BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.3
(671 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV252351.1|CV252351 PX0011.B21_G15 PT-X-FL-A-1 Populus t... 103 8e-021
gb|CF232388.1|CF232388 PtaJXO0009H2H0216 Poplar cDNA librar... 92 3e-017
gb|CF235321.1|CF235321 PtaJXT0021D9D0907 Poplar cDNA librar... 90 1e-016
gb|AY095297.1| Populus tremuloides cellulose synthase (CesA... 90 1e-016
gb|AJ774508.1|AJ774508 AJ774508 Populus euphratica shoot 3-... 84 8e-015
gb|AJ775294.1|AJ775294 AJ775294 Populus euphratica shoot 3-... 84 8e-015
gb|AJ775532.1|AJ775532 AJ775532 Populus euphratica shoot 3-... 84 8e-015
gb|CF237222.1|CF237222 Ptajxtjxt3E10E1010 Poplar cDNA libra... 82 3e-014
gb|BI128217.1|BI128217 G072P74Y Populus cambium cDNA librar... 80 1e-013
gb|BU897746.1|BU897746 X067G02 Populus wood cDNA library Po... 80 1e-013
gb|CK102305.1|CK102305 G072P74.5pR Populus tension wood cDN... 80 1e-013
gb|CN550567.1|CN550567 GQ0241.B3_I15 GQ024 Populus trichoca... 80 1e-013
gb|AJ778410.1|AJ778410 AJ778410 Populus euphratica cambium ... 80 1e-013
gb|DT487943.1|DT487943 WS02535.B21_B11 PT-MB-N-A-15 Populus... 80 1e-013
gb|CF227669.1|CF227669 PtaXM0003A12A1202 Poplar cDNA librar... 78 5e-013
gb|CN524029.1|CN524029 GQ015M07.T3_H06 GQ015 Populus tricho... 78 5e-013
gb|CN524680.1|CN524680 GQ015M13.T3_D10 GQ015 Populus tricho... 78 5e-013
gb|CK318639.1|CK318639 X9P01f01 Populus stem seasonal libra... 78 5e-013
gb|CV225435.1|CV225435 WS0161.B21_G07 PT-DX-A-7 Populus tri... 78 5e-013
gb|CV225888.1|CV225888 WS0162.B21_K19 PT-DX-A-7 Populus tri... 78 5e-013
gb|CV226017.1|CV226017 WS0163.B21_A20 PT-DX-A-7 Populus tri... 78 5e-013
gb|CV226195.1|CV226195 WS0163.B21_J02 PT-DX-A-7 Populus tri... 78 5e-013
gb|CV227633.1|CV227633 WS0167.B21_M03 PT-DX-A-7 Populus tri... 78 5e-013
gb|AI164546.1|AI164546 A064p24u Hybrid aspen plasmid librar... 70 1e-010
gb|BI128229.1|BI128229 G072P90Y Populus cambium cDNA librar... 70 1e-010
gb|BU894361.1|BU894361 X008A10 Populus wood cDNA library Po... 70 1e-010
gb|BU894931.1|BU894931 X017A07 Populus wood cDNA library Po... 70 1e-010
gb|CF232524.1|CF232524 PtaJXO0011E3E0309 Poplar cDNA librar... 70 1e-010
gb|CF233341.1|CF233341 PtaJXO0022B5B0503 Poplar cDNA librar... 70 1e-010
gb|CF235304.1|CF235304 PtaJXT0021C1C0105 Poplar cDNA librar... 70 1e-010
gb|CK088642.1|CK088642 A064P24.3pR Hybrid aspen plasmid lib... 70 1e-010
gb|CK093129.1|CK093129 G109P08.3pR Populus tension wood cDN... 70 1e-010
gb|CV232087.1|CV232087 WS0196.B21_I06 PT-DX-N-A-10 Populus ... 70 1e-010
gb|CV268970.1|CV268970 WS0206.B21_P09 PTxN-IB-N-A-11 Populu... 70 1e-010
gb|DT469902.1|DT469902 WS01919.C21_E06 PT-DX-N-A-10 Populus... 70 1e-010
gb|AF527387.1| Populus tremuloides xylem-specific cellulose... 70 1e-010
gb|AY573571.1| Populus tremula x Populus tremuloides cellul... 70 1e-010
gb|CK102299.1|CK102299 G072P58.5pR Populus tension wood cDN... 68 5e-010
gb|DT526486.1|DT526486 WS02048.C21_C18 PTxN-IB-N-A-11 Popul... 68 5e-010
gb|BU817734.1|BU817734 UA20CPD09 Populus tremula cambium cD... 66 2e-009
gb|BU895092.1|BU895092 X019B09 Populus wood cDNA library Po... 66 2e-009
gb|CK092703.1|CK092703 G092P25.3pR Populus tension wood cDN... 64 7e-009
gb|CK097446.1|CK097446 UB51DPD11.3pR Populus active cambium... 64 7e-009
gb|CK102806.1|CK102806 G092P25.5pR Populus tension wood cDN... 64 7e-009
gb|CV130875.1|CV130875 X9SP07b02 Populus stem seasonal libr... 64 7e-009
gb|CV252662.1|CV252662 PX0015.B21_I21 PT-X-FL-A-1 Populus t... 64 7e-009
gb|CV262834.1|CV262834 WS0202.B21_K05 PTxN-IB-N-A-11 Populu... 64 7e-009
