BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1738980.2.1
         (917 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DN495503.1|DN495503  N056A05.5pR Populus bark cDNA librar...    42   0.037

>gb|DN495503.1|DN495503 N056A05.5pR Populus bark cDNA library Populus tremula x Populus
           tremuloides cDNA clone N056A05 5', mRNA sequence
          Length = 625

 Score = 42.1 bits (21), Expect = 0.037
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 792 cagcaagctcagtgttcgtgt 812
           |||||||||||||||||||||
Sbjct: 471 cagcaagctcagtgttcgtgt 491



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,223
Number of Sequences: 369679
Number of extensions: 70223
Number of successful extensions: 20539
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20538
Number of HSP's gapped (non-prelim): 1
length of query: 917
length of database: 203,408,664
effective HSP length: 19
effective length of query: 898
effective length of database: 196,384,763
effective search space: 176353517174
effective search space used: 176353517174
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)