BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738875.2.1
(761 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA927291.1|CA927291 MTU6CR.P7.C02 Aspen root cDNA Librar... 74 9e-012
gb|CA927347.1|CA927347 MTU6CR.P7.H05 Aspen root cDNA Librar... 68 5e-010
gb|CA927566.1|CA927566 MTU6TR.P10.D05 Aspen root cDNA Libra... 68 5e-010
gb|CA928566.1|CA928566 MTU6TR.P4.B06 Aspen root cDNA Librar... 68 5e-010
gb|CA928628.1|CA928628 MTU6TR.P4.H12 Aspen root cDNA Librar... 68 5e-010
gb|CV264180.1|CV264180 WS02023.B21_N09 PTxN-IB-N-A-11 Popul... 68 5e-010
gb|BP930892.1|BP930892 BP930892 full-length enriched poplar... 68 5e-010
gb|CA926134.1|CA926134 MTU6CR.P10.D08 Aspen root cDNA Libra... 66 2e-009
gb|CA926527.1|CA926527 MTU6CR.P16.A11 Aspen root cDNA Libra... 66 2e-009
gb|CA926911.1|CA926911 MTU6CR.P2.F06 Aspen root cDNA Librar... 66 2e-009
gb|CA926966.1|CA926966 MTU6CR.P3.D01 Aspen root cDNA Librar... 66 2e-009
gb|CA927111.1|CA927111 MTU6CR.P5.B01 Aspen root cDNA Librar... 66 2e-009
gb|CA929066.1|CA929066 MTU2CA.P11.E01 Aspen apex cDNA Libra... 66 2e-009
gb|CA929419.1|CA929419 MTU2CA.P13.E06 Aspen apex cDNA Libra... 66 2e-009
gb|CA929423.1|CA929423 MTU2CA.P13.E12 Aspen apex cDNA Libra... 66 2e-009
gb|CA929535.1|CA929535 MTU2CA.P15.B11 Aspen apex cDNA Libra... 66 2e-009
gb|CA929710.1|CA929710 MTU2CA.P1.F01 Aspen apex cDNA Librar... 66 2e-009
gb|CA929722.1|CA929722 MTU2CA.P1.G07 Aspen apex cDNA Librar... 66 2e-009
gb|CA929754.1|CA929754 MTU2CA.P2.C07 Aspen apex cDNA Librar... 66 2e-009
gb|CA929833.1|CA929833 MTU2CA.P3.D01 Aspen apex cDNA Librar... 66 2e-009
gb|CA929986.1|CA929986 MTU2CA.P5.E08 Aspen apex cDNA Librar... 66 2e-009
gb|CA930027.1|CA930027 MTU2CA.P6.B07 Aspen apex cDNA Librar... 66 2e-009
gb|CA930095.1|CA930095 MTU2CA.P7.A05 Aspen apex cDNA Librar... 66 2e-009
gb|CA930099.1|CA930099 MTU2CA.P7.A11 Aspen apex cDNA Librar... 66 2e-009
gb|CA930267.1|CA930267 MTU2CA.P9.D07 Aspen apex cDNA Librar... 66 2e-009
gb|CA930289.1|CA930289 MTU2CA.P9.F10 Aspen apex cDNA Librar... 66 2e-009
gb|CA930343.1|CA930343 MTU4CA.P21.D11 Aspen apex cDNA Libra... 66 2e-009
gb|CA930362.1|CA930362 MTU4CA.P21.F09 Aspen apex cDNA Libra... 66 2e-009
gb|CA930369.1|CA930369 MTU4CA.P21.G04 Aspen apex cDNA Libra... 66 2e-009
gb|CA930426.1|CA930426 MTU4CA.P22.E03 Aspen apex cDNA Libra... 66 2e-009
gb|CA930466.1|CA930466 MTU4CA.P22.H09 Aspen apex cDNA Libra... 66 2e-009
gb|CA930522.1|CA930522 MTU4CA.P23.E10 Aspen apex cDNA Libra... 66 2e-009
gb|CA930544.1|CA930544 MTU4CA.P23.G12 Aspen apex cDNA Libra... 66 2e-009
gb|CA930611.1|CA930611 MTU4CA.P24.E10 Aspen apex cDNA Libra... 66 2e-009
gb|CA930726.1|CA930726 MTU4CA.P25.H06 Aspen apex cDNA Libra... 66 2e-009
gb|CA928381.1|CA928381 MTU6TR.P2.A02 Aspen root cDNA Librar... 60 1e-007
gb|CV234989.1|CV234989 WS01217.B21_D18 PT-GT-FL-A-3 Populus... 60 1e-007
gb|CV237315.1|CV237315 WS01227.B21.1_G02 PT-GT-FL-A-3 Popul... 60 1e-007
gb|CV244334.1|CV244334 WS0254.B21_F23 PT-MB-N-A-15 Populus ... 60 1e-007
gb|CV282847.1|CV282847 WS0185.B21_M05 PTxD-IL-N-A-9 Populus... 60 1e-007
gb|DT479333.1|DT479333 WS02525.BR_I05 PT-MB-N-A-15 Populus ... 60 1e-007
gb|CA926892.1|CA926892 MTU6CR.P2.D11 Aspen root cDNA Librar... 58 5e-007
gb|CA929426.1|CA929426 MTU2CA.P13.F03 Aspen apex cDNA Libra... 58 5e-007
gb|CA930455.1|CA930455 MTU4CA.P22.G10 Aspen apex cDNA Libra... 58 5e-007
gb|CA930638.1|CA930638 MTU4CA.P24.H02 Aspen apex cDNA Libra... 58 5e-007
gb|CF119833.1|CF119833 MTU10CS.P6.H04 Aspen stem cDNA Libra... 54 8e-006
gb|BU825438.1|BU825438 UK108TG05 Populus apical shoot cDNA ... 52 3e-005
gb|CA924780.1|CA924780 MTU7CL.P9.H12 Aspen leaf cDNA Librar... 52 3e-005
gb|CA926543.1|CA926543 MTU6CR.P16.C05 Aspen root cDNA Libra... 52 3e-005
gb|CA927812.1|CA927812 MTU6TR.P13.C03 Aspen root cDNA Libra... 52 3e-005
gb|CK096628.1|CK096628 UB21CPD05.3pR Populus active cambium... 52 3e-005
gb|BP936875.1|BP936875 BP936875 full-length enriched poplar... 52 3e-005
gb|CA929199.1|CA929199 MTU2CA.P10.C10 Aspen apex cDNA Libra... 48 5e-004
gb|CN518475.1|CN518475 GQ0094.B3_M21 GQ009 Populus trichoca... 46 0.002
gb|CV261655.1|CV261655 WS02017.B21_G06 PTxN-IB-N-A-11 Popul... 46 0.002
gb|CV268093.1|CV268093 WS0204.B21_I16 PTxN-IB-N-A-11 Populu... 46 0.002
gb|CA923693.1|CA923693 MTU7CL.P13.G09 Aspen leaf cDNA Libra... 44 0.008
gb|CA926227.1|CA926227 MTU6CR.P11.E08 Aspen root cDNA Libra... 44 0.008
gb|CA927473.1|CA927473 MTU6CR.P9.E02 Aspen root cDNA Librar... 44 0.008
gb|CA930081.1|CA930081 MTU2CA.P6.H02 Aspen apex cDNA Librar... 44 0.008
gb|CA932978.1|CA932978 MTU5CS.P1.H06 Aspen stem cDNA Librar... 44 0.008
gb|CA928329.1|CA928329 MTU6TR.P1.D01 Aspen root cDNA Librar... 42 0.030
gb|CA928942.1|CA928942 MTU6TR.P8.F07 Aspen root cDNA Librar... 40 0.12
gb|DT521995.1|DT521995 WS02035.B21_M10 PTxN-IB-N-A-11 Popul... 40 0.12
gb|BI068353.1|BI068353 C020P61U Populus strain T89 leaves P... 36 1.9
gb|BU816148.1|BU816148 N061C01 Populus bark cDNA library Po... 36 1.9
