BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716365.2.1
(936 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT485334.1|DT485334 WS02527.B21_O22 PT-MB-N-A-15 Populus... 192 2e-047
gb|DT515685.1|DT515685 WS02429.B21.1_D22 PTxD-ICC-N-A-14 Po... 192 2e-047
gb|CV232433.1|CV232433 WS0197.B21_J03 PT-DX-N-A-10 Populus ... 186 1e-045
gb|DT523539.1|DT523539 WS02039.B21_P11 PTxN-IB-N-A-11 Popul... 186 1e-045
gb|CV261322.1|CV261322 WS02016.B21_H12 PTxN-IB-N-A-11 Popul... 176 1e-042
gb|DT482867.1|DT482867 WS02521.B21_A02 PT-MB-N-A-15 Populus... 139 2e-031
gb|DT507221.1|DT507221 WS02417.BR_K22 PTxD-ICC-N-A-14 Popul... 113 1e-023
gb|DT511863.1|DT511863 WS02417.B21_K22 PTxD-ICC-N-A-14 Popu... 113 1e-023
gb|AI162152.1|AI162152 A012P77U Hybrid aspen plasmid librar... 111 5e-023
gb|BI119621.1|BI119621 F002P40Y Populus flower cDNA library... 111 5e-023
gb|CK098382.1|CK098382 A012P77.5pR Hybrid aspen plasmid lib... 100 2e-019
gb|BU813391.1|BU813391 N009H07 Populus bark cDNA library Po... 80 2e-013
gb|DN494990.1|DN494990 N009H07.5pR Populus bark cDNA librar... 80 2e-013
gb|BI131092.1|BI131092 G115P15Y Populus cambium cDNA librar... 78 7e-013
gb|CA931263.1|CA931263 MTU2TA.P4.H08 Aspen apex cDNA Librar... 74 1e-011
gb|CN523462.1|CN523462 GQ015M10.T3_B08 GQ015 Populus tricho... 64 1e-008
gb|DT476893.1|DT476893 WS01231.B21_D17 PT-GT-FL-A-3 Populus... 58 6e-007
gb|CF228348.1|CF228348 PtaXM0011H7H0715 Poplar cDNA library... 54 1e-005
gb|BI129456.1|BI129456 G090P88Y Populus cambium cDNA librar... 50 2e-004
gb|DT522833.1|DT522833 WS02038.B21_B02 PTxN-IB-N-A-11 Popul... 44 0.010
gb|DT473316.1|DT473316 WS01229.BR_E10 PT-GT-FL-A-3 Populus ... 42 0.038
gb|DT520021.1|DT520021 WS02446.B21.1_F15 PTxD-ICC-N-A-14 Po... 42 0.038
gb|DN493286.1|DN493286 X076F05.3pR Populus wood cDNA librar... 40 0.15
>gb|DT485334.1|DT485334 WS02527.B21_O22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02527_O22 3', mRNA sequence
Length = 904
Score = 192 bits (97), Expect = 2e-047
Identities = 346/429 (80%)
Strand = Plus / Plus
Query: 339 atctcaactggcttggggatatcaggtggagtggcacacctgattaatgcccaattaaca 398
|||||||||||||| ||||| || ||||| || ||||| | |||||||||||||| ||
Sbjct: 228 atctcaactggcttagggatctcgggtggggtagcacagcgtattaatgcccaattcacg 287
Query: 399 ccttcaaagaacgggtgctgttttatttctgtggctccacgcttatacgctaatcgatgc 458
||||||||||| ||||| || |||||||| ||||| || || || | ||||||| ||||
Sbjct: 288 ccttcaaagaaggggtgttgctttatttcagtggcgcctcgtttggatgctaatctatgc 347
Query: 459 tgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaactcactacaggt 518
|| ||||| || | ||||| ||||| || |||||||| || |||||||| || || |||
Sbjct: 348 tgtggttcttttacaagcaaaccccttatgagatccctagctgcaaaactgacgactggt 407
Query: 519 gattctgggaaccttaagggttgtccaactacgttgaacaatgtcgccctattcccagaa 578
||||||||||| | | || || ||||| || ||||||||||| || | || |||||
Sbjct: 408 gattctgggaatcgaagaggctggccaacaacattgaacaatgtggctcggtttccagat 467
