BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805202.2.1
(1139 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI164945.1|AI164945 A071P32U Hybrid aspen plasmid librar... 72 5e-011
gb|CK099512.1|CK099512 A071P32.5pR Hybrid aspen plasmid lib... 72 5e-011
gb|AI161908.1|AI161908 A009P39U Hybrid aspen plasmid librar... 64 1e-008
gb|AI162294.1|AI162294 A015P38U Hybrid aspen plasmid librar... 64 1e-008
gb|AI164764.1|AI164764 A068P40U Hybrid aspen plasmid librar... 64 1e-008
gb|BI128260.1|BI128260 G073P32Y Populus cambium cDNA librar... 64 1e-008
gb|BU820620.1|BU820620 UB12CPB07 Populus tremula cambium cD... 64 1e-008
gb|BU871910.1|BU871910 Q036A01 Populus flower cDNA library ... 64 1e-008
gb|BU873882.1|BU873882 Q061A01 Populus flower cDNA library ... 64 1e-008
gb|CB239680.1|CB239680 RSH15C07 two-month-old roots from cl... 64 1e-008
gb|CF231938.1|CF231938 PtaC0027F12F1212 Poplar cDNA library... 64 1e-008
gb|CK098220.1|CK098220 A008P12.5pR Hybrid aspen plasmid lib... 64 1e-008
gb|CK098245.1|CK098245 A009P39.5pR Hybrid aspen plasmid lib... 64 1e-008
gb|CK116853.1|CK116853 B018P72 Hybrid aspen plasmid library... 64 1e-008
gb|CV236388.1|CV236388 WS01223.B21_O18 PT-GT-FL-A-3 Populus... 64 1e-008
gb|CV238776.1|CV238776 WS0128.B21.1_A07 PT-GT-FL-A-3 Populu... 64 1e-008
gb|CV246557.1|CV246557 WS01111.B21_B06 PT-P-FL-A-2 Populus ... 64 1e-008
gb|CV248490.1|CV248490 WS01120.B21_P04 PT-P-FL-A-2 Populus ... 64 1e-008
gb|DT475725.1|DT475725 WS0128.BR_A07 PT-GT-FL-A-3 Populus t... 64 1e-008
gb|DT489931.1|DT489931 WS02543.B21_J08 PT-MB-N-A-15 Populus... 64 1e-008
gb|DT495598.1|DT495598 WS01120.BR_P04 PT-P-FL-A-2 Populus t... 64 1e-008
gb|DT498907.1|DT498907 WS0116.BR_L05 PT-P-FL-A-2 Populus tr... 64 1e-008
gb|DT499923.1|DT499923 WS9991.BR_L17 PT-P-FL-A-2 Populus tr... 64 1e-008
gb|DT500911.1|DT500911 PX0019.BR_M17 PT-X-FL-A-1 Populus tr... 64 1e-008
gb|CA825212.1|CA825212 R55B12 two-month-old roots from clon... 48 7e-004
gb|CK088432.1|CK088432 A052P67.3pR Hybrid aspen plasmid lib... 44 0.012
gb|CK099130.1|CK099130 A052P67.5pR Hybrid aspen plasmid lib... 42 0.046
gb|AJ769297.1|AJ769297 AJ769297 Populus euphratica leaf adu... 42 0.046
gb|CV259772.1|CV259772 WS02012.B21_D20 PTxN-IB-N-A-11 Popul... 40 0.18
gb|CV265080.1|CV265080 WS02026.B21_E09 PTxN-IB-N-A-11 Popul... 40 0.18
>gb|AI164945.1|AI164945 A071P32U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 342
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||||||||| || |||||||| | || || || | |||||| || |||||||||
Sbjct: 267 gcaaaggtgagctcaaagagagtgatcatggaataaagaatccagtaagtaagccattgc 208
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||||||| ||||||||| || ||||| |||| |||||||| ||||||||
Sbjct: 207 ttatcatccacatgagattttgtctcgattgccctaattgaggcatatagaggata 152
>gb|CK099512.1|CK099512 A071P32.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A071P32 5', mRNA sequence
Length = 384
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||||||||| || |||||||| | || || || | |||||| || |||||||||
Sbjct: 310 gcaaaggtgagctcaaagagagtgatcatggaataaagaatccagtaagtaagccattgc 251
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||||||| ||||||||| || ||||| |||| |||||||| ||||||||
Sbjct: 250 ttatcatccacatgagattttgtctcgattgccctaattgaggcatatagaggata 195
>gb|AI161908.1|AI161908 A009P39U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 505
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| ||||| || || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 172 gcaaaggtaagctcaaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 113
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| |||||||||||||||||
Sbjct: 112 ttatcatcaacgtgagatttagtctcaattgccctaattgaggcatacagaggata 57
>gb|AI162294.1|AI162294 A015P38U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 566
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| ||||| || || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 266 gcaaaggtaagctcaaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 207
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| |||||||||||||||||
Sbjct: 206 ttatcatcaacgtgagatttagtctcaattgccctaattgaggcatacagaggata 151
>gb|AI164764.1|AI164764 A068P40U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 424