gb|BU887915.1|BU887915 P001B08 Populus petioles cDNA librar... 36 1.9
gb|BU889575.1|BU889575 P022G03 Populus petioles cDNA librar... 36 1.9
gb|BU891810.1|BU891810 P055E02 Populus petioles cDNA librar... 36 1.9
gb|CA924439.1|CA924439 MTU7CL.P5.F10 Aspen leaf cDNA Librar... 36 1.9
gb|CA824845.1|CA824845 R49C10 two-month-old roots from clon... 36 1.9
gb|CF119013.1|CF119013 MTU10CS.P12.D05 Aspen stem cDNA Libr... 36 1.9
gb|CF227477.1|CF227477 PtaD6D9D0907 Poplar cDNA library fro... 36 1.9
gb|CK104560.1|CK104560 I042P76.5pR Populus senescing leaves... 36 1.9
gb|CV229190.1|CV229190 WS01912.B21_I04 PT-DX-N-A-10 Populus... 36 1.9
gb|CV267405.1|CV267405 WS02031.B21_K13 PTxN-IB-N-A-11 Popul... 36 1.9
gb|BP930169.1|BP930169 BP930169 full-length enriched poplar... 36 1.9
gb|BP936766.1|BP936766 BP936766 full-length enriched poplar... 36 1.9
gb|DT481261.1|DT481261 WS02531.BR_F23 PT-MB-N-A-15 Populus ... 36 1.9
gb|DT486576.1|DT486576 WS02531.B21_F23 PT-MB-N-A-15 Populus... 36 1.9
gb|CA929121.1|CA929121 MTU2CA.P2.F05 Aspen apex cDNA Librar... 34 7.4
gb|CN523612.1|CN523612 GQ015M06.T3_B08 GQ015 Populus tricho... 34 7.4
gb|CV235754.1|CV235754 WS01221.B21_H09 PT-GT-FL-A-3 Populus... 34 7.4
gb|CV260584.1|CV260584 WS02014.B21_H12 PTxN-IB-N-A-11 Popul... 34 7.4
gb|AY497385.1| Populus balsamifera subsp. trichocarpa micro... 34 7.4
>gb|CA927291.1|CA927291 MTU6CR.P7.C02 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 631
Score = 73.8 bits (37), Expect = 9e-012
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||| | |||||||||||| | |||||| | |||||||| ||
Sbjct: 540 gcgttcaagcctctgggcatcgcggactggaactcccttttctggatagcgcaccctggt 481
Query: 179 gggcccgccatcctcgaccaggtggaggccaag 211
|| || ||||| || ||||||||||||||||||
Sbjct: 480 ggaccagccattctagaccaggtggaggccaag 448
>gb|CA927347.1|CA927347 MTU6CR.P7.H05 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 696
Score = 67.9 bits (34), Expect = 5e-010
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||| | |||||||||||| | |||||| | |||||||| ||
Sbjct: 467 gcgttcaagcctctgggcatcgcggactggaactcccttttctggatagcgcaccctggt 526
Query: 179 gggcccgccatcctcgaccaggtggaggcc 208
|| || ||||| || |||||||||||||||
Sbjct: 527 ggaccagccattctagaccaggtggaggcc 556
>gb|CA927566.1|CA927566 MTU6TR.P10.D05 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 67.9 bits (34), Expect = 5e-010
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||| | |||||||||||| | |||||| | |||||||| ||
Sbjct: 561 gcgttcaagcctctgggcatcgcggactggaactcccttttctggatagcgcaccctggt 502
Query: 179 gggcccgccatcctcgaccaggtggaggccaaggtcgggctg 220
|| || ||||| || |||||||||||||| ||| | ||||||
Sbjct: 501 ggaccagccattctagaccaggtggaggctaagctggggctg 460
>gb|CA928566.1|CA928566 MTU6TR.P4.B06 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 534
Score = 67.9 bits (34), Expect = 5e-010
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||| | |||||||||||| | |||||| | |||||||| ||
Sbjct: 143 gcgttcaagcctctgggcatcgcggactggaactcccttttctggatagcgcaccctggt 84
Query: 179 gggcccgccatcctcgaccaggtggaggccaaggtcgggctg 220
|| || ||||| || |||||||||||||| ||| | ||||||
Sbjct: 83 ggaccagccattctagaccaggtggaggctaagctggggctg 42
>gb|CA928628.1|CA928628 MTU6TR.P4.H12 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 696
Score = 67.9 bits (34), Expect = 5e-010
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||| | |||||||||||| | |||||| | |||||||| ||
Sbjct: 143 gcgttcaagcctctgggcatcgcggactggaactcccttttctggatagcgcaccctggt 84
Query: 179 gggcccgccatcctcgaccaggtggaggccaaggtcgggctg 220
|| || ||||| || |||||||||||||| ||| | ||||||
Sbjct: 83 ggaccagccattctagaccaggtggaggctaagctggggctg 42
>gb|CV264180.1|CV264180 WS02023.B21_N09 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_N09 3', mRNA sequence
Length = 649
Score = 67.9 bits (34), Expect = 5e-010
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 573 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 514
Query: 179 gggcccgccatcctcgaccaggtggaggccaaggtcgggctg 220
|| || || || || |||||||||||||| ||| | ||||||
Sbjct: 513 ggaccagcaattctagaccaggtggaggctaagttggggctg 472
>gb|BP930892.1|BP930892 BP930892 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-016_D10.r 3', mRNA sequence
Length = 599
Score = 67.9 bits (34), Expect = 5e-010
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 549 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 490
Query: 179 gggcccgccatcctcgaccaggtggaggccaaggtcgggctg 220
|| || || || || |||||||||||||| ||| | ||||||
Sbjct: 489 ggaccagcaattctagaccaggtggaggctaagttggggctg 448
>gb|CA926134.1|CA926134 MTU6CR.P10.D08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 710
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 488 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 429
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 428 ggaccagcaattctagaccaggtggaggc 400
>gb|CA926527.1|CA926527 MTU6CR.P16.A11 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 543