Query: 579 cctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaatgtccaccag 638
|| ||||| || || || ||||| | || ||||| | || || ||||| |||||||||
Sbjct: 468 cccttgaagggagttttcccgaataagagttcatatagaaaaattccaaaagtccaccag 527
Query: 639 tctacagcacttccatgcccctcgccctttataatttcaggtgccaagtactcatgggtg 698
|| |||||||||||||| || || ||||| || || ||||||||||| ||||| |||||
Sbjct: 528 tcaacagcacttccatgaccttcacccttgatgatctcaggtgccaaatactcgtgggtt 587
Query: 699 ccaacaaaagacatagaccttgcatctgtcggctctgcaacaagctcaggaagtggtctg 758
|||||||||||||| |||||||||||||| |||||||| | |||||||| | ||| |||
Sbjct: 588 ccaacaaaagacattgaccttgcatctgttggctctgctatgagctcaggtaatggactg 647
Query: 759 acctgattt 767
|| ||||||
Sbjct: 648 acttgattt 656
>gb|DT515685.1|DT515685 WS02429.B21.1_D22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_D22 3', mRNA sequence
Length = 894
Score = 192 bits (97), Expect = 2e-047
Identities = 346/429 (80%)
Strand = Plus / Plus
Query: 339 atctcaactggcttggggatatcaggtggagtggcacacctgattaatgcccaattaaca 398
|||||||||||||| ||||| || ||||| || ||||| | |||||||||||||| ||
Sbjct: 222 atctcaactggcttagggatctcgggtggggtagcacagcgtattaatgcccaattcacg 281
Query: 399 ccttcaaagaacgggtgctgttttatttctgtggctccacgcttatacgctaatcgatgc 458
||||||||||| ||||| || |||||||| ||||| || || || | ||||||| ||||
Sbjct: 282 ccttcaaagaaggggtgttgctttatttcagtggcgcctcgtttggatgctaatctatgc 341
Query: 459 tgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaactcactacaggt 518
|| ||||| || | ||||| ||||| || |||||||| || |||||||| || || |||
Sbjct: 342 tgtggttcttttacaagcaaaccccttatgagatccctagctgcaaaactgacgactggt 401
Query: 519 gattctgggaaccttaagggttgtccaactacgttgaacaatgtcgccctattcccagaa 578
||||||||||| | | || || ||||| || ||||||||||| || | || |||||
Sbjct: 402 gattctgggaatcgaagaggctggccaacaacattgaacaatgtggctcggtttccagat 461
Query: 579 cctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaatgtccaccag 638
|| ||||| || || || ||||| | || ||||| | || || ||||| |||||||||
Sbjct: 462 cccttgaagggagttttcccgaataagagttcatatagaaaaattccaaaagtccaccag 521
Query: 639 tctacagcacttccatgcccctcgccctttataatttcaggtgccaagtactcatgggtg 698
|| |||||||||||||| || || ||||| || || ||||||||||| ||||| |||||
Sbjct: 522 tcaacagcacttccatgaccttcacccttgatgatctcaggtgccaaatactcgtgggtt 581
Query: 699 ccaacaaaagacatagaccttgcatctgtcggctctgcaacaagctcaggaagtggtctg 758
|||||||||||||| |||||||||||||| |||||||| | |||||||| | ||| |||
Sbjct: 582 ccaacaaaagacattgaccttgcatctgttggctctgctatgagctcaggtaatggactg 641
Query: 759 acctgattt 767
|| ||||||
Sbjct: 642 acttgattt 650
>gb|CV232433.1|CV232433 WS0197.B21_J03 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0197_J03 3', mRNA sequence
Length = 745
Score = 186 bits (94), Expect = 1e-045
Identities = 322/398 (80%)
Strand = Plus / Plus
Query: 339 atctcaactggcttggggatatcaggtggagtggcacacctgattaatgcccaattaaca 398
|||||||||||||| ||||| || ||||| || ||||| | |||||||||||||| ||
Sbjct: 276 atctcaactggcttagggatctcgggtggggtagcacagcgtattaatgcccaattcacg 335
