BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161238.2.3
(672 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU827871.1|BU827871 K010P53P Populus apical shoot cDNA l... 54 7e-006
gb|BU828335.1|BU828335 K021P17P Populus apical shoot cDNA l... 54 7e-006
gb|CA928870.1|CA928870 MTU6TR.P7.H01 Aspen root cDNA Librar... 54 7e-006
gb|CA931925.1|CA931925 MTU4TA.P24.F07 Aspen apex cDNA Libra... 54 7e-006
gb|CK115506.1|CK115506 Y010G11 Populus infected leaf substr... 54 7e-006
gb|DV464561.1|DV464561 MTUNUL1.P29.B02 NUL Populus fremonti... 54 7e-006
gb|BU828713.1|BU828713 K027P33P Populus apical shoot cDNA l... 52 3e-005
gb|CX658343.1|CX658343 PO01034A06 Poplar SC cDNA library Po... 48 4e-004
gb|CX658486.1|CX658486 PO01035F05 Poplar SC cDNA library Po... 48 4e-004
gb|CK114946.1|CK114946 Y001G08 Populus infected leaf substr... 46 0.002
gb|DN493331.1|DN493331 Y001G08.3pR Populus infected leaf su... 46 0.002
gb|DN503311.1|DN503311 Y001G08.5pR Populus infected leaf su... 46 0.002
gb|DT501091.1|DT501091 WS0131.BR_H07 PTxD-IL-FL-A-4 Populus... 40 0.11
gb|BU816847.1|BU816847 UA10BPA08 Populus tremula cambium cD... 38 0.42
gb|BU818936.1|BU818936 UA37BPD06 Populus tremula cambium cD... 38 0.42
gb|BU818950.1|BU818950 UA37BPE08 Populus tremula cambium cD... 38 0.42
gb|BU819848.1|BU819848 UA48BPC10 Populus tremula cambium cD... 38 0.42
gb|BU819999.1|BU819999 UA50BPB05 Populus tremula cambium cD... 38 0.42
gb|BU868819.1|BU868819 M122E12 Populus flower cDNA library ... 38 0.42
gb|BU879870.1|BU879870 UM38TE07 Populus flower cDNA library... 38 0.42
gb|BU879933.1|BU879933 UM39TD06 Populus flower cDNA library... 38 0.42
gb|BU881008.1|BU881008 UM57TF04 Populus flower cDNA library... 38 0.42
gb|BU881678.1|BU881678 UM66TA11 Populus flower cDNA library... 38 0.42
gb|BU882557.1|BU882557 UM79TD07 Populus flower cDNA library... 38 0.42
gb|BU882638.1|BU882638 UM80TD01 Populus flower cDNA library... 38 0.42
gb|BU882769.1|BU882769 UM82TA01 Populus flower cDNA library... 38 0.42
gb|CA924071.1|CA924071 MTU7CL.P1.D04 Aspen leaf cDNA Librar... 38 0.42
gb|CA924288.1|CA924288 MTU7CL.P3.H12 Aspen leaf cDNA Librar... 38 0.42
gb|CA927240.1|CA927240 MTU6CR.P6.F08 Aspen root cDNA Librar... 38 0.42
gb|CA821239.1|CA821239 RA01E01 three-week-old roots incubat... 38 0.42
gb|CK095940.1|CK095940 UA37BPE08.3pR Populus dormant cambiu... 38 0.42
gb|CK105758.1|CK105758 UA37BPE08.5pR Populus dormant cambiu... 38 0.42
gb|CK116138.1|CK116138 Y020E02 Populus infected leaf substr... 38 0.42
gb|CN521818.1|CN521818 GQ0114.B3_I13 GQ011 Populus trichoca... 38 0.42
gb|AJ776988.1|AJ776988 AJ776988 Populus euphratica root 3-6... 38 0.42
gb|AJ779643.1|AJ779643 AJ779643 Populus euphratica root 3-6... 38 0.42
gb|CV258730.1|CV258730 WS0201.B21_F19 PTxN-IB-N-A-11 Populu... 38 0.42
gb|CV259015.1|CV259015 WS02010.B21_C05 PTxN-IB-N-A-11 Popul... 38 0.42
gb|CV259166.1|CV259166 WS02010.B21_J03 PTxN-IB-N-A-11 Popul... 38 0.42
gb|CV263010.1|CV263010 WS02020.B21_B18 PTxN-IB-N-A-11 Popul... 38 0.42
gb|CV263876.1|CV263876 WS02023.B21_A10 PTxN-IB-N-A-11 Popul... 38 0.42
gb|CV265128.1|CV265128 WS02026.B21_G13 PTxN-IB-N-A-11 Popul... 38 0.42
gb|CV266149.1|CV266149 WS02029.B21_D20 PTxN-IB-N-A-11 Popul... 38 0.42
gb|CV268365.1|CV268365 WS0205.B21_E12 PTxN-IB-N-A-11 Populu... 38 0.42
gb|CV270689.1|CV270689 WS0152.B21_K16 PTxN-IB-A-6 Populus t... 38 0.42
gb|CV271459.1|CV271459 WS0154.B21_M06 PTxN-IB-A-6 Populus t... 38 0.42
gb|CV276982.1|CV276982 WS0142.B21_F10 PTxD-IL-A-5 Populus t... 38 0.42
gb|CV277022.1|CV277022 WS0142.B21_H02 PTxD-IL-A-5 Populus t... 38 0.42
gb|CV277136.1|CV277136 WS0142.B21_M03 PTxD-IL-A-5 Populus t... 38 0.42
gb|CV277215.1|CV277215 WS0142.B21_P13 PTxD-IL-A-5 Populus t... 38 0.42
