BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161200.2.1
(845 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU862701.1|BU862701 S019A04 Populus imbibed seed cDNA li... 72 4e-011
gb|BI127931.1|BI127931 G068P36Y Populus cambium cDNA librar... 64 9e-009
gb|BI128418.1|BI128418 G075P56Y Populus cambium cDNA librar... 64 9e-009
gb|BI128462.1|BI128462 G076P64Y Populus cambium cDNA librar... 64 9e-009
gb|BI130837.1|BI130837 G111P47Y Populus cambium cDNA librar... 64 9e-009
gb|BI131914.1|BI131914 G127P54Y Populus cambium cDNA librar... 64 9e-009
gb|BU888804.1|BU888804 P012G04 Populus petioles cDNA librar... 64 9e-009
gb|BU896200.1|BU896200 X037B03 Populus wood cDNA library Po... 64 9e-009
gb|BU897803.1|BU897803 X069H06 Populus wood cDNA library Po... 64 9e-009
gb|CF232330.1|CF232330 PtaJXO0009B6B0604 Poplar cDNA librar... 64 9e-009
gb|CF235915.1|CF235915 PtaJXT0028E1E0109 Poplar cDNA librar... 64 9e-009
gb|DN496569.1|DN496569 P078B11.5pR Populus petioles cDNA li... 64 9e-009
gb|AY535003.1| Populus tremuloides endo-1,4-beta-glucanase ... 64 9e-009
gb|AY660967.1| Populus tremula x Populus tremuloides Cel9A ... 64 9e-009
gb|AJ775074.1|AJ775074 AJ775074 Populus euphratica shoot 3-... 60 1e-007
gb|BU869339.1|BU869339 M128H12 Populus flower cDNA library ... 56 2e-006
gb|CA927392.1|CA927392 MTU6CR.P8.D11 Aspen root cDNA Librar... 56 2e-006
gb|CF235295.1|CF235295 PtaJXT0021B2B0204 Poplar cDNA librar... 56 2e-006
gb|CN517736.1|CN517736 GQ0094.B3_L07 GQ009 Populus trichoca... 56 2e-006
gb|CN519498.1|CN519498 GQ0102.B3_O10 GQ010 Populus trichoca... 56 2e-006
gb|CV259544.1|CV259544 WS02011.B21_K06 PTxN-IB-N-A-11 Popul... 56 2e-006
gb|CV261013.1|CV261013 WS02015.B21_J20 PTxN-IB-N-A-11 Popul... 56 2e-006
gb|CV262163.1|CV262163 WS02018.B21_M22 PTxN-IB-N-A-11 Popul... 56 2e-006
gb|CV265325.1|CV265325 WS02026.B21_P03 PTxN-IB-N-A-11 Popul... 56 2e-006
gb|CV266155.1|CV266155 WS02029.B21_E02 PTxN-IB-N-A-11 Popul... 56 2e-006
gb|CV268317.1|CV268317 WS0205.B21_C09 PTxN-IB-N-A-11 Populu... 56 2e-006
gb|CV270355.1|CV270355 WS0151.B21_M11 PTxN-IB-A-6 Populus t... 56 2e-006
gb|CV271294.1|CV271294 WS0154.B21_E23 PTxN-IB-A-6 Populus t... 56 2e-006
gb|CV271368.1|CV271368 WS0154.B21_I07 PTxN-IB-A-6 Populus t... 56 2e-006
gb|CX655533.1|CX655533 PO02036B01 Poplar SC cDNA library Po... 56 2e-006
gb|CX655551.1|CX655551 PO02036D04 Poplar SC cDNA library Po... 56 2e-006
gb|DN486974.1|DN486974 P078B11.3pR Populus petioles cDNA li... 56 2e-006
gb|DT507184.1|DT507184 WS02417.BR_J07 PTxD-ICC-N-A-14 Popul... 56 2e-006
gb|DT511836.1|DT511836 WS02417.B21_J07 PTxD-ICC-N-A-14 Popu... 56 2e-006
gb|DT522442.1|DT522442 WS02036.B21_P20 PTxN-IB-N-A-11 Popul... 56 2e-006
gb|BU836626.1|BU836626 T088H07 Populus apical shoot cDNA li... 52 4e-005
gb|CF232390.1|CF232390 PtaJXO0009H4H0416 Poplar cDNA librar... 50 1e-004
gb|AI164537.1|AI164537 A064p06u Hybrid aspen plasmid librar... 48 5e-004
gb|CV130556.1|CV130556 B9SP04b08 Populus stem seasonal libr... 48 5e-004
gb|CV225810.1|CV225810 WS0162.B21_H10 PT-DX-A-7 Populus tri... 48 5e-004
gb|CV227881.1|CV227881 WS0168.B21_H18 PT-DX-A-7 Populus tri... 48 5e-004
gb|CV228003.1|CV228003 WS0168.B21_N05 PT-DX-A-7 Populus tri... 48 5e-004
gb|CV230596.1|CV230596 WS0192.B21_A18 PT-DX-N-A-10 Populus ... 48 5e-004
gb|CV231842.1|CV231842 WS0195.B21_L17 PT-DX-N-A-10 Populus ... 48 5e-004
gb|DT470270.1|DT470270 WS01920.C21_F21 PT-DX-N-A-10 Populus... 48 5e-004
gb|DT479448.1|DT479448 WS02525.BR_O15 PT-MB-N-A-15 Populus ... 48 5e-004
gb|DT484615.1|DT484615 WS02525.B21_O15 PT-MB-N-A-15 Populus... 48 5e-004
gb|DT509292.1|DT509292 WS02423.BR_F08 PTxD-ICC-N-A-14 Popul... 48 5e-004
gb|DT513904.1|DT513904 WS02423.B21_F08 PTxD-ICC-N-A-14 Popu... 48 5e-004
gb|CV259062.1|CV259062 WS02010.B21_E06 PTxN-IB-N-A-11 Popul... 44 0.009
gb|CX175703.1|CX175703 C06_69-40_06.ab1 leaf inoculated wit... 44 0.009
gb|BI127495.1|BI127495 G061P45Y Populus cambium cDNA librar... 42 0.034
gb|BU821516.1|BU821516 UB24CPB10 Populus tremula cambium cD... 42 0.034
gb|BU894139.1|BU894139 X003D08 Populus wood cDNA library Po... 42 0.034
gb|BU896354.1|BU896354 X039E02 Populus wood cDNA library Po... 42 0.034
gb|CF234792.1|CF234792 PtaJXT0015B9B0903 Poplar cDNA librar... 42 0.034
gb|CK108087.1|CK108087 G092P84 Populus tension wood cDNA li... 42 0.034
gb|CV243916.1|CV243916 WS0253.B21_D13 PT-MB-N-A-15 Populus ... 42 0.034
gb|CX185341.1|CX185341 D05_45-78_07.ab1 leaf inoculated wit... 42 0.034
gb|DT481256.1|DT481256 WS02531.BR_F18 PT-MB-N-A-15 Populus ... 42 0.034
gb|DT486572.1|DT486572 WS02531.B21_F18 PT-MB-N-A-15 Populus... 42 0.034
gb|DT500128.1|DT500128 PX0011.BR_E17 PT-X-FL-A-1 Populus tr... 42 0.034
gb|DT522118.1|DT522118 WS02036.B21_B20 PTxN-IB-N-A-11 Popul... 42 0.034
gb|CV131082.1|CV131082 L1P05f10 Populus stem seasonal libra... 40 0.13