Query: 399 ccttcaaagaacgggtgctgttttatttctgtggctccacgcttatacgctaatcgatgc 458
||||||||||| ||||| || |||||||| ||||| || || || | ||||||| ||||
Sbjct: 336 ccttcaaagaaggggtgttgctttatttcagtggcgcctcgtttggatgctaatctatgc 395
Query: 459 tgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaactcactacaggt 518
|| ||||| || | ||||| ||||| || |||||||| || |||||||| || || |||
Sbjct: 396 tgtggttcttttacaagcaaaccccttatgagatccctagctgcaaaactgacaaccggt 455
Query: 519 gattctgggaaccttaagggttgtccaactacgttgaacaatgtcgccctattcccagaa 578
||||||||||| | | || || ||||| || ||||||||||| || | || |||||
Sbjct: 456 gattctgggaatcgaagaggctggccaacaacattgaacaatgtggctcggtttccagat 515
Query: 579 cctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaatgtccaccag 638
|| ||||| || || || ||||| | || ||||| | || || ||||| |||||||||
Sbjct: 516 cccttgaagggagttttcccgaataagagttcatatagaaaaattccaaaagtccaccag 575
Query: 639 tctacagcacttccatgcccctcgccctttataatttcaggtgccaagtactcatgggtg 698
|| |||||||||||||| || || ||||| || || ||||||||||| ||||| |||||
Sbjct: 576 tcaacagcacttccatgaccttcacccttgatgatctcaggtgccaaatactcgtgggtt 635
Query: 699 ccaacaaaagacatagaccttgcatctgtcggctctgc 736
|||||||||||||| |||||||||||||| ||||||||
Sbjct: 636 ccaacaaaagacattgaccttgcatctgttggctctgc 673
>gb|DT523539.1|DT523539 WS02039.B21_P11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02039_P11 3', mRNA sequence
Length = 925
Score = 186 bits (94), Expect = 1e-045
Identities = 322/398 (80%)
Strand = Plus / Plus
Query: 339 atctcaactggcttggggatatcaggtggagtggcacacctgattaatgcccaattaaca 398
|||||||||||||| ||||| |||||||| || ||||| | |||||||||||||| ||
Sbjct: 300 atctcaactggcttagggatctcaggtggggtagcacagcgtattaatgcccaattcacg 359
Query: 399 ccttcaaagaacgggtgctgttttatttctgtggctccacgcttatacgctaatcgatgc 458
||||||||||| ||||| || |||||||| || || || || || | ||||||| ||||
Sbjct: 360 ccttcaaagaaggggtgttgctttatttcagttgcgcctcgtttggatgctaatctatgc 419
Query: 459 tgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaactcactacaggt 518
|| ||||| || | ||||| ||||| || |||||||| || |||||||| || || |||
Sbjct: 420 tgtggttcttttacaagcaaaccccttatgagatccctagctgcaaaactgacaactggt 479
Query: 519 gattctgggaaccttaagggttgtccaactacgttgaacaatgtcgccctattcccagaa 578
||||||||||| | | || || ||||| || ||||||||||| || | || |||||
Sbjct: 480 gattctgggaatcgaagaggctggccaacaacattgaacaatgtggctcggtttccagat 539
Query: 579 cctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaatgtccaccag 638
|| ||||| || || || ||||| | || ||||| | || || ||||| |||||||||
Sbjct: 540 cccttgaagggagttttcccgaataagagttcatatagaaaaattccaaaagtccaccag 599
Query: 639 tctacagcacttccatgcccctcgccctttataatttcaggtgccaagtactcatgggtg 698
|| |||||||||||||| || || ||||| || || ||||||||||| ||||| |||||
Sbjct: 600 tcaacagcacttccatgaccttcacccttgatgatctcaggtgccaaatactcgtgggtt 659
Query: 699 ccaacaaaagacatagaccttgcatctgtcggctctgc 736
|||||||||||||| |||||||||||||| ||||||||
Sbjct: 660 ccaacaaaagacattgaccttgcatctgttggctctgc 697