gb|CV277719.1|CV277719 WS0144.B21_F22 PTxD-IL-A-5 Populus t... 38 0.42
gb|CV278454.1|CV278454 WS0146.B21_H02 PTxD-IL-A-5 Populus t... 38 0.42
gb|CV279242.1|CV279242 WS0148.B21_O02 PTxD-IL-A-5 Populus t... 38 0.42
gb|CV280349.1|CV280349 WS0135.B21_O22 PTxD-IL-FL-A-4 Populu... 38 0.42
gb|CV281293.1|CV281293 WS0181.B21_I16 PTxD-IL-N-A-9 Populus... 38 0.42
gb|CV281351.1|CV281351 WS0181.B21_L03 PTxD-IL-N-A-9 Populus... 38 0.42
gb|CV281852.1|CV281852 WS0183.B21_A15 PTxD-IL-N-A-9 Populus... 38 0.42
gb|CV282141.1|CV282141 WS0183.B21_N05 PTxD-IL-N-A-9 Populus... 38 0.42
gb|CX168199.1|CX168199 G06_69-41_14.ab1 leaf inoculated wit... 38 0.42
gb|CX174693.1|CX174693 H04_69-61_16.ab1 leaf inoculated wit... 38 0.42
gb|CX655836.1|CX655836 PO02040G07 Poplar SC cDNA library Po... 38 0.42
gb|CX658423.1|CX658423 PO01034H10 Poplar SC cDNA library Po... 38 0.42
gb|CX659039.1|CX659039 PO01025G05 Poplar SC cDNA library Po... 38 0.42
gb|CX659804.1|CX659804 PO01014C12 Poplar SC cDNA library Po... 38 0.42
gb|DN485029.1|DN485029 M101D01.3pR Populus female catkins c... 38 0.42
gb|DN485254.1|DN485254 M122E12.3pR Populus female catkins c... 38 0.42
gb|DN494715.1|DN494715 M122E12.5pR Populus female catkins c... 38 0.42
gb|DT469655.1|DT469655 WS01918.C21_H15 PT-DX-N-A-10 Populus... 38 0.42
gb|DT477391.1|DT477391 WS02519.BR_N01 PT-MB-N-A-15 Populus ... 38 0.42
gb|DT482435.1|DT482435 WS02519.B21_N01 PT-MB-N-A-15 Populus... 38 0.42
gb|DT482778.1|DT482778 WS02520.B21_M04 PT-MB-N-A-15 Populus... 38 0.42
gb|DT503232.1|DT503232 WS0135.BR_O22 PTxD-IL-FL-A-4 Populus... 38 0.42
gb|DT504019.1|DT504019 WS0138.BR_K19 PTxD-IL-FL-A-4 Populus... 38 0.42
gb|DT504406.1|DT504406 WS01313.B21_D05 PTxD-IL-FL-A-4 Popul... 38 0.42
gb|DT504705.1|DT504705 WS01314.B21_G18 PTxD-IL-FL-A-4 Popul... 38 0.42
gb|DT521601.1|DT521601 WS02034.B21_L18 PTxN-IB-N-A-11 Popul... 38 0.42
gb|DT522012.1|DT522012 WS02035.B21_N03 PTxN-IB-N-A-11 Popul... 38 0.42
gb|DT524138.1|DT524138 WS02041.C21.1_K22 PTxN-IB-N-A-11 Pop... 38 0.42
gb|DV464270.1|DV464270 MTUNUL1.P25.D08 NUL Populus fremonti... 38 0.42
gb|DV464681.1|DV464681 MTUNUL1.P3.E07 NUL Populus fremontii... 38 0.42
gb|DV464969.1|DV464969 MTUNUL1.P33.B05 NUL Populus fremonti... 38 0.42
gb|M25337.1|POPCHIB Populus x generosa clone win8. chitinas... 38 0.42
emb|X59995.1|PTGWIN62B P.trichocarpa chitinase gene gwin6.2... 38 0.42
>gb|BU827871.1|BU827871 K010P53P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 580
Score = 54.0 bits (27), Expect = 7e-006
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtgacgtg 670
||||||||||| ||||||||||| |||||||||||
Sbjct: 55 atgtagcagaagtgtccggtctcatgcgtgacgtg 21
>gb|BU828335.1|BU828335 K021P17P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 553
Score = 54.0 bits (27), Expect = 7e-006
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtgacgtg 670
||||||||||| ||||||||||| |||||||||||
Sbjct: 263 atgtagcagaagtgtccggtctcatgcgtgacgtg 229
>gb|CA928870.1|CA928870 MTU6TR.P7.H01 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 678
Score = 54.0 bits (27), Expect = 7e-006
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtgacgtg 670
||||||||||| ||||||||||| |||||||||||
Sbjct: 548 atgtagcagaagtgtccggtctcatgcgtgacgtg 582
>gb|CA931925.1|CA931925 MTU4TA.P24.F07 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 657
Score = 54.0 bits (27), Expect = 7e-006
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtgacgtg 670
||||||||||| ||||||||||| |||||||||||
Sbjct: 580 atgtagcagaagtgtccggtctcatgcgtgacgtg 614
>gb|CK115506.1|CK115506 Y010G11 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y010G11 5', mRNA sequence
Length = 624
Score = 54.0 bits (27), Expect = 7e-006
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtgacgtg 670
||||||||||| ||||||||||| |||||||||||