>gb|BU862701.1|BU862701 S019A04 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 680
Score = 71.9 bits (36), Expect = 4e-011
Identities = 123/152 (80%)
Strand = Plus / Minus
Query: 477 agtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgtagttcgtg 536
||||||||||| | ||||| ||| | |||| || |||||||| || |||||||| |||
Sbjct: 260 agtgctgcaactaatccagcatttccagcaatcgttggctctgtataattgtagttggtg 201
Query: 537 cggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaacaaggatg 596
|||||||| | | | || ||| |||||||||| ||||| ||||| ||||||||||| |
Sbjct: 200 cggacatcatggaaaccatcatgcctgtcaggaccagcaaccatggctccaacaagtgta 141
Query: 597 ttagggtttgccttcttcgtgtccctccattt 628
|| || |||| |||| | ||||||||||||||
Sbjct: 140 tttggatttggcttcgtggtgtccctccattt 109
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 384 ggcggcggtgtcggaaacattggagggatcgcagagaagatggtgttcttgtc 436
|||||||| || ||||||||||| || | |||||||| ||||||||||||||
Sbjct: 347 ggcggcggggttggaaacattgggggaactgcagagaatatggtgttcttgtc 295
>gb|BI127931.1|BI127931 G068P36Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 478
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 442 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 383
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 382 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 327
>gb|BI128418.1|BI128418 G075P56Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 539
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 515 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 456
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 455 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 400
>gb|BI128462.1|BI128462 G076P64Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 513
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 412 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 353
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 352 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 297
>gb|BI130837.1|BI130837 G111P47Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 492
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 471 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 412
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 411 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 356
>gb|BI131914.1|BI131914 G127P54Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 382
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 332 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 273
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 272 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 217
>gb|BU888804.1|BU888804 P012G04 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 691
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 199 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 140
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 139 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 84
>gb|BU896200.1|BU896200 X037B03 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 703
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 271 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 212
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 211 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 156
Score = 42.1 bits (21), Expect = 0.034
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 396 ggaaacattggagggatcgcagagaagatggtgttcttgtc 436
||||||||||| || | |||||||| ||||||||||||||
Sbjct: 382 ggaaacattgggggaactgcagagaatatggtgttcttgtc 342
>gb|BU897803.1|BU897803 X069H06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 747
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 411 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 352
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 351 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 296
Score = 42.1 bits (21), Expect = 0.034
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 396 ggaaacattggagggatcgcagagaagatggtgttcttgtc 436
||||||||||| || | |||||||| ||||||||||||||
Sbjct: 522 ggaaacattgggggaactgcagagaatatggtgttcttgtc 482
>gb|CF232330.1|CF232330 PtaJXO0009B6B0604 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 734
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 245 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 186
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 185 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 130
Score = 42.1 bits (21), Expect = 0.034
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 396 ggaaacattggagggatcgcagagaagatggtgttcttgtc 436
||||||||||| || | |||||||| ||||||||||||||
Sbjct: 356 ggaaacattgggggaactgcagagaatatggtgttcttgtc 316
>gb|CF235915.1|CF235915 PtaJXT0028E1E0109 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 732
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 265 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 206