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 486 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 427
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 426 ggaccagcaattctagaccaggtggaggc 398
>gb|CA926911.1|CA926911 MTU6CR.P2.F06 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 675
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 426 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 367
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 366 ggaccagcgattctagaccaggtggaggc 338
>gb|CA926966.1|CA926966 MTU6CR.P3.D01 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 672
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 426 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 367
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 366 ggaccagcgattctagaccaggtggaggc 338
>gb|CA927111.1|CA927111 MTU6CR.P5.B01 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 672
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 345 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 404
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 405 ggaccagcgattctagaccaggtggaggc 433
>gb|CA929066.1|CA929066 MTU2CA.P11.E01 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 494
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 487 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 428
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 427 ggaccagcaattctagaccaggtggaggc 399
>gb|CA929419.1|CA929419 MTU2CA.P13.E06 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 687
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 488 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 429
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 428 ggaccagcaattctagaccaggtggaggc 400
>gb|CA929423.1|CA929423 MTU2CA.P13.E12 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 674
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 345 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 404
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 405 ggaccagcgattctagaccaggtggaggc 433
>gb|CA929535.1|CA929535 MTU2CA.P15.B11 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 600
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 344 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 403
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 404 ggaccagcgattctagaccaggtggaggc 432
>gb|CA929710.1|CA929710 MTU2CA.P1.F01 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 691
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 426 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 367
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 366 ggaccagcgattctagaccaggtggaggc 338
>gb|CA929722.1|CA929722 MTU2CA.P1.G07 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 688
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 345 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 404
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 405 ggaccagcgattctagaccaggtggaggc 433
Score = 34.2 bits (17), Expect = 7.4
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 392 ctcaccgtcgagaccgtcgtgctccacag 420
||||| |||||||| || |||||||||||
Sbjct: 618 ctcactgtcgagactgtggtgctccacag 646
>gb|CA929754.1|CA929754 MTU2CA.P2.C07 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 595
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 345 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 404
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 405 ggaccagcgattctagaccaggtggaggc 433
>gb|CA929833.1|CA929833 MTU2CA.P3.D01 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 588
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 426 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 367
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 366 ggaccagcgattctagaccaggtggaggc 338
>gb|CA929986.1|CA929986 MTU2CA.P5.E08 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 431
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 426 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 367
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 366 ggaccagcgattctagaccaggtggaggc 338
>gb|CA930027.1|CA930027 MTU2CA.P6.B07 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 610
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 485 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 426
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 425 ggaccagcaattctagaccaggtggaggc 397
>gb|CA930095.1|CA930095 MTU2CA.P7.A05 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 620
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 426 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 367
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 366 ggaccagcgattctagaccaggtggaggc 338
>gb|CA930099.1|CA930099 MTU2CA.P7.A11 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 666
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 488 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 429