gb|CV282433.1|CV282433 WS0184.B21_J19 PTxD-IL-N-A-9 Populus... 64 7e-009
gb|DT493063.1|DT493063 WS02553.C21_E11 PT-MB-N-A-15 Populus... 64 7e-009
gb|DT500468.1|DT500468 PX0015.BR_I21 PT-X-FL-A-1 Populus tr... 64 7e-009
gb|AY162181.1| Populus tremuloides cellulose synthase (CesA... 64 7e-009
gb|BU894855.1|BU894855 X016A07 Populus wood cDNA library Po... 62 3e-008
gb|CV229552.1|CV229552 WS01913.B21_K14 PT-DX-N-A-10 Populus... 62 3e-008
gb|CV242542.1|CV242542 WS02515.B21_F16 PT-MB-N-A-15 Populus... 62 3e-008
gb|CV272431.1|CV272431 WS0157.B21_K08 PTxN-IB-A-6 Populus t... 62 3e-008
gb|CV273968.1|CV273968 WS01712.B21_M13 PTxD-NR-A-8 Populus ... 62 3e-008
gb|DV466097.1|DV466097 MTUNUL1.P47.C03 NUL Populus fremonti... 62 3e-008
gb|AF081534.1|AF081534 Populus x canescens cellulose syntha... 62 3e-008
gb|CK092951.1|CK092951 G101P46.3pR Populus tension wood cDN... 58 5e-007
gb|DT469819.1|DT469819 WS01918.C21_P21 PT-DX-N-A-10 Populus... 58 5e-007
gb|DT523570.1|DT523570 WS02040.B21_A19 PTxN-IB-N-A-11 Popul... 58 5e-007
gb|CA934196.1|CA934196 MTU3TS.P4.D08 Aspen stem cDNA Librar... 54 7e-006
gb|CF234438.1|CF234438 Ptajxojxo2F10F1012 Poplar cDNA libra... 54 7e-006
gb|CV227790.1|CV227790 WS0168.B21_D13 PT-DX-A-7 Populus tri... 54 7e-006
gb|DT493580.1|DT493580 WS0111.BR_M17 PT-P-FL-A-2 Populus tr... 54 7e-006
gb|CK111062.1|CK111062 Q008E05 Populus dormant bud cDNA lib... 52 3e-005
gb|CV283069.1|CV283069 WS0186.B21_F15 PTxD-IL-N-A-9 Populus... 48 4e-004
gb|DT470299.1|DT470299 WS01920.C21_H07 PT-DX-N-A-10 Populus... 48 4e-004
gb|AY055724.2| Populus tremuloides cellulose synthase (CesA... 48 4e-004
gb|BU870116.1|BU870116 Q008I09 Populus flower cDNA library ... 44 0.007
gb|CV225999.1|CV225999 WS0162.B21_P23 PT-DX-A-7 Populus tri... 44 0.007
gb|AY196961.1| Populus tremuloides cellulose synthase 6 (Ce... 44 0.007
gb|BU897334.1|BU897334 X055D05 Populus wood cDNA library Po... 42 0.027
gb|BI138973.1|BI138973 F120P33Y Populus flower cDNA library... 40 0.11
gb|CK091716.1|CK091716 F120P33.3pR Populus flower cDNA libr... 40 0.11
gb|CK101805.1|CK101805 F120P33.5pR Populus flower cDNA libr... 40 0.11
gb|CF229740.1|CF229740 PtaXM0029A6A0602 Poplar cDNA library... 38 0.42
gb|CK317759.1|CK317759 B9P01d09 Populus stem seasonal libra... 38 0.42
>gb|CV252351.1|CV252351 PX0011.B21_G15 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0011_G15 3', mRNA sequence
Length = 445
Score = 103 bits (52), Expect = 8e-021
Identities = 76/84 (90%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||||||||| || || ||||||||||||||| | |||||
Sbjct: 359 cttctttgccttctgggtgattgtccatctttacccgttcctcaaaggtttgatggggag 300
Query: 66 gcaaaacaggacaccgacaattgt 89
|||||||||||||||||| |||||
Sbjct: 299 gcaaaacaggacaccgactattgt 276
>gb|CF232388.1|CF232388 PtaJXO0009H2H0216 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 629
Score = 91.7 bits (46), Expect = 3e-017
Identities = 117/141 (82%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||||||||| || || |||||||||||| | | |||||
Sbjct: 458 cttctttgccttctgggtgattgtccatctctacccattcctcaaaggtctaatggggag 517
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||||||||| ||||| | | ||||| || |||||||| ||||||||
Sbjct: 518 gcaaaacaggacaccgactattgtggttatatggtcagngctcctggcttccatcttctc 577
Query: 126 actcctttgggttcggattga 146
| |||||||||||||||||
Sbjct: 578 cttgctttgggttcggattga 598
>gb|CF235321.1|CF235321 PtaJXT0021D9D0907 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 486
Score = 89.7 bits (45), Expect = 1e-016
Identities = 117/141 (82%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||||||||| || || |||||||||||| | | |||||