Sbjct: 594 atgtagcagaagtgtccggtctcatgcgtgacgtg 560
>gb|DV464561.1|DV464561 MTUNUL1.P29.B02 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 784
Score = 54.0 bits (27), Expect = 7e-006
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtgacgtg 670
||||||||||| ||||||||||| |||||||||||
Sbjct: 478 atgtagcagaagtgtccggtctcatgcgtgacgtg 444
>gb|BU828713.1|BU828713 K027P33P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 608
Score = 52.0 bits (26), Expect = 3e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtgacgt 669
||||||||||| ||||||||||| ||||||||||
Sbjct: 238 atgtagcagaagtgtccggtctcatgcgtgacgt 205
>gb|CX658343.1|CX658343 PO01034A06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01034A06 5', mRNA sequence
Length = 594
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtgac 667
||||||||||| ||||||||||| ||||||||
Sbjct: 472 atgtagcagaagtgtccggtctcatgcgtgac 441
>gb|CX658486.1|CX658486 PO01035F05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01035F05 5', mRNA sequence
Length = 717
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtgac 667
||||||||||| ||||||||||| ||||||||
Sbjct: 141 atgtagcagaagtgtccggtctcatgcgtgac 110
>gb|CK114946.1|CK114946 Y001G08 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y001G08 5', mRNA sequence
Length = 633
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtgacgtg 670
|||| |||||| ||||||||||| |||||||||||
Sbjct: 450 atgtggcagaagtgtccggtctcatgcgtgacgtg 416
>gb|DN493331.1|DN493331 Y001G08.3pR Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y001G08 3', mRNA sequence
Length = 779
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtgacgtg 670
|||| |||||| ||||||||||| |||||||||||
Sbjct: 483 atgtggcagaagtgtccggtctcatgcgtgacgtg 517
>gb|DN503311.1|DN503311 Y001G08.5pR Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y001G08 5', mRNA sequence
Length = 772
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtgacgtg 670
|||| |||||| ||||||||||| |||||||||||
Sbjct: 435 atgtggcagaagtgtccggtctcatgcgtgacgtg 401
>gb|DT501091.1|DT501091 WS0131.BR_H07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_H07 5', mRNA sequence
Length = 680
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 515 cccgtagttgtagttccacg 534
||||||||||||||||||||
Sbjct: 519 cccgtagttgtagttccacg 500
>gb|BU816847.1|BU816847 UA10BPA08 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 455
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 514 gcccgtagttgtagttcca 532
|||||||||||||||||||
Sbjct: 24 gcccgtagttgtagttcca 6
>gb|BU818936.1|BU818936 UA37BPD06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 586
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 514 gcccgtagttgtagttcca 532
|||||||||||||||||||
Sbjct: 133 gcccgtagttgtagttcca 115
>gb|BU818950.1|BU818950 UA37BPE08 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 591
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 514 gcccgtagttgtagttcca 532
|||||||||||||||||||
Sbjct: 111 gcccgtagttgtagttcca 93
>gb|BU819848.1|BU819848 UA48BPC10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 485
Score = 38.2 bits (19), Expect = 0.42
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 639 tagcagaaatgtccggtctcgtg 661
|||||||| ||||||||||||||
Sbjct: 92 tagcagaagtgtccggtctcgtg 70
>gb|BU819999.1|BU819999 UA50BPB05 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 576
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 514 gcccgtagttgtagttcca 532
|||||||||||||||||||
Sbjct: 320 gcccgtagttgtagttcca 302
>gb|BU868819.1|BU868819 M122E12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 679
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 171 cccgtagttgtagttccac 153
>gb|BU879870.1|BU879870 UM38TE07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 604