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 428 ggaccagcaattctagaccaggtggaggc 400
>gb|CA930267.1|CA930267 MTU2CA.P9.D07 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 652
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 425 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 366
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 365 ggaccagcgattctagaccaggtggaggc 337
>gb|CA930289.1|CA930289 MTU2CA.P9.F10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 571
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 345 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 404
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 405 ggaccagcgattctagaccaggtggaggc 433
>gb|CA930343.1|CA930343 MTU4CA.P21.D11 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 691
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 345 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 404
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 405 ggaccagcgattctagaccaggtggaggc 433
>gb|CA930362.1|CA930362 MTU4CA.P21.F09 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 673
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 426 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 367
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 366 ggaccagcgattctagaccaggtggaggc 338
Score = 34.2 bits (17), Expect = 7.4
Identities = 26/29 (89%)
Strand = Plus / Minus
Query: 392 ctcaccgtcgagaccgtcgtgctccacag 420
||||| || |||||||| |||||||||||
Sbjct: 153 ctcactgttgagaccgtggtgctccacag 125
>gb|CA930369.1|CA930369 MTU4CA.P21.G04 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 681
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 426 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 367
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 366 ggaccagcgattctagaccaggtggaggc 338
>gb|CA930426.1|CA930426 MTU4CA.P22.E03 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 618
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 345 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 404
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 405 ggaccagcaattctagaccaggtggaggc 433
>gb|CA930466.1|CA930466 MTU4CA.P22.H09 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 620
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 345 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 404
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 405 ggaccagcgattctagaccaggtggaggc 433
>gb|CA930522.1|CA930522 MTU4CA.P23.E10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 648
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 345 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 404
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 405 ggaccagcgattctagaccaggtggaggc 433
>gb|CA930544.1|CA930544 MTU4CA.P23.G12 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 682
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 426 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 367
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 366 ggaccagcgattctagaccaggtggaggc 338
>gb|CA930611.1|CA930611 MTU4CA.P24.E10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 687
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 426 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 367
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 366 ggaccagcgattctagaccaggtggaggc 338
>gb|CA930726.1|CA930726 MTU4CA.P25.H06 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 659
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 426 gcgttcaagcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 367
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 366 ggaccagcgattctagaccaggtggaggc 338
>gb|CA928381.1|CA928381 MTU6TR.P2.A02 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 715
Score = 60.0 bits (30), Expect = 1e-007
Identities = 84/102 (82%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||| | |||||||||||| |||||| | |||||||| ||
Sbjct: 490 gcgttcaagcccctgggcatcgcggactggaactcccctttctggatagcgcaccctggt 431
Query: 179 gggcccgccatcctcgaccaggtggaggccaaggtcgggctg 220
|| || ||||| || |||||||||||||| ||| | ||||||
Sbjct: 430 ggaccagccattctagaccaggtggaggctaagctggggctg 389
>gb|CV234989.1|CV234989 WS01217.B21_D18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01217_D18 3', mRNA sequence
Length = 570
Score = 60.0 bits (30), Expect = 1e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 134 ggcatctccgactggaactccatcttctgggtggcgcaccccggcgggcccgccatcctc 193
|||||||| || ||||||||| | |||||| | |||||||| || |||||||| || ||
Sbjct: 523 ggcatctcggattggaactcccttttctggattgcgcaccctggtgggcccgcaattctg 464
Query: 194 gaccaggtggaggc 207
||||||||||||||
Sbjct: 463 gaccaggtggaggc 450
Score = 40.1 bits (20), Expect = 0.12
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 362 tggggcgtcctcttcggcttcggcccgggactcaccgtcgagaccgtcgtgctcca 417
||||||||||| ||||| ||||| || || || || || ||||| |||||||||||
Sbjct: 295 tggggcgtccttttcgggttcgggcctgggcttactgttgagactgtcgtgctcca 240