Sbjct: 75 cttctttgccttctgggtgattgtccatctctacccattcctcaaaggtctaatggggag 134
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||||||||| ||||| | | ||||| | || |||||||| ||||||||
Sbjct: 135 gcaaaacaggacaccgactattgtggttatatggtcagtgctcctggcttccatcttctc 194
Query: 126 actcctttgggttcggattga 146
| |||||||| ||||||||
Sbjct: 195 cttgctttgggtccggattga 215
>gb|AY095297.1| Populus tremuloides cellulose synthase (CesA2) mRNA, complete cds
Length = 3277
Score = 89.7 bits (45), Expect = 1e-016
Identities = 117/141 (82%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||||||||| || || |||||||||||| | | |||||
Sbjct: 2921 cttctttgccttctgggtgattgtccatctctacccattcctcaaaggtctaatggggag 2980
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||||||||| ||||| | | ||||| | || |||||||| ||||||||
Sbjct: 2981 gcaaaacaggacaccgactattgtggttatatggtcagtgctcctggcttccatcttctc 3040
Query: 126 actcctttgggttcggattga 146
| |||||||| ||||||||
Sbjct: 3041 cttgctttgggtccggattga 3061
>gb|AJ774508.1|AJ774508 AJ774508 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300021B12F1, mRNA sequence
Length = 655
Score = 83.8 bits (42), Expect = 8e-015
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||||||||| || || |||||||||||| | | |||||
Sbjct: 432 cttctttgccttctgggtgattgtccatctctacccattcctcaaaggtctaatggggag 491
Query: 66 gcaaaacaggacaccgac 83
||||||||||||||||||
Sbjct: 492 gcaaaacaggacaccgac 509
>gb|AJ775294.1|AJ775294 AJ775294 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300030F05F1, mRNA sequence
Length = 385
Score = 83.8 bits (42), Expect = 8e-015
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||||||||| || || |||||||||||| | | |||||
Sbjct: 163 cttctttgccttctgggtgattgtccatctctacccattcctcaaaggtctaatggggag 222
Query: 66 gcaaaacaggacaccgac 83
||||||||||||||||||
Sbjct: 223 gcaaaacaggacaccgac 240
>gb|AJ775532.1|AJ775532 AJ775532 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300033F04F1, mRNA sequence
Length = 589
Score = 83.8 bits (42), Expect = 8e-015
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||||||||| || || |||||||||||| | | |||||
Sbjct: 287 cttctttgccttctgggtgattgtccatctctacccattcctcaaaggtctaatggggag 346
Query: 66 gcaaaacaggacaccgac 83
||||||||||||||||||
Sbjct: 347 gcaaaacaggacaccgac 364
>gb|CF237222.1|CF237222 Ptajxtjxt3E10E1010 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 441
Score = 81.8 bits (41), Expect = 3e-014
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||||||||| || || |||||||||||| | | |||||
Sbjct: 80 cttctttgccttctgggtgattgtccatctctacccattcctcaaaggtctaatggggag 139
Query: 66 gcaaaacaggacaccgacaattgtc 90
||||||||||||||| || ||||||
Sbjct: 140 gcaaaacaggacacccactattgtc 164
>gb|BI128217.1|BI128217 G072P74Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 490
Score = 79.8 bits (40), Expect = 1e-013
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||||||||| || || |||||||||||| | | |||||
Sbjct: 151 cttctttgccttctgggtgattgtccatctctacccattcctcaaaggtctaatggggag 210
Query: 66 gcaaaacaggacaccgacaattgt 89
||||||||||||||| || |||||
Sbjct: 211 gcaaaacaggacacccactattgt 234
>gb|BU897746.1|BU897746 X067G02 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 367
Score = 79.8 bits (40), Expect = 1e-013
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||||||||| || || |||||||||||| | | |||||
Sbjct: 41 cttctttgccttctgggtgattgtccatctctacccattcctcaaaggtctaatggggag 100
Query: 66 gcaaaacaggacaccgacaattgt 89
||||||||||||||| || |||||
Sbjct: 101 gcaaaacaggacacccactattgt 124
>gb|CK102305.1|CK102305 G072P74.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G072P74 5', mRNA sequence
Length = 389