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| ||||| || || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 176 gcaaaggtaagctcaaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 117
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| |||||||||||||||||
Sbjct: 116 ttatcatcaacgtgagatttagtctcaattgccctaattgaggcatacagaggata 61
>gb|BI128260.1|BI128260 G073P32Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 421
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| ||||| || || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 292 gcaaaggtaagctctaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 233
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| |||||||||||||||||
Sbjct: 232 ttatcatcaacgtgagatttagtctcaattgccctaattgaggcatacagaggata 177
>gb|BU820620.1|BU820620 UB12CPB07 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 504
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| ||||| || || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 165 gcaaaggtaagctcaaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 106
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| |||||||||||||||||
Sbjct: 105 ttatcatcaacgtgagatttagtctcaattgccctaattgaggcatacagaggata 50
>gb|BU871910.1|BU871910 Q036A01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 407
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||||||||| || |||||||| | || || || | |||||| || |||||||||
Sbjct: 259 gcaaaggtgagctcaaagagagtgatcatggaataaagaatccagtaagtaagccattgc 200
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| ||| ||||||||| || ||||| |||| |||||||| ||||||||
Sbjct: 199 ttatcatcaacatgagattttgtctcgattgccctaattgaggcatatagaggata 144
>gb|BU873882.1|BU873882 Q061A01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 555
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||||||||| || |||||||| | || || || | |||||| || |||||||||
Sbjct: 263 gcaaaggtgagctcaaagagagtgatcatggaataaagaatccagtaagtaagccattgc 204
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| ||| ||||||||| || ||||| |||| |||||||| ||||||||
Sbjct: 203 ttatcatcaacatgagattttgtctcgattgccctaattgaggcatatagaggata 148
>gb|CB239680.1|CB239680 RSH15C07 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 579
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| |||||||| || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 307 gcaaaggtaagctcgaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 248
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| || ||||||||||||||
Sbjct: 247 ttatcatcaacgtgagatttagtctcaattgccctaattgatgcatacagaggata 192
>gb|CF231938.1|CF231938 PtaC0027F12F1212 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 571
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| ||||| || || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 302 gcaaaggtaagctcaaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 243
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| |||||||||||||||||
Sbjct: 242 ttatcatcaacgtgagatttagtctcaattgccctaattgaggcatacagaggata 187
>gb|CK098220.1|CK098220 A008P12.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A008P12 5', mRNA sequence
Length = 547
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| ||||| || || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 191 gcaaaggtaagctcaaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 132
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| |||||||||||||||||
Sbjct: 131 ttatcatcaacgtgagatttagtctcaattgccctaattgaggcatacagaggata 76
>gb|CK098245.1|CK098245 A009P39.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A009P39 5', mRNA sequence
Length = 575
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| ||||| || || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 189 gcaaaggtaagctcaaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 130
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| |||||||||||||||||
Sbjct: 129 ttatcatcaacgtgagatttagtctcaattgccctaattgaggcatacagaggata 74
>gb|CK116853.1|CK116853 B018P72 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B018P72 5', mRNA sequence
Length = 482
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| ||||| || || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 277 gcaaaggtaagctcaaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 218