>gb|CV261322.1|CV261322 WS02016.B21_H12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_H12 3', mRNA sequence
Length = 844
Score = 176 bits (89), Expect = 1e-042
Identities = 314/389 (80%)
Strand = Plus / Plus
Query: 339 atctcaactggcttggggatatcaggtggagtggcacacctgattaatgcccaattaaca 398
|||||||||||||| ||||| |||||||| || ||||| | |||||||||||||| ||
Sbjct: 307 atctcaactggcttagggatctcaggtggggtagcacagcgtattaatgcccaattcacg 366
Query: 399 ccttcaaagaacgggtgctgttttatttctgtggctccacgcttatacgctaatcgatgc 458
||||||||||| ||||| || |||||||| || || || || || | ||||||| ||||
Sbjct: 367 ccttcaaagaaggggtgttgctttatttcagttgcgcctcgtttggatgctaatctatgc 426
Query: 459 tgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaactcactacaggt 518
|| ||||| || | ||||| ||||| || |||||||| || |||||||| || || |||
Sbjct: 427 tgtggttcttttacaagcaaaccccttatgagatccctagctgcaaaactgacaactggt 486
Query: 519 gattctgggaaccttaagggttgtccaactacgttgaacaatgtcgccctattcccagaa 578
||||||||||| | || || || ||||| || |||||||||| || | || |||||
Sbjct: 487 gattctgggaatcgaaaaggctggccaacaacattgaacaatggggctcggtttccagat 546
Query: 579 cctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaatgtccaccag 638
|| ||||| || || || ||||| | || ||||| | || || ||||| |||||||||
Sbjct: 547 cccttgaagggagttttcccgaataagagttcatatagaaaaattccaaaagtccaccag 606
Query: 639 tctacagcacttccatgcccctcgccctttataatttcaggtgccaagtactcatgggtg 698
|| |||||||||||||| || || ||||| || || ||||||||||| ||||| |||||
Sbjct: 607 tcaacagcacttccatgaccttcacccttgatgatctcaggtgccaaatactcgtgggtt 666
Query: 699 ccaacaaaagacatagaccttgcatctgt 727
|||||||||||||| ||||||||||||||
Sbjct: 667 ccaacaaaagacattgaccttgcatctgt 695
>gb|DT482867.1|DT482867 WS02521.B21_A02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_A02 3', mRNA sequence
Length = 749
Score = 139 bits (70), Expect = 2e-031
Identities = 316/398 (79%)
Strand = Plus / Plus
Query: 339 atctcaactggcttggggatatcaggtggagtggcacacctgattaatgcccaattaaca 398
|||||||||||||| ||||| || ||||| || ||||| | |||||||||||||| |||
Sbjct: 259 atctcaactggctttgggatctcgggtggggtagcacagcgtattaatgcccaattcaca 318
Query: 399 ccttcaaagaacgggtgctgttttatttctgtggctccacgcttatacgctaatcgatgc 458
||||||||||| || || || || ||||| || || || || || || || |||| |||
Sbjct: 319 ccttcaaagaagggatgttgcttaatttcagttgcccctcgtttgtatgccaatctatgt 378
Query: 459 tgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaactcactacaggt 518
|| ||||| || | ||||| ||||| ||||||||||||| |||||||| || || |||
Sbjct: 379 tgcggttcttttacaagcaaaccccttataagatcccttggtgcaaaactaacaactggt 438
Query: 519 gattctgggaaccttaagggttgtccaactacgttgaacaatgtcgccctattcccagaa 578
||||||||||| | | || || ||||| || ||||||||||| || | ||| ||||||
Sbjct: 439 gattctgggaatcgaagaggctggccaacaacattgaacaatgtggctcgatttccagaa 498
Query: 579 cctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaatgtccaccag 638
|| || || || || || || || | |||||||| | || || ||||| ||||||||
Sbjct: 499 cccttaaagggagttttaccaaataagagctcatatagaaagatcccaaaagtccaccaa 558
