BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161238.2.2
(1186 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU867931.1|BU867931 M106A11 Populus flower cDNA library ... 40 0.19
gb|CA924907.1|CA924907 MTU7TL.P11.C09 Aspen leaf cDNA Libra... 40 0.19
gb|CA924998.1|CA924998 MTU7TL.P12.D05 Aspen leaf cDNA Libra... 40 0.19
gb|CA925006.1|CA925006 MTU7TL.P12.E01 Aspen leaf cDNA Libra... 40 0.19
gb|CA925300.1|CA925300 MTU7TL.P16.D01 Aspen leaf cDNA Libra... 40 0.19
gb|CA925421.1|CA925421 MTU7TL.P1.A06 Aspen leaf cDNA Librar... 40 0.19
gb|CA925543.1|CA925543 MTU7TL.P2.H11 Aspen leaf cDNA Librar... 40 0.19
gb|CA925547.1|CA925547 MTU7TL.P3.A03 Aspen leaf cDNA Librar... 40 0.19
gb|CA925569.1|CA925569 MTU7TL.P3.C03 Aspen leaf cDNA Librar... 40 0.19
gb|CA925777.1|CA925777 MTU7TL.P5.G06 Aspen leaf cDNA Librar... 40 0.19
gb|CA925836.1|CA925836 MTU7TL.P6.E05 Aspen leaf cDNA Librar... 40 0.19
gb|DT501091.1|DT501091 WS0131.BR_H07 PTxD-IL-FL-A-4 Populus... 40 0.19
gb|DV464943.1|DV464943 MTUNUL1.P32.G11 NUL Populus fremonti... 40 0.19
>gb|BU867931.1|BU867931 M106A11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 546
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 706 ttcaaggcggcgctctggttctggatga 733
|||||||| || ||||||||||||||||
Sbjct: 234 ttcaaggcagcactctggttctggatga 261
>gb|CA924907.1|CA924907 MTU7TL.P11.C09 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 645
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 706 ttcaaggcggcgctctggttctggatga 733
|||||||| || ||||||||||||||||
Sbjct: 212 ttcaaggcagcactctggttctggatga 185
>gb|CA924998.1|CA924998 MTU7TL.P12.D05 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 674
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 706 ttcaaggcggcgctctggttctggatga 733
|||||||| || ||||||||||||||||
Sbjct: 595 ttcaaggcagcactctggttctggatga 622
>gb|CA925006.1|CA925006 MTU7TL.P12.E01 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 660
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 706 ttcaaggcggcgctctggttctggatga 733
|||||||| || ||||||||||||||||
Sbjct: 591 ttcaaggcagcactctggttctggatga 618
>gb|CA925300.1|CA925300 MTU7TL.P16.D01 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 707
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 706 ttcaaggcggcgctctggttctggatga 733
|||||||| || ||||||||||||||||
Sbjct: 646 ttcaaggcagcactctggttctggatga 673
>gb|CA925421.1|CA925421 MTU7TL.P1.A06 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 766
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 706 ttcaaggcggcgctctggttctggatga 733
|||||||| || ||||||||||||||||
Sbjct: 212 ttcaaggcagcactctggttctggatga 185
>gb|CA925543.1|CA925543 MTU7TL.P2.H11 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 631
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 706 ttcaaggcggcgctctggttctggatga 733
|||||||| || ||||||||||||||||
Sbjct: 212 ttcaaggcagcactctggttctggatga 185
>gb|CA925547.1|CA925547 MTU7TL.P3.A03 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 710
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 706 ttcaaggcggcgctctggttctggatga 733
|||||||| || ||||||||||||||||
Sbjct: 638 ttcaaggcagcactctggttctggatga 665
>gb|CA925569.1|CA925569 MTU7TL.P3.C03 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 684
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 706 ttcaaggcggcgctctggttctggatga 733
|||||||| || ||||||||||||||||
Sbjct: 592 ttcaaggcagcactctggttctggatga 619
>gb|CA925777.1|CA925777 MTU7TL.P5.G06 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 706 ttcaaggcggcgctctggttctggatga 733
|||||||| || ||||||||||||||||
Sbjct: 213 ttcaaggcagcactctggttctggatga 186
>gb|CA925836.1|CA925836 MTU7TL.P6.E05 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 662
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 706 ttcaaggcggcgctctggttctggatga 733
|||||||| || ||||||||||||||||
Sbjct: 213 ttcaaggcagcactctggttctggatga 186
>gb|DT501091.1|DT501091 WS0131.BR_H07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_H07 5', mRNA sequence
Length = 680
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 614 cgtggaactacaactacggg 633
||||||||||||||||||||
Sbjct: 500 cgtggaactacaactacggg 519
>gb|DV464943.1|DV464943 MTUNUL1.P32.G11 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 917
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 706 ttcaaggcggcgctctggttctggatga 733
|||||||| || ||||||||||||||||
Sbjct: 688 ttcaaggcagcactctggttctggatga 715
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,736
Number of Sequences: 369679
Number of extensions: 73736
Number of successful extensions: 17180
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17154
Number of HSP's gapped (non-prelim): 26
length of query: 1186
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1167
effective length of database: 196,384,763
effective search space: 229181018421
effective search space used: 229181018421
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)