Score = 79.8 bits (40), Expect = 1e-013
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||||||||| || || |||||||||||| | | |||||
Sbjct: 151 cttctttgccttctgggtgattgtccatctctacccattcctcaaaggtctaatggggag 210
Query: 66 gcaaaacaggacaccgacaattgt 89
||||||||||||||| || |||||
Sbjct: 211 gcaaaacaggacacccactattgt 234
>gb|CN550567.1|CN550567 GQ0241.B3_I15 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_I15 5', mRNA sequence
Length = 777
Score = 79.8 bits (40), Expect = 1e-013
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||||||||| || || |||||||||||| | | |||||
Sbjct: 444 cttctttgccttctgggtgattgtccatctctacccattcctcaaaggtctaatggggag 503
Query: 66 gcaaaacaggacaccgacaattgt 89
||||||||||||||| || |||||
Sbjct: 504 gcaaaacaggacacccactattgt 527
>gb|AJ778410.1|AJ778410 AJ778410 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000500004B05F1, mRNA sequence
Length = 634
Score = 79.8 bits (40), Expect = 1e-013
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||||||||| || || |||||||||||| | | |||||
Sbjct: 283 cttctttgccttctgggtgattgtccatctctacccattcctcaaaggtctaatggggag 342
Query: 66 gcaaaacaggacaccgacaattgt 89
||||||||||||||| || |||||
Sbjct: 343 gcaaaacaggacacccactattgt 366
>gb|DT487943.1|DT487943 WS02535.B21_B11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_B11 3', mRNA sequence
Length = 720
Score = 79.8 bits (40), Expect = 1e-013
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||||||||| || || |||||||||||| | | |||||
Sbjct: 603 cttctttgccttctgggtgattgtccatctctacccattcctcaaaggtctaatggggag 662
Query: 66 gcaaaacaggacaccgacaattgt 89
||||||||||||||| || |||||
Sbjct: 663 gcaaaacaggacacccactattgt 686
>gb|CF227669.1|CF227669 PtaXM0003A12A1202 Poplar cDNA library from mature xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 340
Score = 77.8 bits (39), Expect = 5e-013
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggagg 66
|||||||| || ||||||||||||||||| || || |||||||||||| | | ||||||
Sbjct: 1 ttctttgccttctgggtgattgtccatctctacccattcctcaaaggtctaatggggagg 60
Query: 67 caaaacaggacaccgacaattgt 89
|||||||||||||| || |||||
Sbjct: 61 caaaacaggacacccactattgt 83
>gb|CN524029.1|CN524029 GQ015M07.T3_H06 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M07_H06 5', mRNA sequence
Length = 758
Score = 77.8 bits (39), Expect = 5e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| |||||||||||||||||| || | || ||||||||||||||
Sbjct: 466 tgggtcattgtccatctctatcccttcctcaaaggtctgatgggaaggcaaaacaggact 525
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 526 cctacaattgt 536
>gb|CN524680.1|CN524680 GQ015M13.T3_D10 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M13_D10 5', mRNA sequence
Length = 796
Score = 77.8 bits (39), Expect = 5e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| |||||||||||||||||| || | || ||||||||||||||
Sbjct: 606 tgggtcattgtccatctctatcccttcctcaaaggtctgatgggaaggcaaaacaggact 665
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 666 cctacaattgt 676
>gb|CK318639.1|CK318639 X9P01f01 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 673
Score = 77.8 bits (39), Expect = 5e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| |||||||||||||||||| || | || ||||||||||||||
Sbjct: 279 tgggtcattgtccatctctatcccttcctcaaaggtctgatgggaaggcaaaacaggact 338
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 339 cctacaattgt 349
>gb|CV225435.1|CV225435 WS0161.B21_G07 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_G07
3', mRNA sequence
Length = 764
Score = 77.8 bits (39), Expect = 5e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| |||||||||||||||||| || | || ||||||||||||||