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 205 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 150
Score = 42.1 bits (21), Expect = 0.034
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 396 ggaaacattggagggatcgcagagaagatggtgttcttgtc 436
||||||||||| || | |||||||| ||||||||||||||
Sbjct: 376 ggaaacattgggggaactgcagagaatatggtgttcttgtc 336
>gb|DN496569.1|DN496569 P078B11.5pR Populus petioles cDNA library Populus tremula cDNA
clone P078B11 5', mRNA sequence
Length = 830
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 511 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 452
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 451 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 396
Score = 42.1 bits (21), Expect = 0.034
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 396 ggaaacattggagggatcgcagagaagatggtgttcttgtc 436
||||||||||| || | |||||||| ||||||||||||||
Sbjct: 622 ggaaacattgggggaactgcagagaatatggtgttcttgtc 582
>gb|AY535003.1| Populus tremuloides endo-1,4-beta-glucanase (Kor1) mRNA, complete cds
Length = 2562
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 1974 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 1915
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 1914 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 1859
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 396 ggaaacattggagggatcgcagagaagatggtgttcttgtc 436
||||||||||| || | ||||||||| ||||||||||||||
Sbjct: 2085 ggaaacattgggggaaccgcagagaatatggtgttcttgtc 2045
>gb|AY660967.1| Populus tremula x Populus tremuloides Cel9A mRNA, complete cds
Length = 1860
Score = 63.9 bits (32), Expect = 9e-009
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 1712 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 1653
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 1652 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 1597
Score = 42.1 bits (21), Expect = 0.034
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 396 ggaaacattggagggatcgcagagaagatggtgttcttgtc 436
||||||||||| || | |||||||| ||||||||||||||
Sbjct: 1823 ggaaacattgggggaactgcagagaatatggtgttcttgtc 1783
>gb|AJ775074.1|AJ775074 AJ775074 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300027E06F1, mRNA sequence
Length = 614
Score = 60.0 bits (30), Expect = 1e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 559 gcctgtcagggccagccaccattgctccaacaaggatgttagggtttgccttcttcgtgt 618
|||||||||||||||| ||||| ||||||||||| | || ||||||| |||| ||||
Sbjct: 125 gcctgtcagggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgt 66
Query: 619 ccctccattt 628
||||||||||
Sbjct: 65 ccctccattt 56
Score = 42.1 bits (21), Expect = 0.034
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 396 ggaaacattggagggatcgcagagaagatggtgttcttgtc 436
||||||||||| || | |||||||| ||||||||||||||
Sbjct: 282 ggaaacattgggggaactgcagagaatatggtgttcttgtc 242
>gb|BU869339.1|BU869339 M128H12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 608
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 121 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 62
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 61 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 6
>gb|CA927392.1|CA927392 MTU6CR.P8.D11 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 690
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 308 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 249
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| | ||||||||||||
Sbjct: 248 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggcgtccctccattt 193
Score = 42.1 bits (21), Expect = 0.034
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 396 ggaaacattggagggatcgcagagaagatggtgttcttgtc 436
||||||||||| || | |||||||| ||||||||||||||
Sbjct: 419 ggaaacattgggggaactgcagagaatatggtgttcttgtc 379
>gb|CF235295.1|CF235295 PtaJXT0021B2B0204 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 628
Score = 56.0 bits (28), Expect = 2e-006
Identities = 121/152 (79%)
Strand = Plus / Minus
Query: 477 agtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgtagttcgtg 536
||||||||||| | ||||| ||| | |||| || |||||||| || |||||||| |||
Sbjct: 284 agtgctgcaactaatccagcatttccagcaatcgttggctctgtataattgtagttggtg 225
Query: 537 cggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaacaaggatg 596
|| ||||| | | || ||| |||||||||| ||||| ||||| ||||||||||| |
Sbjct: 224 cgaacatcacggaaaccatcatgcctgtcaggaccagcaaccatggctccaacaagtgta 165
Query: 597 ttagggtttgccttcttcgtgtccctccattt 628
|| || |||| |||| | ||||||||||||||
Sbjct: 164 tttggatttggcttcgtggtgtccctccattt 133
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 384 ggcggcggtgtcggaaacattggagggatcgcagagaagatggtgttcttgtc 436
|||||||| || ||||||||||| || | |||||||| ||||||||||||||
Sbjct: 371 ggcggcggggttggaaacattgggggaactgcagagaatatggtgttcttgtc 319