Query: 639 tctacagcacttccatgcccctcgccctttataatttcaggtgccaagtactcatgggtg 698
|| |||||||||||||| || || ||||| || || ||||| |||| ||||| |||||
Sbjct: 559 tcaacagcacttccatgaccttcacccttgatgatctcaggagccagatactcgtgggtc 618
Query: 699 ccaacaaaagacatagaccttgcatctgtcggctctgc 736
|||||||| ||||| ||||||||||| || ||||||||
Sbjct: 619 ccaacaaacgacattgaccttgcatcagttggctctgc 656
>gb|DT507221.1|DT507221 WS02417.BR_K22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_K22 5', mRNA sequence
Length = 644
Score = 113 bits (57), Expect = 1e-023
Identities = 252/317 (79%)
Strand = Plus / Minus
Query: 339 atctcaactggcttggggatatcaggtggagtggcacacctgattaatgcccaattaaca 398
|||||||||||||| ||||| || ||||| || ||||| | |||||||||||||| ||
Sbjct: 356 atctcaactggcttagggatctcgggtggggtagcacagcgtattaatgcccaattcacg 297
Query: 399 ccttcaaagaacgggtgctgttttatttctgtggctccacgcttatacgctaatcgatgc 458
||||||||||| ||||| || |||||||| ||||| || || || | ||||||| ||||
Sbjct: 296 ccttcaaagaaggggtgttgctttatttcagtggcgcctcgtttggatgctaatctatgc 237
Query: 459 tgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaactcactacaggt 518
|| ||||| || | ||||| ||||| || |||||||| || |||||||| || || |||
Sbjct: 236 tgtggttcttttacaagcaaaccccttatgagatccctagctgcaaaactgacgactggt 177
Query: 519 gattctgggaaccttaagggttgtccaactacgttgaacaatgtcgccctattcccagaa 578
||||||||||| | | || || ||||| || ||||||||||| || | || |||||
Sbjct: 176 gattctgggaatcgaagaggctggccaacaacattgaacaatgtggctcggtttccagat 117
Query: 579 cctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaatgtccaccag 638
|| ||||| || || || ||||| | || ||||| | || || ||||| |||||||||
Sbjct: 116 cccttgaagggagttttcccgaataagagttcatatagaaaaattccaaaagtccaccag 57
Query: 639 tctacagcacttccatg 655
|| ||||||||||||||
Sbjct: 56 tcaacagcacttccatg 40
>gb|DT511863.1|DT511863 WS02417.B21_K22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_K22 3', mRNA sequence
Length = 644
Score = 113 bits (57), Expect = 1e-023
Identities = 252/317 (79%)
Strand = Plus / Plus
Query: 339 atctcaactggcttggggatatcaggtggagtggcacacctgattaatgcccaattaaca 398
|||||||||||||| ||||| || ||||| || ||||| | |||||||||||||| ||
Sbjct: 289 atctcaactggcttagggatctcgggtggggtagcacagcgtattaatgcccaattcacg 348
Query: 399 ccttcaaagaacgggtgctgttttatttctgtggctccacgcttatacgctaatcgatgc 458
||||||||||| ||||| || |||||||| ||||| || || || | ||||||| ||||
Sbjct: 349 ccttcaaagaaggggtgttgctttatttcagtggcgcctcgtttggatgctaatctatgc 408
Query: 459 tgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaactcactacaggt 518
|| ||||| || | ||||| ||||| || |||||||| || |||||||| || || |||
Sbjct: 409 tgtggttcttttacaagcaaaccccttatgagatccctagctgcaaaactgacgactggt 468
Query: 519 gattctgggaaccttaagggttgtccaactacgttgaacaatgtcgccctattcccagaa 578
||||||||||| | | || || ||||| || ||||||||||| || | || |||||
Sbjct: 469 gattctgggaatcgaagaggctggccaacaacattgaacaatgtggctcggtttccagat 528
Query: 579 cctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaatgtccaccag 638
|| ||||| || || || ||||| | || ||||| | || || ||||| |||||||||