Sbjct: 411 tgggtcattgtccatctctatcccttcctcaaaggtctgatgggaaggcaaaacaggact 352
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 351 cctacaattgt 341
>gb|CV225888.1|CV225888 WS0162.B21_K19 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_K19
3', mRNA sequence
Length = 883
Score = 77.8 bits (39), Expect = 5e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| |||||||||||||||||| || | || ||||||||||||||
Sbjct: 411 tgggtcattgtccatctctatcccttcctcaaaggtctgatgggaaggcaaaacaggact 352
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 351 cctacaattgt 341
>gb|CV226017.1|CV226017 WS0163.B21_A20 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_A20
3', mRNA sequence
Length = 807
Score = 77.8 bits (39), Expect = 5e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| |||||||||||||||||| || | || ||||||||||||||
Sbjct: 413 tgggtcattgtccatctctatcccttcctcaaaggtctgatgggaaggcaaaacaggact 354
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 353 cctacaattgt 343
>gb|CV226195.1|CV226195 WS0163.B21_J02 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_J02
3', mRNA sequence
Length = 806
Score = 77.8 bits (39), Expect = 5e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| |||||||||||||||||| || | || ||||||||||||||
Sbjct: 411 tgggtcattgtccatctctatcccttcctcaaaggtctgatgggaaggcaaaacaggact 352
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 351 cctacaattgt 341
>gb|CV227633.1|CV227633 WS0167.B21_M03 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_M03
3', mRNA sequence
Length = 823
Score = 77.8 bits (39), Expect = 5e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| |||||||||||||||||| || | || ||||||||||||||
Sbjct: 399 tgggtcattgtccatctctatcccttcctcaaaggtctgatgggaaggcaaaacaggact 340
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 339 cctacaattgt 329
>gb|AI164546.1|AI164546 A064p24u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 416
Score = 69.9 bits (35), Expect = 1e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| ||||| |||||||||||| || | || ||||||||||||||
Sbjct: 261 tgggtcattgtccatctctatcctttcctcaaaggtctgatgggaaggcaaaacaggact 320
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 321 cctacaattgt 331
>gb|BI128229.1|BI128229 G072P90Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 440
Score = 69.9 bits (35), Expect = 1e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| ||||| |||||||||||| || | || ||||||||||||||
Sbjct: 49 tgggtcattgtccatctctatcctttcctcaaaggtctgatgggaaggcaaaacaggact 108
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 109 cctacaattgt 119
>gb|BU894361.1|BU894361 X008A10 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 525
Score = 69.9 bits (35), Expect = 1e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| ||||| |||||||||||| || | || ||||||||||||||
Sbjct: 128 tgggtcattgtccatctctatcctttcctcaaaggtctgatgggaaggcaaaacaggact 187
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 188 cctacaattgt 198
>gb|BU894931.1|BU894931 X017A07 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 550
Score = 69.9 bits (35), Expect = 1e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| ||||| |||||||||||| || | || ||||||||||||||
Sbjct: 165 tgggtcattgtccatctctatcctttcctcaaaggtctgatgggaaggcaaaacaggact 224
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 225 cctacaattgt 235
>gb|CF232524.1|CF232524 PtaJXO0011E3E0309 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 620
Score = 69.9 bits (35), Expect = 1e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| ||||| |||||||||||| || | || ||||||||||||||
Sbjct: 81 tgggtcattgtccatctctatcctttcctcaaaggtctgatgggaaggcaaaacaggact 140