>gb|CN517736.1|CN517736 GQ0094.B3_L07 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0094_L07 5', mRNA sequence
Length = 373
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 210 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 151
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 150 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 95
>gb|CN519498.1|CN519498 GQ0102.B3_O10 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0102_O10 5', mRNA sequence
Length = 593
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 331 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 272
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 271 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 216
>gb|CV259544.1|CV259544 WS02011.B21_K06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_K06 3', mRNA sequence
Length = 711
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 514 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 573
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 574 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 629
>gb|CV261013.1|CV261013 WS02015.B21_J20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02015_J20 3', mRNA sequence
Length = 843
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 515 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 574
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 575 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 630
>gb|CV262163.1|CV262163 WS02018.B21_M22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02018_M22 3', mRNA sequence
Length = 925
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 516 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 575
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 576 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 631
>gb|CV265325.1|CV265325 WS02026.B21_P03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02026_P03 3', mRNA sequence
Length = 835
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 542 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 601
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 602 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 657
>gb|CV266155.1|CV266155 WS02029.B21_E02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02029_E02 3', mRNA sequence
Length = 807
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 546 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 487
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 486 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 431
>gb|CV268317.1|CV268317 WS0205.B21_C09 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0205_C09 3', mRNA sequence
Length = 740
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 516 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 575
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 576 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 631
>gb|CV270355.1|CV270355 WS0151.B21_M11 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_M11 3', mRNA sequence
Length = 844
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 516 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 575
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 576 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 631
>gb|CV271294.1|CV271294 WS0154.B21_E23 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0154_E23 3', mRNA sequence
Length = 833
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 233 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 174
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 173 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 118
>gb|CV271368.1|CV271368 WS0154.B21_I07 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0154_I07 3', mRNA sequence
Length = 844
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 516 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 575
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 576 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 631
>gb|CX655533.1|CX655533 PO02036B01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02036B01 5', mRNA sequence
Length = 627
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 106 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 47
Query: 573 gccaccattgctccaacaag 592
|| ||||| |||||||||||
Sbjct: 46 gcaaccatggctccaacaag 27
Score = 42.1 bits (21), Expect = 0.034
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 396 ggaaacattggagggatcgcagagaagatggtgttcttgtc 436
||||||||||| || | |||||||| ||||||||||||||
Sbjct: 217 ggaaacattgggggaactgcagagaatatggtgttcttgtc 177
>gb|CX655551.1|CX655551 PO02036D04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02036D04 5', mRNA sequence
Length = 419
