| |||||||| || ||||||||||||||||||||||
Sbjct: 449 caccattcatcgatcccaacaccactccatctcatttcca 410
>gb|AF072131.1|AF072131 Populus tremuloides secondary xylem cellulose synthase (celA) mRNA,
complete cds
Length = 3232
Score = 95.6 bits (48), Expect = 1e-017
Identities = 155/188 (82%), Gaps = 2/188 (1%)
Strand = Plus / Minus
Query: 2669 ttttgcagaaaggaacccatttctttgcaaattcagatgtttcagacaat-gcttcaaat 2727
|||||||||| |||||||| ||| ||||||| |||| |||||| |||| | |||||||
Sbjct: 1026 ttttgcagaacggaacccacttccttgcaaactcagctgtttct-acaagagattcaaat 968
Query: 2728 gtcagcatggcagcaccatcatcagaaacgtagcacgaaaccttatcaactggataatcc 2787
| ||||| || |||||||||||||| |||||||| || || ||||| || ||||| |||
Sbjct: 967 gaaagcatagctgcaccatcatcagacacgtagcaggagactttatcgacgggatagtcc 908
Query: 2788 accgaaaggatagatagaacagtattagcagtgaccaatggaggttccttcaagggatca 2847
|| | |||||| || || || ||||| ||||||| |||||| |||||||||| ||||||
Sbjct: 907 acagcaaggatggaaaggactgtattggcagtgatcaatggcggttccttcagcggatca 848
Query: 2848 accgtact 2855
|| |||||
Sbjct: 847 acagtact 840
Score = 75.8 bits (38), Expect = 1e-011
Identities = 215/274 (78%)
Strand = Plus / Minus
Query: 1379 acccataccagagagggcagtggttgctgaagaaaatttcaattgaaccaagagcccacc 1438
|||| |||||||| || ||||| |||| ||||||||||| | |||||||||||||| |
Sbjct: 2280 acccgtaccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatc 2221
Query: 1439 gaagaacctggtgaagacgatcggaaagattgagaggtgcggaacctttgaaggcggccc 1498
| || |||||||| | | ||| || || |||| ||||| || |||||||| || | ||
Sbjct: 2220 ggaggacctggtgcaatctatcagacaggttgatgggtgcagatcctttgaatgcaggcc 2161
Query: 1499 gtttaggtatgcagtaaattgaccgccaaccatggcagtgcatcttaaacccagtaagaa 1558
| || |||||||||||||| | ||| || ||||||||||||| || ||| | | |
Sbjct: 2160 ttacgggcatgcagtaaattgatctccatcctcggcagtgcatcttgaagccacttaaga 2101
Query: 1559 tatcttctgtgactgatccataaatccaaccaatatcttttccccagcctgttttgtctt 1618
|||| || |||||||| ||||| ||||||||||| | ||||||||| | || || ||||
Sbjct: 2100 tatcctcagtgactgacccatatatccaaccaatctgttttccccattcagtcttctctt 2041
Query: 1619 catatccacaactgatgacatgtatagcttcctt 1652
|||| ||||| | |||||| || || ||||||||
Sbjct: 2040 catagccacagccgatgacttgaatcgcttcctt 2007
Score = 52.0 bits (26), Expect = 2e-004
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 2413 ccaaggaaaacctgaatcattcc-aggatgatcacggacattatttccgggccatggagt 2471
|||||||| ||||||||||| || ||| |||||||| ||||| || ||||| || ||
Sbjct: 1283 ccaaggaagacctgaatcatgcccagggtgatcacgtgtgttattcccaggccaaggtgt 1224
Query: 2472 tccatcctgcattgtccatccttcctcagg 2501
|||||| ||||| ||||||||||| |||||
Sbjct: 1223 tccatcttgcatagtccatccttcttcagg 1194
>gb|DQ004570.1| Populus tomentosa cellulose synthase (cesa1) mRNA, complete cds
Length = 3215
Score = 95.6 bits (48), Expect = 1e-017
Identities = 155/188 (82%), Gaps = 2/188 (1%)
Strand = Plus / Minus
Query: 2669 ttttgcagaaaggaacccatttctttgcaaattcagatgtttcagacaat-gcttcaaat 2727