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 141 cctacaattgt 151
>gb|CF233341.1|CF233341 PtaJXO0022B5B0503 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 656
Score = 69.9 bits (35), Expect = 1e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| ||||| |||||||||||| || | || ||||||||||||||
Sbjct: 424 tgggtcattgtccatctctatcctttcctcaaaggtctgatgggaaggcaaaacaggact 483
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 484 cctacaattgt 494
>gb|CF235304.1|CF235304 PtaJXT0021C1C0105 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 744
Score = 69.9 bits (35), Expect = 1e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| ||||| |||||||||||| || | || ||||||||||||||
Sbjct: 357 tgggtcattgtccatctctatcctttcctcaaaggtctgatgggaaggcaaaacaggact 416
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 417 cctacaattgt 427
>gb|CK088642.1|CK088642 A064P24.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A064P24 3', mRNA sequence
Length = 673
Score = 69.9 bits (35), Expect = 1e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| ||||| |||||||||||| || | || ||||||||||||||
Sbjct: 412 tgggtcattgtccatctctatcctttcctcaaaggtctgatgggaaggcaaaacaggact 353
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 352 cctacaattgt 342
>gb|CK093129.1|CK093129 G109P08.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G109P08 3', mRNA sequence
Length = 783
Score = 69.9 bits (35), Expect = 1e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| ||||| |||||||||||| || | || ||||||||||||||
Sbjct: 415 tgggtcattgtccatctctatcctttcctcaaaggtctgatgggaaggcaaaacaggact 356
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 355 cctacaattgt 345
>gb|CV232087.1|CV232087 WS0196.B21_I06 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0196_I06 3', mRNA sequence
Length = 646
Score = 69.9 bits (35), Expect = 1e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| ||||||||||||||| || || | || ||||||||||||||
Sbjct: 430 tgggtcattgtccatctctatcccttcctcaaatgtctgatgggaaggcaaaacaggact 371
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 370 cctacaattgt 360
>gb|CV268970.1|CV268970 WS0206.B21_P09 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0206_P09 3', mRNA sequence
Length = 756
Score = 69.9 bits (35), Expect = 1e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| ||||| |||||||||||| || | || ||||||||||||||
Sbjct: 658 tgggtcattgtccatctctatcctttcctcaaaggtctgatgggaaggcaaaacaggact 717
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 718 cctacaattgt 728
>gb|DT469902.1|DT469902 WS01919.C21_E06 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_E06 3', mRNA sequence
Length = 361
Score = 69.9 bits (35), Expect = 1e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||||||||||||||| | | |||||||||||| || | ||||||||||||||||||
Sbjct: 9 tgggtgattgtccatctctcctcgttcctcaaaggtctgatggggaggcaaaacaggaca 68
Query: 79 ccgacaattgt 89
||||| |||||
Sbjct: 69 ccgactattgt 79
>gb|AF527387.1| Populus tremuloides xylem-specific cellulose synthase (CesA3) mRNA,
complete cds
Length = 3401
Score = 69.9 bits (35), Expect = 1e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| ||||| |||||||||||| || | || ||||||||||||||
Sbjct: 2982 tgggtcattgtccatctctatcctttcctcaaaggtctgatgggaaggcaaaacaggact 3041
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 3042 cctacaattgt 3052
>gb|AY573571.1| Populus tremula x Populus tremuloides cellulose synthase (CesA1)
mRNA, complete cds
Length = 3472
Score = 69.9 bits (35), Expect = 1e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
||||| ||||||||||| ||||| |||||||||||| || | || ||||||||||||||