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 126 cccgtagttgtagttccac 108
>gb|BU879933.1|BU879933 UM39TD06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 573
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 333 cccgtagttgtagttccac 315
>gb|BU881008.1|BU881008 UM57TF04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 551
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 44 cccgtagttgtagttccac 26
>gb|BU881678.1|BU881678 UM66TA11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 563
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 323 cccgtagttgtagttccac 305
>gb|BU882557.1|BU882557 UM79TD07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 603
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 595 cccgtagttgtagttccac 577
>gb|BU882638.1|BU882638 UM80TD01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 584
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 514 gcccgtagttgtagttcca 532
|||||||||||||||||||
Sbjct: 139 gcccgtagttgtagttcca 121
>gb|BU882769.1|BU882769 UM82TA01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 501
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 514 gcccgtagttgtagttcca 532
|||||||||||||||||||
Sbjct: 44 gcccgtagttgtagttcca 26
>gb|CA924071.1|CA924071 MTU7CL.P1.D04 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 648
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 514 gcccgtagttgtagttcca 532
|||||||||||||||||||
Sbjct: 281 gcccgtagttgtagttcca 299
>gb|CA924288.1|CA924288 MTU7CL.P3.H12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 660
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 514 gcccgtagttgtagttcca 532
|||||||||||||||||||
Sbjct: 281 gcccgtagttgtagttcca 299
>gb|CA927240.1|CA927240 MTU6CR.P6.F08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 653
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 514 gcccgtagttgtagttcca 532
|||||||||||||||||||
Sbjct: 281 gcccgtagttgtagttcca 299
>gb|CA821239.1|CA821239 RA01E01 three-week-old roots incubated in 5uM indole-3-acetic acid
24h before harvesting Populus alba x Populus tremula
cDNA 5', mRNA sequence
Length = 650
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 514 gcccgtagttgtagttcca 532
|||||||||||||||||||
Sbjct: 156 gcccgtagttgtagttcca 138
>gb|CK095940.1|CK095940 UA37BPE08.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA37BPE08 3', mRNA sequence
Length = 583
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 514 gcccgtagttgtagttcca 532
|||||||||||||||||||
Sbjct: 471 gcccgtagttgtagttcca 489
>gb|CK105758.1|CK105758 UA37BPE08.5pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA37BPE08 5', mRNA sequence
Length = 219
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 514 gcccgtagttgtagttcca 532
|||||||||||||||||||
Sbjct: 91 gcccgtagttgtagttcca 73
>gb|CK116138.1|CK116138 Y020E02 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y020E02 5', mRNA sequence
Length = 404
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 514 gcccgtagttgtagttcca 532
|||||||||||||||||||
Sbjct: 50 gcccgtagttgtagttcca 32
>gb|CN521818.1|CN521818 GQ0114.B3_I13 GQ011 Populus trichocarpa x Populus deltoides cDNA
clone GQ0114_I13 5', mRNA sequence
Length = 411
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 349 cccgtagttgtagttccac 331
>gb|AJ776988.1|AJ776988 AJ776988 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400021D05F1, mRNA sequence
Length = 670
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 514 gcccgtagttgtagttcca 532
|||||||||||||||||||
Sbjct: 205 gcccgtagttgtagttcca 187
>gb|AJ779643.1|AJ779643 AJ779643 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800004H09F1, mRNA sequence
Length = 704
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 514 gcccgtagttgtagttcca 532