>gb|CV237315.1|CV237315 WS01227.B21.1_G02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_G02 3', mRNA sequence
Length = 852
Score = 60.0 bits (30), Expect = 1e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 134 ggcatctccgactggaactccatcttctgggtggcgcaccccggcgggcccgccatcctc 193
|||||||| || ||||||||| | |||||| | |||||||| || |||||||| || ||
Sbjct: 524 ggcatctcggattggaactcccttttctggattgcgcaccctggtgggcccgcaattctg 465
Query: 194 gaccaggtggaggc 207
||||||||||||||
Sbjct: 464 gaccaggtggaggc 451
Score = 40.1 bits (20), Expect = 0.12
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 362 tggggcgtcctcttcggcttcggcccgggactcaccgtcgagaccgtcgtgctcca 417
||||||||||| ||||| ||||| || || || || || ||||| |||||||||||
Sbjct: 296 tggggcgtccttttcgggttcgggcctgggcttactgttgagactgtcgtgctcca 241
Score = 36.2 bits (18), Expect = 1.9
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 59 cacctgctcaaggacgtgcccgggct 84
||||| |||||||| |||||||||||
Sbjct: 599 caccttctcaaggatgtgcccgggct 574
>gb|CV244334.1|CV244334 WS0254.B21_F23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0254_F23 3', mRNA sequence
Length = 873
Score = 60.0 bits (30), Expect = 1e-007
Identities = 84/102 (82%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| ||||||||||| | |||||| | |||||||| ||
Sbjct: 619 gcgttcaagcctctaggcatctcggactggaactctcttttctggatagcgcaccctggt 560
Query: 179 gggcccgccatcctcgaccaggtggaggccaaggtcgggctg 220
|| || || || || |||||||||||||| ||| | ||||||
Sbjct: 559 ggaccagcaattctagaccaggtggaggctaagttggggctg 518
>gb|CV282847.1|CV282847 WS0185.B21_M05 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0185_M05 3', mRNA sequence
Length = 745
Score = 60.0 bits (30), Expect = 1e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 134 ggcatctccgactggaactccatcttctgggtggcgcaccccggcgggcccgccatcctc 193
|||||||| || ||||||||| | |||||| | |||||||| || |||||||| || ||
Sbjct: 516 ggcatctcggattggaactcccttttctggattgcgcaccctggtgggcccgcaattctg 457
Query: 194 gaccaggtggaggc 207
||||||||||||||
Sbjct: 456 gaccaggtggaggc 443
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 362 tggggcgtcctcttcggcttcggcccgggactcaccgtcgagaccgtcgtgctccacag 420
||||||||||||||||| ||||| || || || || || ||||| || |||||||||||
Sbjct: 288 tggggcgtcctcttcgggttcgggcctgggcttactgttgagacagtggtgctccacag 230
Score = 38.2 bits (19), Expect = 0.48
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 38 cgcgaggtggggctcaccttccacctgctcaaggacgtgcccgggct 84
||||| || ||||| || || ||||| |||||||| |||||||||||
Sbjct: 612 cgcgaagttgggcttacatttcaccttctcaaggatgtgcccgggct 566
>gb|DT479333.1|DT479333 WS02525.BR_I05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_I05 5', mRNA sequence
Length = 901
Score = 60.0 bits (30), Expect = 1e-007
Identities = 84/102 (82%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| ||||||||||| | |||||| | |||||||| ||
Sbjct: 529 gcgttcaagcctctaggcatctcggactggaactctcttttctggatagcgcaccctggt 588
Query: 179 gggcccgccatcctcgaccaggtggaggccaaggtcgggctg 220
|| || || || || |||||||||||||| ||| | ||||||
Sbjct: 589 ggaccagcaattctagaccaggtggaggctaagttggggctg 630
>gb|CA926892.1|CA926892 MTU6CR.P2.D11 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 611
Score = 58.0 bits (29), Expect = 5e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||| ||| || |||||||| |||||||||||| | |||||| | |||||||| ||
Sbjct: 125 gcgttcaggcctctgggcatctcggactggaactcccttttctggatagcgcaccctggt 184
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 185 ggaccagcaattctagaccaggtggaggc 213
>gb|CA929426.1|CA929426 MTU2CA.P13.F03 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 587
Score = 58.0 bits (29), Expect = 5e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||| ||| | |||||| | |||||||| ||
Sbjct: 345 gcgttcaagcctctgggcatctcggactggaattcccttttctggatagcgcaccctggt 404
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 405 ggaccagcgattctagaccaggtggaggc 433
>gb|CA930455.1|CA930455 MTU4CA.P22.G10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 652
Score = 58.0 bits (29), Expect = 5e-007
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||| ||| | |||||| | |||||||| ||
Sbjct: 426 gcgttcaagcctctgggcatctcggactggaattcccttttctggatagcgcaccctggt 367
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 366 ggaccagcgattctagaccaggtggaggc 338
>gb|CA930638.1|CA930638 MTU4CA.P24.H02 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 681
Score = 58.0 bits (29), Expect = 5e-007
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||||| |||||||| ||| | |||||| | |||||||| ||
Sbjct: 426 gcgttcaagcctctgggcatctcggactggaattcccttttctggatagcgcaccctggt 367
Query: 179 gggcccgccatcctcgaccaggtggaggc 207
|| || || || || ||||||||||||||
Sbjct: 366 ggaccagcgattctagaccaggtggaggc 338
>gb|CF119833.1|CF119833 MTU10CS.P6.H04 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 607
Score = 54.0 bits (27), Expect = 8e-006
Identities = 85/103 (82%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcg-caccccgg 177
||||||||||| || |||||| | |||||||||||| | |||||| | ||| ||||| ||