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| |||||||||||||||||
Sbjct: 217 ttatcatcaacgtgagatttagtctcaattgccctaattgaggcatacagaggata 162
>gb|CV236388.1|CV236388 WS01223.B21_O18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01223_O18 3', mRNA sequence
Length = 818
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| |||||||| || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 670 gcaaaggtaagctcgaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 729
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| || ||||||||||||||
Sbjct: 730 ttatcatcaacgtgagatttagtctcaattgccctaattgatgcatacagaggata 785
>gb|CV238776.1|CV238776 WS0128.B21.1_A07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_A07 3', mRNA sequence
Length = 661
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| |||||||| || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 534 gcaaaggtaagctcgaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 593
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| || ||||||||||||||
Sbjct: 594 ttatcatcaacgtgagatttagtctcaattgccctaattgatgcatacagaggata 649
>gb|CV246557.1|CV246557 WS01111.B21_B06 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01111_B06 3', mRNA sequence
Length = 767
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||||||||| || |||||||| | || || || | |||||| || |||||||||
Sbjct: 553 gcaaaggtgagctcaaagagagtgatcatggaataaagaatccagtaagtaagccattgc 612
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| ||| ||||||||| || ||||| |||| |||||||| ||||||||
Sbjct: 613 ttatcatcaacatgagattttgtctcgattgccctaattgaggcatatagaggata 668
>gb|CV248490.1|CV248490 WS01120.B21_P04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_P04 3', mRNA sequence
Length = 657
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| |||||||| || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 406 gcaaaggtaagctcgaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 465
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| || ||||||||||||||
Sbjct: 466 ttatcatcaacgtgagatttagtctcaattgccctaattgatgcatacagaggata 521
>gb|DT475725.1|DT475725 WS0128.BR_A07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_A07 5', mRNA sequence
Length = 574
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| |||||||| || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 365 gcaaaggtaagctcgaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 306
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| || ||||||||||||||
Sbjct: 305 ttatcatcaacgtgagatttagtctcaattgccctaattgatgcatacagaggata 250
>gb|DT489931.1|DT489931 WS02543.B21_J08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02543_J08 3', mRNA sequence
Length = 819
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| |||||||| || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 658 gcaaaggtaagctcgaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 717
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| || ||||||||||||||
Sbjct: 718 ttatcatcaacgtgagatttagtctcaattgccctaattgatgcatacagaggata 773
>gb|DT495598.1|DT495598 WS01120.BR_P04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_P04 5', mRNA sequence
Length = 676
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| |||||||| || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 271 gcaaaggtaagctcgaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 212
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| || ||||||||||||||
Sbjct: 211 ttatcatcaacgtgagatttagtctcaattgccctaattgatgcatacagaggata 156
>gb|DT498907.1|DT498907 WS0116.BR_L05 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0116_L05
5', mRNA sequence
Length = 635
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| |||||||| || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 318 gcaaaggtaagctcgaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 259
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| || ||||||||||||||
Sbjct: 258 ttatcatcaacgtgagatttagtctcaattgccctaattgatgcatacagaggata 203
>gb|DT499923.1|DT499923 WS9991.BR_L17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01111_B06 5', mRNA sequence
Length = 483