Sbjct: 3054 tgggtcattgtccatctctatcctttcctcaaaggtctgatgggaaggcaaaacaggact 3113
Query: 79 ccgacaattgt 89
|| ||||||||
Sbjct: 3114 cctacaattgt 3124
>gb|CK102299.1|CK102299 G072P58.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G072P58 5', mRNA sequence
Length = 364
Score = 67.9 bits (34), Expect = 5e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || |||||||||||||||| || || |||||||||||| | | |||||
Sbjct: 74 cttctttgccttctgggtgattgtccatcactacccattcctcaaaggtctaatggggag 133
Query: 66 gcaaaacaggacac 79
||||||||||||||
Sbjct: 134 gcaaaacaggacac 147
>gb|DT526486.1|DT526486 WS02048.C21_C18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02048_C18 3', mRNA sequence
Length = 415
Score = 67.9 bits (34), Expect = 5e-010
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 20 gggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggacac 79
|||| ||||||||| | ||||| ||||||||||||||| | || |||||||||||||| |
Sbjct: 295 gggtcattgtccatttctatcctttcctcaaaggtttgatgggaaggcaaaacaggactc 236
Query: 80 cgacaattgt 89
| ||||||||
Sbjct: 235 ctacaattgt 226
>gb|BU817734.1|BU817734 UA20CPD09 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 385
Score = 65.9 bits (33), Expect = 2e-009
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 17 tttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagga 76
||||||| |||| |||| ||||||| |||||||| |||||| | || | ||||| | |
Sbjct: 204 tttgggtcattgcccatttgtatcctttcctcaagggtttgttgggtcgacaaaatcgta 263
Query: 77 caccgacaattgtcatcgtctggtc 101
|||||||||||||||||||||||||
Sbjct: 264 caccgacaattgtcatcgtctggtc 288
>gb|BU895092.1|BU895092 X019B09 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 626
Score = 65.9 bits (33), Expect = 2e-009
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 25 attgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggacaccgaca 84
||||||||||| ||||| |||||||||||| || | || |||||||||||||| || |||
Sbjct: 244 attgtccatctctatcctttcctcaaaggtctgatgggaaggcaaaacaggactcctaca 303
Query: 85 attgt 89
|||||
Sbjct: 304 attgt 308
>gb|CK092703.1|CK092703 G092P25.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G092P25 3', mRNA sequence
Length = 684
Score = 63.9 bits (32), Expect = 7e-009
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| ||||||| |||| |||| ||||||| |||||||| |||||| | || |
Sbjct: 540 cttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttgctgggtcg 481
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtc 101
|||||| | || || ||||||||||||||||||||
Sbjct: 480 gcaaaatcgtacgccaacaattgtcatcgtctggtc 445
>gb|CK097446.1|CK097446 UB51DPD11.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB51DPD11 3', mRNA sequence
Length = 481
Score = 63.9 bits (32), Expect = 7e-009
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| ||||||| |||| |||| ||||||| |||||||| |||||| | || |
Sbjct: 377 cttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttgctgggtcg 318
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtc 101
|||||| | || || ||||||||||||||||||||
Sbjct: 317 gcaaaatcgtacgccaacaattgtcatcgtctggtc 282
>gb|CK102806.1|CK102806 G092P25.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G092P25 5', mRNA sequence
Length = 448
Score = 63.9 bits (32), Expect = 7e-009
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| ||||||| |||| |||| ||||||| |||||||| |||||| | || |
Sbjct: 146 cttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttgctgggtcg 205
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtc 101
|||||| | || || ||||||||||||||||||||
Sbjct: 206 gcaaaatcgtacgccaacaattgtcatcgtctggtc 241
>gb|CV130875.1|CV130875 X9SP07b02 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 882