Sbjct: 144 gcgttcaagcctctgggcatcgcggactggaactcccttttctggatagcgccaccctgg 85
Query: 178 cgggcccgccatcctcgaccaggtggaggccaaggtcgggctg 220
|| || ||||| || |||||||||||||| ||| | ||||||
Sbjct: 84 tggaccagccattctagaccaggtggaggctaagctggggctg 42
>gb|BU825438.1|BU825438 UK108TG05 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 485
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 134 ggcatctccgactggaactccatcttctgggtggcgcaccccggcgggcccgccatcctc 193
|||||||| || ||||||||| | |||||| | |||||||| || || ||||| || ||
Sbjct: 29 ggcatctcggattggaactcccttttctggattgcgcaccctggtggtcccgcaattctg 88
Query: 194 gaccaggtggaggc 207
||||||||||||||
Sbjct: 89 gaccaggtggaggc 102
>gb|CA924780.1|CA924780 MTU7CL.P9.H12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 648
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 134 ggcatctccgactggaactccatcttctgggtggcgcaccccggcgggcccgccatcctc 193
|||||||| || ||||||||| | |||||| | |||||||| || || ||||| || ||
Sbjct: 117 ggcatctcggattggaactcccttttctggattgcgcaccctggtggtcccgcaattctg 58
Query: 194 gaccaggtggaggc 207
||||||||||||||
Sbjct: 57 gaccaggtggaggc 44
>gb|CA926543.1|CA926543 MTU6CR.P16.C05 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 543
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 134 ggcatctccgactggaactccatcttctgggtggcgcaccccggcgggcccgccatcctc 193
|||||||| ||||| |||||| | |||||| | |||||||| || || || ||||| ||
Sbjct: 538 ggcatctcggactgaaactcccttttctggatagcgcaccctggtggaccagccattcta 479
Query: 194 gaccaggtggaggc 207
||||||||||||||
Sbjct: 478 gaccaggtggaggc 465
>gb|CA927812.1|CA927812 MTU6TR.P13.C03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 755
Score = 52.0 bits (26), Expect = 3e-005
Identities = 83/102 (81%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgggtggcgcaccccggc 178
||||||||||| || |||||| | |||||||||||| | |||||| | |||||||| ||
Sbjct: 615 gcgttcaagcctctgggcatcgcggactggaactcccttttctggatagcgcaccctggt 674
Query: 179 gggcccgccatcctcgaccaggtggaggccaaggtcgggctg 220
|| || ||||| || |||| |||||||| ||| | ||||||
Sbjct: 675 ggaccagccattctagacccagtggaggctaagctggggctg 716
>gb|CK096628.1|CK096628 UB21CPD05.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB21CPD05 3', mRNA sequence
Length = 637
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 134 ggcatctccgactggaactccatcttctgggtggcgcaccccggcgggcccgccatcctc 193
|||||||| || ||||||||| | |||||| | |||||||| || || ||||| || ||
Sbjct: 348 ggcatctcggattggaactcccttttctggattgcgcaccctggtggtcccgcaattctg 289
Query: 194 gaccaggtggaggc 207
||||||||||||||
Sbjct: 288 gaccaggtggaggc 275
>gb|BP936875.1|BP936875 BP936875 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-097_L20.r 3', mRNA sequence
Length = 621
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 134 ggcatctccgactggaactccatcttctgggtggcgcaccccggcgggcccgccatcctc 193
|||||||| || ||||||||| | |||||| | |||||||| || || ||||| || ||
Sbjct: 571 ggcatctcggattggaactcccttttctggattgcgcaccctggtggtcccgcaattctg 512
Query: 194 gaccaggtggaggc 207
||||||||||||||
Sbjct: 511 gaccaggtggaggc 498
>gb|CA929199.1|CA929199 MTU2CA.P10.C10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 377
Score = 48.1 bits (24), Expect = 5e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactcc 154
||||||||||| || |||||||| ||||||||||||
Sbjct: 341 gcgttcaagcctctgggcatctcggactggaactcc 376
>gb|CN518475.1|CN518475 GQ0094.B3_M21 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0094_M21 5', mRNA sequence
Length = 358
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 362 tggggcgtcctcttcggcttcggcccgggactcaccgtcgagaccgtcgtgctccacag 420
||||||||||||||||| ||||| || || || || || ||||| || |||||||||||
Sbjct: 88 tggggcgtcctcttcgggttcgggcctgggcttactgttgagacagtggtgctccacag 146
>gb|CV261655.1|CV261655 WS02017.B21_G06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02017_G06 3', mRNA sequence
Length = 334
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 362 tggggcgtcctcttcggcttcggcccgggactcaccgtcgagaccgtcgtgctccacag 420
||||||||||||||||| ||||| || || || || || ||||| || |||||||||||
Sbjct: 288 tggggcgtcctcttcgggttcgggcctgggcttactgttgagacagtggtgctccacag 230
>gb|CV268093.1|CV268093 WS0204.B21_I16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0204_I16 3', mRNA sequence
Length = 851
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 362 tggggcgtcctcttcggcttcggcccgggactcaccgtcgagaccgtcgtgctccacag 420
||||||||||||||||| ||||| || || || || || ||||| || |||||||||||
Sbjct: 288 tggggcgtcctcttcgggttcgggcctgggcttactgttgagacagtggtgctccacag 230
>gb|CA923693.1|CA923693 MTU7CL.P13.G09 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 506
Score = 44.1 bits (22), Expect = 0.008
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 134 ggcatctccgactggaactccatcttctgggtggcgcaccccggcgggcccgccatcctc 193
|||||||| || ||||||||| | |||||| | |||||||| || || || || || ||
Sbjct: 117 ggcatctcggattggaactcccttttctggattgcgcaccctggtggtcctgcaattctg 58
Query: 194 gaccaggtggaggc 207
||||||||||||||
Sbjct: 57 gaccaggtggaggc 44