|||||||||||||||||||
Sbjct: 631 gcccgtagttgtagttcca 613
>gb|CV258730.1|CV258730 WS0201.B21_F19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0201_F19 3', mRNA sequence
Length = 576
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 529 cccgtagttgtagttccac 547
>gb|CV259015.1|CV259015 WS02010.B21_C05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02010_C05 3', mRNA sequence
Length = 767
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 526 cccgtagttgtagttccac 544
>gb|CV259166.1|CV259166 WS02010.B21_J03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02010_J03 3', mRNA sequence
Length = 711
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 530 cccgtagttgtagttccac 548
>gb|CV263010.1|CV263010 WS02020.B21_B18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02020_B18 3', mRNA sequence
Length = 908
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 533 cccgtagttgtagttccac 551
>gb|CV263876.1|CV263876 WS02023.B21_A10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_A10 3', mRNA sequence
Length = 564
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 529 cccgtagttgtagttccac 547
>gb|CV265128.1|CV265128 WS02026.B21_G13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02026_G13 3', mRNA sequence
Length = 748
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 565 cccgtagttgtagttccac 583
>gb|CV266149.1|CV266149 WS02029.B21_D20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02029_D20 3', mRNA sequence
Length = 768
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 525 cccgtagttgtagttccac 543
>gb|CV268365.1|CV268365 WS0205.B21_E12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0205_E12 3', mRNA sequence
Length = 716
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 533 cccgtagttgtagttccac 551
>gb|CV270689.1|CV270689 WS0152.B21_K16 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0152_K16 3', mRNA sequence
Length = 908
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 506 cccgtagttgtagttccac 524
>gb|CV271459.1|CV271459 WS0154.B21_M06 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0154_M06 3', mRNA sequence
Length = 812
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 528 cccgtagttgtagttccac 546
>gb|CV276982.1|CV276982 WS0142.B21_F10 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_F10 3', mRNA sequence
Length = 672
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 523 cccgtagttgtagttccac 541
>gb|CV277022.1|CV277022 WS0142.B21_H02 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_H02 3', mRNA sequence
Length = 902
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 564 cccgtagttgtagttccac 582
>gb|CV277136.1|CV277136 WS0142.B21_M03 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_M03 3', mRNA sequence
Length = 941
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 530 cccgtagttgtagttccac 548
>gb|CV277215.1|CV277215 WS0142.B21_P13 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_P13 3', mRNA sequence
Length = 886
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 515 cccgtagttgtagttccac 533
|||||||||||||||||||
Sbjct: 529 cccgtagttgtagttccac 547
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 39,843
Number of Sequences: 369679
Number of extensions: 39843
Number of successful extensions: 9054
Number of sequences better than 0.5: 83
Number of HSP's better than 0.5 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8922
Number of HSP's gapped (non-prelim): 132
length of query: 672
length of database: 203,408,664
effective HSP length: 19
effective length of query: 653
effective length of database: 196,384,763
effective search space: 128239250239
effective search space used: 128239250239
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)