Sbjct: 529 cccttgaagggagttttcccgaataagagttcatatagaaaaattccaaaagtccaccag 588
Query: 639 tctacagcacttccatg 655
|| ||||||||||||||
Sbjct: 589 tcaacagcacttccatg 605
>gb|AI162152.1|AI162152 A012P77U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 481
Score = 111 bits (56), Expect = 5e-023
Identities = 95/108 (87%)
Strand = Plus / Minus
Query: 605 aagctcatacaagaatatgccaaatgtccaccagtctacagcacttccatgcccctcgcc 664
||||||||| | ||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 244 aagctcatagagaaatatcccaaatgtccaccaatctacagcacttccatggccctcgcc 185
Query: 665 ctttataatttcaggtgccaagtactcatgggtgccaacaaaagacat 712
|| || |||||||| |||||||||||||| || || |||||||||||
Sbjct: 184 tttaattatttcaggggccaagtactcatgcgtacccacaaaagacat 137
>gb|BI119621.1|BI119621 F002P40Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 397
Score = 111 bits (56), Expect = 5e-023
Identities = 113/132 (85%)
Strand = Plus / Minus
Query: 636 cagtctacagcacttccatgcccctcgccctttataatttcaggtgccaagtactcatgg 695
||||| |||||||||||||| || || ||||| || || ||||||||||| ||||| |||
Sbjct: 397 cagtcaacagcacttccatgaccttcacccttgatgatctcaggtgccaaatactcgtgg 338
Query: 696 gtgccaacaaaagacatagaccttgcatctgtcggctctgcaacaagctcaggaagtggt 755
|| |||||||||||||| |||||||||||||| |||||||| | |||||||| | |||
Sbjct: 337 gttccaacaaaagacattgaccttgcatctgttggctctgctatgagctcaggtaatgga 278
Query: 756 ctgacctgattt 767
||||| ||||||
Sbjct: 277 ctgacttgattt 266
>gb|CK098382.1|CK098382 A012P77.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A012P77 5', mRNA sequence
Length = 614
Score = 99.6 bits (50), Expect = 2e-019
Identities = 80/90 (88%)
Strand = Plus / Minus
Query: 605 aagctcatacaagaatatgccaaatgtccaccagtctacagcacttccatgcccctcgcc 664
||||||||| | ||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 265 aagctcatagagaaatatcccaaatgtccaccaatctacagcacttccatggccctcgcc 206
Query: 665 ctttataatttcaggtgccaagtactcatg 694
|| || |||||||| ||||||||||||||
Sbjct: 205 tttaattatttcaggggccaagtactcatg 176
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 404 aaagaacgggtgctgttttatttctgtggctcc 436
|||||| || |||||||||||||| ||||||||
Sbjct: 466 aaagaatggatgctgttttatttcagtggctcc 434
>gb|BU813391.1|BU813391 N009H07 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 386
Score = 79.8 bits (40), Expect = 2e-013
Identities = 115/140 (82%)
Strand = Plus / Minus
Query: 614 caagaatatgccaaatgtccaccagtctacagcacttccatgcccctcgccctttataat 673
|||||| || |||||||||||||| || || ||||| ||||| || || ||||| |||||
Sbjct: 374 caagaaaataccaaatgtccaccaatcaactgcactgccatggccttctcccttgataat 315
Query: 674 ttcaggtgccaagtactcatgggtgccaacaaaagacatagaccttgcatctgtcggctc 733
|||||| |||| ||| |||||||| || ||||| ||||| |||| ||| |||| || ||
Sbjct: 314 ttcaggggccaggtattcatgggttcccacaaaggacattgaccgagcagctgttggttc 255
Query: 734 tgcaacaagctcaggaagtg 753
||| || ||||| |||||||
Sbjct: 254 tgccacgagctctggaagtg 235
>gb|DN494990.1|DN494990 N009H07.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N009H07 5', mRNA sequence
