BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716233.2.1
(1153 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT488868.1|DT488868 WS02537.B21_K16 PT-MB-N-A-15 Populus... 139 3e-031
gb|DT488933.1|DT488933 WS02537.B21_N13 PT-MB-N-A-15 Populus... 131 7e-029
gb|BU884119.1|BU884119 R006B07 Populus root cDNA library Po... 125 4e-027
gb|DT515781.1|DT515781 WS02429.B21.1_I03 PTxD-ICC-N-A-14 Po... 123 2e-026
gb|CV280148.1|CV280148 WS0135.B21_A14 PTxD-IL-FL-A-4 Populu... 109 2e-022
gb|CX655055.1|CX655055 PO01004C07 Poplar SC cDNA library Po... 109 2e-022
gb|CX656379.1|CX656379 PO01001B08 Poplar SC cDNA library Po... 109 2e-022
gb|DT503000.1|DT503000 WS0135.BR_A14 PTxD-IL-FL-A-4 Populus... 109 2e-022
gb|CK090790.1|CK090790 F025P07.3pR Populus flower cDNA libr... 105 4e-021
gb|DT511080.1|DT511080 WS02429.BR_I03 PTxD-ICC-N-A-14 Popul... 103 1e-020
gb|CV256227.1|CV256227 WS0243.B21_E14 PTxD-ICC-N-A-14 Popul... 96 4e-018
gb|BU833637.1|BU833637 T050F09 Populus apical shoot cDNA li... 94 1e-017
gb|BU870987.1|BU870987 Q025F05 Populus flower cDNA library ... 92 6e-017
gb|CX172891.1|CX172891 D07_69-73_07.ab1 leaf inoculated wit... 92 6e-017
gb|DT470772.1|DT470772 WS01210.BR_M22 PT-GT-FL-A-3 Populus ... 92 6e-017
gb|DT473198.1|DT473198 WS01228.BR_O04 PT-GT-FL-A-3 Populus ... 92 6e-017
gb|BU831078.1|BU831078 T016H09 Populus apical shoot cDNA li... 90 2e-016
gb|BI120916.1|BI120916 F025P07Y Populus flower cDNA library... 88 9e-016
gb|BI121646.1|BI121646 F043P37Y Populus flower cDNA library... 88 9e-016
gb|CF237076.1|CF237076 PtajxtjxoF4F0412 Poplar cDNA library... 86 3e-015
gb|AI162104.1|AI162104 A012P24U Hybrid aspen plasmid librar... 84 1e-014
gb|BU881112.1|BU881112 UM58TG08 Populus flower cDNA library... 84 1e-014
gb|BU886401.1|BU886401 R045A05 Populus root cDNA library Po... 84 1e-014
gb|AJ777153.1|AJ777153 AJ777153 Populus euphratica root 3-6... 84 1e-014
gb|CV283287.1|CV283287 WS0186.B21_O21 PTxD-IL-N-A-9 Populus... 82 5e-014
gb|CV266058.1|CV266058 WS02028.B21_P24 PTxN-IB-N-A-11 Popul... 76 3e-012
gb|CX659721.1|CX659721 PO01013B11 Poplar SC cDNA library Po... 76 3e-012
gb|CV245071.1|CV245071 WS0256.B21_G13 PT-MB-N-A-15 Populus ... 74 1e-011
gb|CV282917.1|CV282917 WS0185.B21_P04 PTxD-IL-N-A-9 Populus... 74 1e-011
gb|DN500080.1|DN500080 UB14CPE07.5pR Populus active cambium... 74 1e-011
gb|BU817230.1|BU817230 UA14CPE01 Populus tremula cambium cD... 70 2e-010
gb|CV231383.1|CV231383 WS0194.B21_G03 PT-DX-N-A-10 Populus ... 70 2e-010
gb|CK113033.1|CK113033 UR100TH09 Populus root cDNA library ... 64 1e-008
gb|CK088378.1|CK088378 A050P79.3pR Hybrid aspen plasmid lib... 62 5e-008
gb|CV233095.1|CV233095 WS0199.B21_J21 PT-DX-N-A-10 Populus ... 62 5e-008
gb|CV232622.1|CV232622 WS0198.B21_C22 PT-DX-N-A-10 Populus ... 60 2e-007
gb|BU898310.1|BU898310 X078F06 Populus wood cDNA library Po... 58 8e-007
gb|CK092746.1|CK092746 G093P46.3pR Populus tension wood cDN... 54 1e-005
gb|CX182094.1|CX182094 E09_45-67_09.ab1 leaf inoculated wit... 50 2e-004
gb|BI138468.1|BI138468 F107P19Y Populus flower cDNA library... 46 0.003
gb|AJ772236.1|AJ772236 AJ772236 Populus euphratica shoot in... 42 0.047
>gb|DT488868.1|DT488868 WS02537.B21_K16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02537_K16 3', mRNA sequence
Length = 938
Score = 139 bits (70), Expect = 3e-031
Identities = 406/518 (78%)
Strand = Plus / Plus
Query: 353 tgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgga 412
||||||||||| || ||||| || | |||||| ||||||||||| |||||||||| ||
Sbjct: 417 tgagggaatgtagttccaaaataagctccatcaatgttgccttgatacttggatcgaggg 476
Query: 413 tagttaagttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatct 472