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 106 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 47
Query: 573 gccaccattgctccaacaag 592
|| ||||| |||||||||||
Sbjct: 46 gcaaccatggctccaacaag 27
Score = 42.1 bits (21), Expect = 0.034
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 396 ggaaacattggagggatcgcagagaagatggtgttcttgtc 436
||||||||||| || | |||||||| ||||||||||||||
Sbjct: 217 ggaaacattgggggaactgcagagaatatggtgttcttgtc 177
>gb|DN486974.1|DN486974 P078B11.3pR Populus petioles cDNA library Populus tremula cDNA
clone P078B11 3', mRNA sequence
Length = 690
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 497 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 556
Query: 573 gccaccattgctccaacaag 592
|| ||||| |||||||||||
Sbjct: 557 gcaaccatggctccaacaag 576
Score = 42.1 bits (21), Expect = 0.034
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 396 ggaaacattggagggatcgcagagaagatggtgttcttgtc 436
||||||||||| || | |||||||| ||||||||||||||
Sbjct: 386 ggaaacattgggggaactgcagagaatatggtgttcttgtc 426
>gb|DT507184.1|DT507184 WS02417.BR_J07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_J07 5', mRNA sequence
Length = 822
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 415 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 356
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 355 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 300
>gb|DT511836.1|DT511836 WS02417.B21_J07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_J07 3', mRNA sequence
Length = 773
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 516 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 575
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 576 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 631
>gb|DT522442.1|DT522442 WS02036.B21_P20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02036_P20 3', mRNA sequence
Length = 844
Score = 56.0 bits (28), Expect = 2e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 516 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 575
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 576 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 631
>gb|BU836626.1|BU836626 T088H07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 757
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 559 gcctgtcagggccagccaccattgctccaacaag 592
|||||||||||||||| ||||| |||||||||||
Sbjct: 730 gcctgtcagggccagcaaccatggctccaacaag 697
>gb|CF232390.1|CF232390 PtaJXO0009H4H0416 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 470
Score = 50.1 bits (25), Expect = 1e-004
Identities = 95/117 (81%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtca-gggcc 571
|||||||| || || ||||| ||||| ||||| | | | || ||| |||||||| |||||
Sbjct: 245 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcangggcc 186
Query: 572 agccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
||| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 185 agcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 129
Score = 42.1 bits (21), Expect = 0.034
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 396 ggaaacattggagggatcgcagagaagatggtgttcttgtc 436
||||||||||| || | |||||||| ||||||||||||||
Sbjct: 357 ggaaacattgggggaactgcagagaatatggtgttcttgtc 317
>gb|AI164537.1|AI164537 A064p06u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 399
Score = 48.1 bits (24), Expect = 5e-004
Identities = 94/116 (81%), Gaps = 1/116 (0%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||||||||||||||
Sbjct: 309 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 250
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
| | |||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 249 g-ctccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 195
>gb|CV130556.1|CV130556 B9SP04b08 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 860
Score = 48.1 bits (24), Expect = 5e-004
Identities = 93/116 (80%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| |||||||||
Sbjct: 568 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggccc 509
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 508 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 453
>gb|CV225810.1|CV225810 WS0162.B21_H10 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_H10
3', mRNA sequence
Length = 752
Score = 48.1 bits (24), Expect = 5e-004
Identities = 93/116 (80%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 515 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 574
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||| | |||| ||||||||||||||
Sbjct: 575 gcaaccatggctccaacaagtgtatttgggttcggcttcgaggtgtccctccattt 630
>gb|CV227881.1|CV227881 WS0168.B21_H18 PT-DX-A-7 Populus trichocarpa cDNA clone WS0168_H18
3', mRNA sequence
Length = 722
Score = 48.1 bits (24), Expect = 5e-004
Identities = 93/116 (80%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| |||||||||
