BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1804898.2.1
         (739 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DN484785.1|DN484785  K019P56.3pR Populus apical shoot cDN...    40   0.12 
gb|BU815652.1|BU815652  N044E10 Populus bark cDNA library Po...    38   0.46 
gb|BU885595.1|BU885595  R033E01 Populus root cDNA library Po...    38   0.46 
gb|CK090633.1|CK090633  F017P42.3pR Populus flower cDNA libr...    38   0.46 
gb|CK090847.1|CK090847  F027P85.3pR Populus flower cDNA libr...    38   0.46 
gb|CV131082.1|CV131082  L1P05f10 Populus stem seasonal libra...    38   0.46 
gb|CV277508.1|CV277508  WS0143.B21_M14 PTxD-IL-A-5 Populus t...    38   0.46 
gb|CX659398.1|CX659398  PO01030C04 Poplar SC cDNA library Po...    38   0.46 
gb|DV465368.1|DV465368  MTUNUL1.P38.F03 NUL Populus fremonti...    38   0.46 

>gb|DN484785.1|DN484785 K019P56.3pR Populus apical shoot cDNA library Populus tremula x
           Populus tremuloides cDNA clone K019P56 3', mRNA sequence
          Length = 315

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 gaagcaggggggaaggtgat 273
           ||||||||||||||||||||
Sbjct: 283 gaagcaggggggaaggtgat 264



>gb|BU815652.1|BU815652 N044E10 Populus bark cDNA library Populus tremula x Populus
           tremuloides cDNA 5 prime, mRNA sequence
          Length = 474

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 14  accgccgccgccgccgtcgtcgccgcc 40
           |||||||||||||||| || |||||||
Sbjct: 158 accgccgccgccgccgccgccgccgcc 132



>gb|BU885595.1|BU885595 R033E01 Populus root cDNA library Populus tremula x Populus
           tremuloides cDNA 5 prime, mRNA sequence
          Length = 521

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 14  accgccgccgccgccgtcgtcgccgcc 40
           |||||||||||||||| || |||||||
Sbjct: 171 accgccgccgccgccgccgccgccgcc 145



>gb|CK090633.1|CK090633 F017P42.3pR Populus flower cDNA library Populus trichocarpa cDNA
           clone F017P42 3', mRNA sequence
          Length = 789

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 13  caccgccgccgccgccgtcgtcgccgc 39
           ||||||||||||||||| || ||||||
Sbjct: 404 caccgccgccgccgccgccgccgccgc 430



>gb|CK090847.1|CK090847 F027P85.3pR Populus flower cDNA library Populus trichocarpa cDNA
           clone F027P85 3', mRNA sequence
          Length = 772

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 13  caccgccgccgccgccgtcgtcgccgc 39
           ||||||||||||||||| || ||||||
Sbjct: 385 caccgccgccgccgccgccgccgccgc 411



>gb|CV131082.1|CV131082 L1P05f10 Populus stem seasonal library Populus deltoides cDNA,
          mRNA sequence
          Length = 344

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 13 caccgccgccgccgccgtc 31
          |||||||||||||||||||
Sbjct: 64 caccgccgccgccgccgtc 82



>gb|CV277508.1|CV277508 WS0143.B21_M14 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
           cDNA clone WS0143_M14 3', mRNA sequence
          Length = 826

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 254 gaagcaggggggaaggtga 272
           |||||||||||||||||||
Sbjct: 489 gaagcaggggggaaggtga 471



>gb|CX659398.1|CX659398 PO01030C04 Poplar SC cDNA library Populus alba x Populus tremula
           var. glandulosa cDNA clone PO01030C04 5', mRNA sequence
          Length = 619

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 254 gaagcaggggggaaggtga 272
           |||||||||||||||||||
Sbjct: 345 gaagcaggggggaaggtga 363



>gb|DV465368.1|DV465368 MTUNUL1.P38.F03 NUL Populus fremontii x Populus angustifolia cDNA,
           mRNA sequence
          Length = 865

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 254 gaagcaggggggaaggtga 272
           |||||||||||||||||||
Sbjct: 863 gaagcaggggggaaggtga 845



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 62,640
Number of Sequences: 369679
Number of extensions: 62640
Number of successful extensions: 18236
Number of sequences better than  0.5: 9
Number of HSP's better than  0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18205
Number of HSP's gapped (non-prelim): 12
length of query: 739
length of database: 203,408,664
effective HSP length: 19
effective length of query: 720
effective length of database: 196,384,763
effective search space: 141397029360
effective search space used: 141397029360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)