>gb|CA926227.1|CA926227 MTU6CR.P11.E08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 647
Score = 44.1 bits (22), Expect = 0.008
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 134 ggcatctccgactggaactccatcttctgggtggcgcaccccggcgggcccgccatcctc 193
|||||||| || ||||||||| | |||||| | |||||||| || || || || || ||
Sbjct: 117 ggcatctcggattggaactcccttttctggattgcgcaccctggtggtcctgcaattctg 58
Query: 194 gaccaggtggaggc 207
||||||||||||||
Sbjct: 57 gaccaggtggaggc 44
>gb|CA927473.1|CA927473 MTU6CR.P9.E02 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 504
Score = 44.1 bits (22), Expect = 0.008
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 134 ggcatctccgactggaactccatcttctgggtggcgcaccccggcgggcccgccatcctc 193
|||||||| || ||||||||| | || ||| | |||||||| || || ||||| || ||
Sbjct: 388 ggcatctcggattggaactcccttttttggattgcgcaccctggtggacccgcaattctg 447
Query: 194 gaccaggtggaggc 207
||||||||||||||
Sbjct: 448 gaccaggtggaggc 461
>gb|CA930081.1|CA930081 MTU2CA.P6.H02 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 570
Score = 44.1 bits (22), Expect = 0.008
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 134 ggcatctccgactggaactccatcttctgggtggcgcaccccggcgggcccgccatcctc 193
|||||||| || ||||||||| | |||||| | |||||||| || || || || || ||
Sbjct: 117 ggcatctcggattggaactcccttttctggattgcgcaccctggtggtcctgcaattctg 58
Query: 194 gaccaggtggaggc 207
||||||||||||||
Sbjct: 57 gaccaggtggaggc 44
>gb|CA932978.1|CA932978 MTU5CS.P1.H06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 506
Score = 44.1 bits (22), Expect = 0.008
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 134 ggcatctccgactggaactccatcttctgggtggcgcaccccggcgggcccgccatcctc 193
|||||||| || ||||||||| | || ||| | |||||||| || || ||||| || ||
Sbjct: 390 ggcatctcggattggaactcccttttttggattgcgcaccctggtggacccgcaattctg 449
Query: 194 gaccaggtggaggc 207
||||||||||||||
Sbjct: 450 gaccaggtggaggc 463
>gb|CA928329.1|CA928329 MTU6TR.P1.D01 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 691
Score = 42.1 bits (21), Expect = 0.030
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactccatcttctgg 163
||||||||||| || |||||| | |||||||||||| | ||||||
Sbjct: 641 gcgttcaagcctctgggcatcgcggactggaactcccttttctgg 685
>gb|CA928942.1|CA928942 MTU6TR.P8.F07 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 684
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 119 gcgttcaagccgctcggcatctccgactggaactcc 154
||||||||||| || |||||| | ||||||||||||
Sbjct: 649 gcgttcaagcctctgggcatcgcggactggaactcc 684
>gb|DT521995.1|DT521995 WS02035.B21_M10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02035_M10 3', mRNA sequence
Length = 849
Score = 40.1 bits (20), Expect = 0.12
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 8 gactcggagggcgccatcgacggccacctccgcgaggtggggctcaccttccacctgctc 67
||||| || ||||||||||| || ||| | || ||||| || | ||||| ||||||||
Sbjct: 678 gactctgacggcgccatcgatggacacttacgtgaggttggtttaacctttcacctgcta 619
Query: 68 aaggacgtgcccgggctcatctccaagaacat 99
||||| || || ||||| ||||| ||||||||
Sbjct: 618 aaggatgttcctgggctaatctcaaagaacat 587
>gb|BI068353.1|BI068353 C020P61U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 293
Score = 36.2 bits (18), Expect = 1.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 521 taataatgtgctctctgc 538
||||||||||||||||||
Sbjct: 228 taataatgtgctctctgc 245
>gb|BU816148.1|BU816148 N061C01 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 320
Score = 36.2 bits (18), Expect = 1.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 521 taataatgtgctctctgc 538
||||||||||||||||||
Sbjct: 266 taataatgtgctctctgc 283
>gb|BU887915.1|BU887915 P001B08 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 385
Score = 36.2 bits (18), Expect = 1.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 521 taataatgtgctctctgc 538
||||||||||||||||||
Sbjct: 331 taataatgtgctctctgc 348
>gb|BU889575.1|BU889575 P022G03 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 411
Score = 36.2 bits (18), Expect = 1.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 521 taataatgtgctctctgc 538
||||||||||||||||||
Sbjct: 272 taataatgtgctctctgc 289
>gb|BU891810.1|BU891810 P055E02 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 541
Score = 36.2 bits (18), Expect = 1.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 521 taataatgtgctctctgc 538
||||||||||||||||||
Sbjct: 488 taataatgtgctctctgc 505
>gb|CA924439.1|CA924439 MTU7CL.P5.F10 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 506
Score = 36.2 bits (18), Expect = 1.9
Identities = 60/74 (81%)
Strand = Plus / Minus
Query: 134 ggcatctccgactggaactccatcttctgggtggcgcaccccggcgggcccgccatcctc 193
|||||||| || |||| |||| | |||||| | |||||||| || || || || || ||
Sbjct: 117 ggcatctcggattggagctcccttttctggattgcgcaccctggtggtcctgcaattctg 58
Query: 194 gaccaggtggaggc 207
||||||||||||||
Sbjct: 57 gaccaggtggaggc 44
>gb|CA824845.1|CA824845 R49C10 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 356