Sbjct: 515 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggccc 574
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 575 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 630
>gb|CV228003.1|CV228003 WS0168.B21_N05 PT-DX-A-7 Populus trichocarpa cDNA clone WS0168_N05
3', mRNA sequence
Length = 873
Score = 48.1 bits (24), Expect = 5e-004
Identities = 93/116 (80%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| |||||||||
Sbjct: 548 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggccc 607
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 608 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 663
>gb|CV230596.1|CV230596 WS0192.B21_A18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0192_A18 3', mRNA sequence
Length = 849
Score = 48.1 bits (24), Expect = 5e-004
Identities = 93/116 (80%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| |||||||||
Sbjct: 377 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggccc 318
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 317 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 262
>gb|CV231842.1|CV231842 WS0195.B21_L17 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0195_L17 3', mRNA sequence
Length = 685
Score = 48.1 bits (24), Expect = 5e-004
Identities = 93/116 (80%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| |||||||||
Sbjct: 513 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggccc 572
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 573 gcaaccatggctccaacaagtgtatttgggtttggcttcaaggtgtccctccattt 628
>gb|DT470270.1|DT470270 WS01920.C21_F21 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01920_F21 3', mRNA sequence
Length = 783
Score = 48.1 bits (24), Expect = 5e-004
Identities = 93/116 (80%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| |||||||||
Sbjct: 512 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggccc 571
Query: 573 gccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccattt 628
|| ||||| ||||||||||| | || ||||||| |||| ||||||||||||||
Sbjct: 572 gcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccattt 627
>gb|DT479448.1|DT479448 WS02525.BR_O15 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_O15 5', mRNA sequence
Length = 624
Score = 48.1 bits (24), Expect = 5e-004
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 113 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 54
Query: 573 gccaccattgctccaacaag 592
|| ||||| |||||||||||
Sbjct: 53 gcaaccatggctccaacaag 34
>gb|DT484615.1|DT484615 WS02525.B21_O15 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_O15 3', mRNA sequence
Length = 624
Score = 48.1 bits (24), Expect = 5e-004
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 512 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 571
Query: 573 gccaccattgctccaacaag 592
|| ||||| |||||||||||
Sbjct: 572 gcaaccatggctccaacaag 591
>gb|DT509292.1|DT509292 WS02423.BR_F08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_F08 5', mRNA sequence
Length = 611
Score = 48.1 bits (24), Expect = 5e-004
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 97 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 38
Query: 573 gccaccattgctccaacaag 592
|| ||||| |||||||||||
Sbjct: 37 gcaaccatggctccaacaag 18
>gb|DT513904.1|DT513904 WS02423.B21_F08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_F08 3', mRNA sequence
Length = 611
Score = 48.1 bits (24), Expect = 5e-004
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 513 ggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggcca 572
|||||||| || || ||||| ||||| ||||| | | | || ||| ||| ||||||||||
Sbjct: 515 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgccggtcagggcca 574
Query: 573 gccaccattgctccaacaag 592
|| ||||| |||||||||||
Sbjct: 575 gcaaccatggctccaacaag 594
>gb|CV259062.1|CV259062 WS02010.B21_E06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02010_E06 3', mRNA sequence
Length = 549
Score = 44.1 bits (22), Expect = 0.009
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 384 ggcggcggtgtcggaaacattggagggatcgcagagaagatggtgttctt 433
|||||||| || ||||||||||| || | |||||||| |||||||||||
Sbjct: 375 ggcggcggagttggaaacattgggggaactgcagagaatatggtgttctt 424
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 96,556
Number of Sequences: 369679
Number of extensions: 96556
Number of successful extensions: 25988
Number of sequences better than 0.5: 64
Number of HSP's better than 0.5 without gapping: 63
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25794
Number of HSP's gapped (non-prelim): 192
length of query: 845
length of database: 203,408,664
effective HSP length: 19
effective length of query: 826
effective length of database: 196,384,763
effective search space: 162213814238
effective search space used: 162213814238
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)