Length = 760
Score = 79.8 bits (40), Expect = 2e-013
Identities = 115/140 (82%)
Strand = Plus / Minus
Query: 614 caagaatatgccaaatgtccaccagtctacagcacttccatgcccctcgccctttataat 673
|||||| || |||||||||||||| || || ||||| ||||| || || ||||| |||||
Sbjct: 378 caagaaaataccaaatgtccaccaatcaactgcactgccatggccttctcccttgataat 319
Query: 674 ttcaggtgccaagtactcatgggtgccaacaaaagacatagaccttgcatctgtcggctc 733
|||||| |||| ||| |||||||| || ||||| ||||| |||| ||| |||| || ||
Sbjct: 318 ttcaggggccaggtattcatgggttcccacaaaggacattgaccgagcagctgttggttc 259
Query: 734 tgcaacaagctcaggaagtg 753
||| || ||||| |||||||
Sbjct: 258 tgccacgagctctggaagtg 239
>gb|BI131092.1|BI131092 G115P15Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 150
Score = 77.8 bits (39), Expect = 7e-013
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 630 gtccaccagtctacagcacttccatgcccctcgccctttataatttcaggtgccaagtac 689
|||||||| || |||||||||||||| || || ||||| || || ||||| |||| |||
Sbjct: 149 gtccaccaatcgacagcacttccatgaccttcacccttgatgatctcaggagccagatac 90
Query: 690 tcatgggtgccaacaaaagacatagaccttgcatctgtcggctctgc 736
|| ||||| |||||||| ||||| ||||||||||| || ||||||||
Sbjct: 89 tcgtgggtcccaacaaacgacattgaccttgcatcagttggctctgc 43
>gb|CA931263.1|CA931263 MTU2TA.P4.H08 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 491
Score = 73.8 bits (37), Expect = 1e-011
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 606 agctcatacaagaatatgccaaatgtccaccagtctacagcacttccatgcccctcgccc 665
||||||| |||||| ||||||||||||||||| || || ||||| |||||||| || |||
Sbjct: 89 agctcatgcaagaaaatgccaaatgtccaccaatcaactgcactgccatgcccttctccc 30
Query: 666 tttataatttcaggtgccaagtactcatg 694
|| || |||||||| |||| ||| |||||
Sbjct: 29 ttgatgatttcaggggccaggtattcatg 1
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 360 tcaggtggagtggcacacctgattaatgcccaattaacaccttcaaagaacgggtgctg 418
|||||||| ||| |||||| |||| |||||||| |||||||||||||| ||||||||
Sbjct: 335 tcaggtggcgtgctacacctaattagagcccaattcacaccttcaaagaaagggtgctg 277
>gb|CN523462.1|CN523462 GQ015M10.T3_B08 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M10_B08 5', mRNA sequence
Length = 732
Score = 63.9 bits (32), Expect = 1e-008
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 624 ccaaatgtccaccagtctacagcacttccatgcccctcgccctttataatttcaggtgcc 683
|||||||||||||| ||||||||||||||||| ||||| || || || |||||| ||
Sbjct: 99 ccaaatgtccaccaatctacagcacttccatggccctcacctttaattatttcannngcn 40
Query: 684 aagtactcatg 694
| |||||||||
Sbjct: 39 angtactcatg 29
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 404 aaagaacgggtgctgttttatttctgtggctcc 436
|||||| || |||||||||||||| ||||||||
Sbjct: 319 aaagaatggatgctgttttatttcagtggctcc 287
>gb|DT476893.1|DT476893 WS01231.B21_D17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_D17 3', mRNA sequence
Length = 992
Score = 58.0 bits (29), Expect = 6e-007
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 606 agctcatacaagaatatgccaaatgtccaccagtctacagcacttccatgcccctcgccc 665