Score = 36.2 bits (18), Expect = 1.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 521 taataatgtgctctctgc 538
||||||||||||||||||
Sbjct: 241 taataatgtgctctctgc 258
>gb|CF119013.1|CF119013 MTU10CS.P12.D05 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 720
Score = 36.2 bits (18), Expect = 1.9
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 521 taataatgtgctctctgc 538
||||||||||||||||||
Sbjct: 56 taataatgtgctctctgc 39
>gb|CF227477.1|CF227477 PtaD6D9D0907 Poplar cDNA library from wood tissues Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 258
Score = 36.2 bits (18), Expect = 1.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 521 taataatgtgctctctgc 538
||||||||||||||||||
Sbjct: 178 taataatgtgctctctgc 195
>gb|CK104560.1|CK104560 I042P76.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I042P76 5', mRNA sequence
Length = 550
Score = 36.2 bits (18), Expect = 1.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 521 taataatgtgctctctgc 538
||||||||||||||||||
Sbjct: 516 taataatgtgctctctgc 533
>gb|CV229190.1|CV229190 WS01912.B21_I04 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01912_I04 3', mRNA sequence
Length = 416
Score = 36.2 bits (18), Expect = 1.9
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 521 taataatgtgctctctgc 538
||||||||||||||||||
Sbjct: 82 taataatgtgctctctgc 65
>gb|CV267405.1|CV267405 WS02031.B21_K13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_K13 3', mRNA sequence
Length = 848
Score = 36.2 bits (18), Expect = 1.9
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 521 taataatgtgctctctgc 538
||||||||||||||||||
Sbjct: 84 taataatgtgctctctgc 67
>gb|BP930169.1|BP930169 BP930169 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-006_L22.r 3', mRNA sequence
Length = 620
Score = 36.2 bits (18), Expect = 1.9
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 521 taataatgtgctctctgc 538
||||||||||||||||||
Sbjct: 81 taataatgtgctctctgc 64
>gb|BP936766.1|BP936766 BP936766 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-096_G05.r 3', mRNA sequence
Length = 573
Score = 36.2 bits (18), Expect = 1.9
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 521 taataatgtgctctctgc 538
||||||||||||||||||
Sbjct: 81 taataatgtgctctctgc 64
>gb|DT481261.1|DT481261 WS02531.BR_F23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02531_F23 5', mRNA sequence
Length = 736
Score = 36.2 bits (18), Expect = 1.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 602 atcatcatatataataat 619
||||||||||||||||||
Sbjct: 126 atcatcatatataataat 143
>gb|DT486576.1|DT486576 WS02531.B21_F23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02531_F23 3', mRNA sequence
Length = 816
Score = 36.2 bits (18), Expect = 1.9
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 602 atcatcatatataataat 619
||||||||||||||||||
Sbjct: 691 atcatcatatataataat 674
>gb|CA929121.1|CA929121 MTU2CA.P2.F05 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 345
Score = 34.2 bits (17), Expect = 7.4
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 65 ctcaaggacgtgcccgggctcatct 89
|||||||| ||||||||||| ||||
Sbjct: 291 ctcaaggatgtgcccgggcttatct 315
>gb|CN523612.1|CN523612 GQ015M06.T3_B08 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M06_B08 5', mRNA sequence
Length = 732
Score = 34.2 bits (17), Expect = 7.4
Identities = 30/35 (85%)
Strand = Plus / Plus
Query: 120 cgttcaagccgctcggcatctccgactggaactcc 154
|||||||| | || |||||||| ||||| ||||||
Sbjct: 673 cgttcaagnctctgggcatctcggactgnaactcc 707
>gb|CV235754.1|CV235754 WS01221.B21_H09 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01221_H09 3', mRNA sequence
Length = 460
Score = 34.2 bits (17), Expect = 7.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 744 ggctggtttaattatat 760
|||||||||||||||||
Sbjct: 203 ggctggtttaattatat 187
>gb|CV260584.1|CV260584 WS02014.B21_H12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02014_H12 3', mRNA sequence
Length = 375
Score = 34.2 bits (17), Expect = 7.4
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 607 catatataataatatctctatatat 631
||||||||||||||| | |||||||
Sbjct: 223 catatataataatatatatatatat 199
>gb|AY497385.1| Populus balsamifera subsp. trichocarpa microsatellite ORPM_028
sequence
Length = 624
Score = 34.2 bits (17), Expect = 7.4
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 607 catatataataatatctctatatat 631
||||||||||||||| | |||||||
Sbjct: 418 catatataataatatatatatatat 442
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 69,321
Number of Sequences: 369679
Number of extensions: 69321
Number of successful extensions: 19531
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19400
Number of HSP's gapped (non-prelim): 130
length of query: 761
length of database: 203,408,664
effective HSP length: 19
effective length of query: 742
effective length of database: 196,384,763
effective search space: 145717494146
effective search space used: 145717494146
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)