Score = 63.9 bits (32), Expect = 7e-009
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| ||||||| |||| |||| ||||||| |||||||| |||||| | || |
Sbjct: 705 cttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttgttgggtcg 764
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtc 101
|||||| | || || ||||||||||||||||||||
Sbjct: 765 gcaaaatcgaacgccaacaattgtcatcgtctggtc 800
>gb|CV252662.1|CV252662 PX0015.B21_I21 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_I21 3', mRNA sequence
Length = 667
Score = 63.9 bits (32), Expect = 7e-009
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| ||||||| |||| |||| ||||||| |||||||| |||||| | || |
Sbjct: 638 cttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttgttgggtcg 579
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtc 101
|||||| | || || ||||||||||||||||||||
Sbjct: 578 gcaaaatcgtacgccaacaattgtcatcgtctggtc 543
>gb|CV262834.1|CV262834 WS0202.B21_K05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0202_K05 3', mRNA sequence
Length = 513
Score = 63.9 bits (32), Expect = 7e-009
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| ||||||| |||| |||| ||||||| |||||||| |||||| | || |
Sbjct: 423 cttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttgttgggtcg 364
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtc 101
|||||| | || || ||||||||||||||||||||
Sbjct: 363 gcaaaatcgtacgccaacaattgtcatcgtctggtc 328
>gb|CV282433.1|CV282433 WS0184.B21_J19 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0184_J19 3', mRNA sequence
Length = 573
Score = 63.9 bits (32), Expect = 7e-009
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| ||||||| |||| |||| ||||||| |||||||| |||||| | || |
Sbjct: 420 cttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttgttgggtcg 361
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtc 101
|||||| | || || ||||||||||||||||||||
Sbjct: 360 gcaaaatcgaacgccaacaattgtcatcgtctggtc 325
>gb|DT493063.1|DT493063 WS02553.C21_E11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02553_E11 3', mRNA sequence
Length = 774
Score = 63.9 bits (32), Expect = 7e-009
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| ||||||| |||| |||| ||||||| |||||||| |||||| | || |
Sbjct: 468 cttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttgttgggtcg 409
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtc 101
|||||| | || || ||||||||||||||||||||
Sbjct: 408 gcaaaatcgtacgccaacaattgtcatcgtctggtc 373
>gb|DT500468.1|DT500468 PX0015.BR_I21 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0015_I21
5', mRNA sequence
Length = 687
Score = 63.9 bits (32), Expect = 7e-009
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| ||||||| |||| |||| ||||||| |||||||| |||||| | || |
Sbjct: 328 cttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttgttgggtcg 387
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtc 101
|||||| | || || ||||||||||||||||||||
Sbjct: 388 gcaaaatcgtacgccaacaattgtcatcgtctggtc 423
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,492
Number of Sequences: 369679
Number of extensions: 73492
Number of successful extensions: 19662
Number of sequences better than 0.5: 78
Number of HSP's better than 0.5 without gapping: 76
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19560
Number of HSP's gapped (non-prelim): 101
length of query: 671
length of database: 203,408,664
effective HSP length: 19
effective length of query: 652
effective length of database: 196,384,763
effective search space: 128042865476
effective search space used: 128042865476
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)