|||||| ||| ||| || ||||| |||||||| || |||||||| ||||||||||| ||
Sbjct: 533 agctcaaacaggaagattccaaacgtccaccaatcaacagcactgccatgcccctcacct 592
Query: 666 tttataatttcaggtgccaagtactcatgggtgccaacaaa 706
|| || || ||||| |||| ||| |||||||| || |||||
Sbjct: 593 ttgatgatctcaggggccaggtattcatgggttccgacaaa 633
>gb|CF228348.1|CF228348 PtaXM0011H7H0715 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 645
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 678 ggtgccaagtactcatgggtgccaacaaaagacat 712
|||||||||||||||||||| |||||||| |||||
Sbjct: 248 ggtgccaagtactcatgggtcccaacaaacgacat 214
>gb|BI129456.1|BI129456 G090P88Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 520
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 606 agctcatacaagaatatgccaaatgtccaccagtctacagcacttccatgcccctcgccc 665
|||||| ||||||| || || ||||||||||| || |||||||| ||||| ||||| ||
Sbjct: 459 agctcaaacaagaagattccgaatgtccaccaatcaacagcactgccatgaccctcacct 400
Query: 666 tttataatttcaggtgccaagtactcatgggtgccaacaaa 706
|| || || || || |||| ||| ||||| || ||||||||
Sbjct: 399 ttgatgatctctggagccaggtattcatgagttccaacaaa 359
>gb|DT522833.1|DT522833 WS02038.B21_B02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02038_B02 3', mRNA sequence
Length = 324
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 339 atctcaactggcttggggatatcaggtggagtggcaca 376
|||||||||||||| ||||| |||||||| || |||||
Sbjct: 279 atctcaactggcttagggatctcaggtggggtagcaca 316
>gb|DT473316.1|DT473316 WS01229.BR_E10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_E10 5', mRNA sequence
Length = 909
Score = 42.1 bits (21), Expect = 0.038
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 785 ctttttatcttttttctcctt 805
|||||||||||||||||||||
Sbjct: 220 ctttttatcttttttctcctt 200
>gb|DT520021.1|DT520021 WS02446.B21.1_F15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02446_F15 3', mRNA sequence
Length = 911
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 404 aaagaacgggtgctgttttatttctgtggctcc 436
|||||| || |||||||||||||| ||||||||
Sbjct: 725 aaagaatggatgctgttttatttcagtggctcc 757
>gb|DN493286.1|DN493286 X076F05.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X076F05 3', mRNA sequence
Length = 436
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 197 gtctaagtggaaaaggtaga 216
||||||||||||||||||||
Sbjct: 161 gtctaagtggaaaaggtaga 180
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 111,539
Number of Sequences: 369679
Number of extensions: 111539
Number of successful extensions: 30975
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30921
Number of HSP's gapped (non-prelim): 52
length of query: 936
length of database: 203,408,664
effective HSP length: 19
effective length of query: 917
effective length of database: 196,384,763
effective search space: 180084827671
effective search space used: 180084827671
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)