BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738863.2.3
(730 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI119634.1|BI119634 F002P68Y Populus flower cDNA library... 38 0.46
gb|CK090396.1|CK090396 F002P68.3pR Populus flower cDNA libr... 38 0.46
gb|CK090637.1|CK090637 F017P62.3pR Populus flower cDNA libr... 38 0.46
gb|CK100848.1|CK100848 F002P68.5pR Populus flower cDNA libr... 38 0.46
gb|CK101022.1|CK101022 F017P62.5pR Populus flower cDNA libr... 38 0.46
gb|CN521223.1|CN521223 GQ0113.B3_A11 GQ011 Populus trichoca... 38 0.46
gb|AJ776752.1|AJ776752 AJ776752 Populus euphratica root 3-6... 38 0.46
gb|CV233477.1|CV233477 WS01211.B21_B22 PT-GT-FL-A-3 Populus... 38 0.46
gb|CV233716.1|CV233716 WS01212.B21_B22 PT-GT-FL-A-3 Populus... 38 0.46
gb|CV237113.1|CV237113 WS01226.B21.1_P08 PT-GT-FL-A-3 Popul... 38 0.46
gb|CV259967.1|CV259967 WS02012.B21_M11 PTxN-IB-N-A-11 Popul... 38 0.46
gb|CV262264.1|CV262264 WS02019.B21_B07 PTxN-IB-N-A-11 Popul... 38 0.46
gb|CV264551.1|CV264551 WS02024.B21_N06 PTxN-IB-N-A-11 Popul... 38 0.46
gb|CV267587.1|CV267587 WS02032.B21_C14 PTxN-IB-N-A-11 Popul... 38 0.46
gb|CV270109.1|CV270109 WS0151.B21_B20 PTxN-IB-A-6 Populus t... 38 0.46
gb|CV270619.1|CV270619 WS0152.B21_H16 PTxN-IB-A-6 Populus t... 38 0.46
gb|CV272739.1|CV272739 WS0158.B21_I24 PTxN-IB-A-6 Populus t... 38 0.46
gb|CX172727.1|CX172727 B05_69-84_03.ab1 leaf inoculated wit... 38 0.46
gb|BP935078.1|BP935078 BP935078 full-length enriched poplar... 38 0.46
gb|DT476396.1|DT476396 WS01229.B21_H08 PT-GT-FL-A-3 Populus... 38 0.46
gb|DT521034.1|DT521034 WS02033.B21_D15 PTxN-IB-N-A-11 Popul... 38 0.46
gb|DT521141.1|DT521141 WS02033.B21_I02 PTxN-IB-N-A-11 Popul... 38 0.46
gb|DT523985.1|DT523985 WS02041.C21.1_D09 PTxN-IB-N-A-11 Pop... 38 0.46
gb|DT524386.1|DT524386 WS02042.C21.1_H23 PTxN-IB-N-A-11 Pop... 38 0.46
>gb|BI119634.1|BI119634 F002P68Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 488
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 373 tcgacatgagaggatgtcg 391
>gb|CK090396.1|CK090396 F002P68.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F002P68 3', mRNA sequence
Length = 567
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 196 tcgacatgagaggatgtcg 178
>gb|CK090637.1|CK090637 F017P62.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F017P62 3', mRNA sequence
Length = 546
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 175 tcgacatgagaggatgtcg 157
>gb|CK100848.1|CK100848 F002P68.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F002P68 5', mRNA sequence
Length = 541
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 372 tcgacatgagaggatgtcg 390
>gb|CK101022.1|CK101022 F017P62.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F017P62 5', mRNA sequence
Length = 548
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 372 tcgacatgagaggatgtcg 390
>gb|CN521223.1|CN521223 GQ0113.B3_A11 GQ011 Populus trichocarpa x Populus deltoides cDNA
clone GQ0113_A11 5', mRNA sequence
Length = 580
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 357 tcgacatgagaggatgtcg 375
>gb|AJ776752.1|AJ776752 AJ776752 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400018A01F1, mRNA sequence
Length = 386
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 308 tcgacatgagaggatgtcg 326
>gb|CV233477.1|CV233477 WS01211.B21_B22 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01211_B22 3', mRNA sequence
Length = 553
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 169 tcgacatgagaggatgtcg 151
>gb|CV233716.1|CV233716 WS01212.B21_B22 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01212_B22 3', mRNA sequence
Length = 782
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 169 tcgacatgagaggatgtcg 151
>gb|CV237113.1|CV237113 WS01226.B21.1_P08 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01226_P08 3', mRNA sequence
Length = 855
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 169 tcgacatgagaggatgtcg 151
>gb|CV259967.1|CV259967 WS02012.B21_M11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_M11 3', mRNA sequence
Length = 594
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 204 tcgacatgagaggatgtcg 186
>gb|CV262264.1|CV262264 WS02019.B21_B07 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02019_B07 3', mRNA sequence
Length = 410
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 176 tcgacatgagaggatgtcg 158
>gb|CV264551.1|CV264551 WS02024.B21_N06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02024_N06 3', mRNA sequence
Length = 415
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 188 tcgacatgagaggatgtcg 170
>gb|CV267587.1|CV267587 WS02032.B21_C14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02032_C14 3', mRNA sequence
Length = 444
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 187 tcgacatgagaggatgtcg 169
>gb|CV270109.1|CV270109 WS0151.B21_B20 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_B20 3', mRNA sequence
Length = 556
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 163 tcgacatgagaggatgtcg 145
>gb|CV270619.1|CV270619 WS0152.B21_H16 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0152_H16 3', mRNA sequence
Length = 689
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 188 tcgacatgagaggatgtcg 170
>gb|CV272739.1|CV272739 WS0158.B21_I24 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0158_I24 3', mRNA sequence
Length = 372
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 175 tcgacatgagaggatgtcg 157
>gb|CX172727.1|CX172727 B05_69-84_03.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 554
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 391 tcgacatgagaggatgtcg 409
>gb|BP935078.1|BP935078 BP935078 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-073_G15.r 3', mRNA sequence
Length = 510
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 200 tcgacatgagaggatgtcg 182
>gb|DT476396.1|DT476396 WS01229.B21_H08 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_H08 3', mRNA sequence
Length = 709
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 169 tcgacatgagaggatgtcg 151
>gb|DT521034.1|DT521034 WS02033.B21_D15 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02033_D15 3', mRNA sequence
Length = 609
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 187 tcgacatgagaggatgtcg 169
>gb|DT521141.1|DT521141 WS02033.B21_I02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02033_I02 3', mRNA sequence
Length = 389
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 196 tcgacatgagaggatgtcg 178
>gb|DT523985.1|DT523985 WS02041.C21.1_D09 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02041_D09 3', mRNA sequence
Length = 545
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 158 tcgacatgagaggatgtcg 140
>gb|DT524386.1|DT524386 WS02042.C21.1_H23 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02042_H23 3', mRNA sequence
Length = 467
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 tcgacatgagaggatgtcg 413
|||||||||||||||||||
Sbjct: 186 tcgacatgagaggatgtcg 168
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 83,588
Number of Sequences: 369679
Number of extensions: 83588
Number of successful extensions: 23235
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23211
Number of HSP's gapped (non-prelim): 24
length of query: 730
length of database: 203,408,664
effective HSP length: 19
effective length of query: 711
effective length of database: 196,384,763
effective search space: 139629566493
effective search space used: 139629566493
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)