BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161072.2.1
(1197 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF119034.1|CF119034 MTU10CS.P12.F05 Aspen stem cDNA Libr... 44 0.012
gb|DN487030.1|DN487030 P083H04.3pR Populus petioles cDNA li... 44 0.012
>gb|CF119034.1|CF119034 MTU10CS.P12.F05 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 742
Score = 44.1 bits (22), Expect = 0.012
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1091 tactggagctcngagcagtaggaggccat 1119
||||||||||| || ||||||||||||||
Sbjct: 568 tactggagctcagaacagtaggaggccat 596
>gb|DN487030.1|DN487030 P083H04.3pR Populus petioles cDNA library Populus tremula cDNA clone
P083H04 3', mRNA sequence
Length = 848
Score = 44.1 bits (22), Expect = 0.012
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1091 tactggagctcngagcagtaggaggccat 1119
||||| ||||| |||||||||||||||||
Sbjct: 818 tactgaagctcagagcagtaggaggccat 846
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 98,587
Number of Sequences: 369679
Number of extensions: 98587
Number of successful extensions: 26802
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26800
Number of HSP's gapped (non-prelim): 2
length of query: 1197
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1178
effective length of database: 196,384,763
effective search space: 231341250814
effective search space used: 231341250814
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)