|||||||||| |||||||| ||| ||||||| |||| |||||| |||| | |||||||
Sbjct: 1009 ttttgcagaacggaacccacttccttgcaaactcagctgtttct-acaagagattcaaat 951
Query: 2728 gtcagcatggcagcaccatcatcagaaacgtagcacgaaaccttatcaactggataatcc 2787
| ||||| || |||||||||||||| |||||||| || || ||||| || ||||| |||
Sbjct: 950 gaaagcatagctgcaccatcatcagacacgtagcaggagactttatcgacgggatagtcc 891
Query: 2788 accgaaaggatagatagaacagtattagcagtgaccaatggaggttccttcaagggatca 2847
|| | |||||| || || || ||||| ||||||| |||||| |||||||||| ||||||
Sbjct: 890 acagcaaggatggaaaggactgtattggcagtgatcaatggcggttccttcagcggatca 831
Query: 2848 accgtact 2855
|| |||||
Sbjct: 830 acagtact 823
Score = 75.8 bits (38), Expect = 1e-011
Identities = 215/274 (78%)
Strand = Plus / Minus
Query: 1379 acccataccagagagggcagtggttgctgaagaaaatttcaattgaaccaagagcccacc 1438
|||| |||||||| || ||||| |||| ||||||||||| | |||||||||||||| |
Sbjct: 2263 acccgtaccagaggggacagtgtctgctaaagaaaatttccacagaaccaagagcccatc 2204
Query: 1439 gaagaacctggtgaagacgatcggaaagattgagaggtgcggaacctttgaaggcggccc 1498
| || |||||||| | | ||| || || |||| ||||| || |||||||| || | ||
Sbjct: 2203 ggaggacctggtgcaatctatcagacaggttgatgggtgcagatcctttgaatgcaggcc 2144
Query: 1499 gtttaggtatgcagtaaattgaccgccaaccatggcagtgcatcttaaacccagtaagaa 1558
| || |||||||||||||| | ||| || ||||||||||||| || ||| | | |
Sbjct: 2143 ttacgggcatgcagtaaattgatctccatcctcggcagtgcatcttgaagccacttaaga 2084
Query: 1559 tatcttctgtgactgatccataaatccaaccaatatcttttccccagcctgttttgtctt 1618
|||| || |||||||| ||||| ||||||||||| | ||||||||| | || || ||||
Sbjct: 2083 tatcctcagtgactgacccatatatccaaccaatctgttttccccattcagtcttctctt 2024
Query: 1619 catatccacaactgatgacatgtatagcttcctt 1652
|||| ||||| | |||||| || || ||||||||
Sbjct: 2023 catagccacagccgatgacttgaatcgcttcctt 1990
Score = 52.0 bits (26), Expect = 2e-004
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 2413 ccaaggaaaacctgaatcattcc-aggatgatcacggacattatttccgggccatggagt 2471
|||||||| ||||||||||| || ||| |||||||| ||||| || ||||| || ||
Sbjct: 1266 ccaaggaagacctgaatcatgcccagggtgatcacgtgtgttattcccaggccaaggtgt 1207
Query: 2472 tccatcctgcattgtccatccttcctcagg 2501
|||||| ||||| ||||||||||| |||||
Sbjct: 1206 tccatcttgcatagtccatccttcttcagg 1177
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 512,098
Number of Sequences: 369679
Number of extensions: 512098
Number of successful extensions: 143245
Number of sequences better than 0.5: 152
Number of HSP's better than 0.5 without gapping: 143
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 142647
Number of HSP's gapped (non-prelim): 563
length of query: 3878
length of database: 203,408,664
effective HSP length: 20
effective length of query: 3858
effective length of database: 196,015,084
effective search space: 756226194072
effective search space used: 756226194072
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)