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||||||||| || |||||||| | || || || | |||||| || |||||||||
Sbjct: 355 gcaaaggtgagctcaaagagagtgatcatggaataaagaatccagtaagtaagccattgc 296
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| ||| ||||||||| || ||||| |||| |||||||| ||||||||
Sbjct: 295 ttatcatcaacatgagattttgtctcgattgccctaattgaggcatatagaggata 240
>gb|DT500911.1|DT500911 PX0019.BR_M17 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0019_M17
5', mRNA sequence
Length = 624
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| |||||||| || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 304 gcaaaggtaagctcgaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 245
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || |||||||| |||| || ||||||||||||||
Sbjct: 244 ttatcatcaacgtgagatttagtctcaattgccctaattgatgcatacagaggata 189
>gb|CA825212.1|CA825212 R55B12 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 550
Score = 48.1 bits (24), Expect = 7e-004
Identities = 93/116 (80%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| ||||| || || ||||| | |||||| || | |||||| || |||||||||
Sbjct: 278 gcaaaggtaagctcaaagagtgtgatcattgagtaaagaatccagtaagtaagccattgc 219
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggata 828
| |||||| || |||||| || || ||||| |||| || ||||||||||||||
Sbjct: 218 ttatcatcaacgtgagatttagtctcgattgccctaattgatgcatacagaggata 163
>gb|CK088432.1|CK088432 A052P67.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A052P67 3', mRNA sequence
Length = 663
Score = 44.1 bits (22), Expect = 0.012
Identities = 80/98 (81%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 713 gcaaaggtgag-ctcgaatagagtgataaatgagtacagcacccagtacgtgagccattg 771
||||||||||| ||| || |||||||| | || || || | |||||| || ||||||||
Sbjct: 559 gcaaaggtgagcctcaaagagagtgatcatggaataaagaatccagtaagtaagccattg 618
Query: 772 ctgatcatccacagcagattttgtttcaattgctctaa 809
|| |||||||||| ||||||||| || ||||| ||||
Sbjct: 619 cttatcatccacatgagattttgtctcgattgccctaa 656
>gb|CK099130.1|CK099130 A052P67.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A052P67 5', mRNA sequence
Length = 250
Score = 42.1 bits (21), Expect = 0.046
Identities = 57/69 (82%)
Strand = Plus / Minus
Query: 716 aaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgctga 775
||||||||||| || |||||||| | || || || | |||||| || |||||||||| |
Sbjct: 250 aaggtgagctcaaagagagtgatcatggaataaagaatccagtaagtaagccattgctta 191
Query: 776 tcatccaca 784
|||||||||
Sbjct: 190 tcatccaca 182
>gb|AJ769297.1|AJ769297 AJ769297 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100028D12F1, mRNA sequence
Length = 618
Score = 42.1 bits (21), Expect = 0.046
Identities = 108/137 (78%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
|||||||| ||||| || || ||||| | ||| || || | |||||| || ||||| |||
Sbjct: 291 gcaaaggtaagctcaaagagtgtgatcattgaataaagaatccagtaagtaagccactgc 232
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggatacgca 832
| |||||| || |||||| || |||||||| |||| || |||||||||||||| ||
Sbjct: 231 ttatcatcaacgtgagatttagtctcaattgccctaattgatgcatacagaggataaaca 172
Query: 833 agtgaaaccaaaggccc 849
|| ||||||||||||
Sbjct: 171 agactaaccaaaggccc 155
>gb|CV259772.1|CV259772 WS02012.B21_D20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_D20 3', mRNA sequence
Length = 596
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1113 tctttcttgctcttctctct 1132
||||||||||||||||||||
Sbjct: 559 tctttcttgctcttctctct 578
>gb|CV265080.1|CV265080 WS02026.B21_E09 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02026_E09 3', mRNA sequence
Length = 665
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1113 tctttcttgctcttctctct 1132
||||||||||||||||||||
Sbjct: 633 tctttcttgctcttctctct 652
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 150,020
Number of Sequences: 369679
Number of extensions: 150020
Number of successful extensions: 43243
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 43219
Number of HSP's gapped (non-prelim): 32
length of query: 1139
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1120
effective length of database: 196,384,763
effective search space: 219950934560
effective search space used: 219950934560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)