|| | | ||||| ||||| ||||| || || || ||||| || || | ||||| |||
Sbjct: 477 taatagatgtcttcacattttggacagtagattttgacagtactagaacgaggaatgtct 536
Query: 473 gattgccctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaag 532
||||| || |||||||||||||||| |||||||| || || | |||||||| ||||||
Sbjct: 537 gattgaccaactggaaggcagggctgtccacagcaataaactcgtgggcatctcccaaag 596
Query: 533 tcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgt 592
|| ||||| ||| |||| ||||||||||||| | |||||||| || | ||||| ||
Sbjct: 597 tcatagtttttgtacttttccaacattgcagacatccccttgctagtaagtatgtaacgc 656
Query: 593 gcatgaattaaaccgtacagcatctctgcagatgactcgattaattcattttgctcctcg 652
||||||| | |||||| ||||||||||| | || || | || ||||| || || |||
Sbjct: 657 acatgaataagaccgtagagcatctctgctgcggattccaccaactcattctgttcttcg 716
Query: 653 gtaaacccgtcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataa 712
|| ||| ||| ||| |||||| |||| || || || ||||||||||||||||||||
Sbjct: 717 gtgaacatatcaccatgagaagattcaacatccaatataagatcaagtgcataatcatag 776
Query: 713 tatggcacctgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcg 772
||||| || ||| | |||| ||||| || |||||||||||||| || || || |||||
Sbjct: 777 tatggaacttgactgctcaatccacaaagattaaaatcatcctgaatgtactcgtcatca 836
Query: 773 atctcacaaaagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcc 832
| ||||| || |||||||| || ||||| | || |||||||| ||||| || || ||
Sbjct: 837 acttcacagaaaaattcatttccacgcaaattgcaaaaccatgagatccaagatgtatca 896
Query: 833 tctccctcggaaccactcacatcagaatcttcactgtc 870
||||| || |||||||| |||||||| || ||||||||
Sbjct: 897 tctccatcagaaccactaacatcagactcctcactgtc 934
Score = 42.1 bits (21), Expect = 0.047
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttgga 295
|||||||| ||||||||||| ||||| ||||||
Sbjct: 327 ggcttgtggagtttgaagccaaaaactcttgga 359
>gb|DT488933.1|DT488933 WS02537.B21_N13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02537_N13 3', mRNA sequence
Length = 933
Score = 131 bits (66), Expect = 7e-029
Identities = 405/518 (78%)
Strand = Plus / Plus
Query: 353 tgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgga 412
||||||||||| || ||||| || | |||||| ||||||||||| |||||||||| ||
Sbjct: 410 tgagggaatgtggttccaaaataagctccatcaatgttgccttgatacttggatcgaggg 469
Query: 413 tagttaagttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatct 472
|| | | ||||| ||||| ||||| || || || ||||| || || | ||||| |||
Sbjct: 470 taatagatgtcttcacattttggacagtagattttgacagtactagaacgaggaatgtct 529
Query: 473 gattgccctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaag 532
||||| || | |||||||||||||| |||||||| || || | |||||||| ||||||
Sbjct: 530 gattgaccaaccggaaggcagggctgtccacagcaataaactcgtgggcatctcccaaag 589
Query: 533 tcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgt 592
|| ||||| ||| |||| ||||||||||||| | |||||||| || | ||||| ||
Sbjct: 590 tcatagtttttgtacttttccaacattgcagacatccccttgctagtaagtatgtaacgc 649
Query: 593 gcatgaattaaaccgtacagcatctctgcagatgactcgattaattcattttgctcctcg 652
||||||| | |||||| ||||||||||| | || || | || ||||| || || |||
Sbjct: 650 acatgaataagaccgtagagcatctctgctgcggattccaccaactcattctgttcttcg 709
Query: 653 gtaaacccgtcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataa 712
|| ||| ||| ||| |||||| |||| || || || ||||||||||||||||||||
Sbjct: 710 gtgaacatatcaccatgagaagattcaacatccaatataagatcaagtgcataatcatag 769
Query: 713 tatggcacctgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcg 772
||||| || ||| | |||| ||||| || |||||||||||||| || || || |||||
Sbjct: 770 tatggaacttgactgctcaatccacaaagattaaaatcatcctgaatgtactcgtcatca 829
Query: 773 atctcacaaaagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcc 832
| ||||| || |||||||| || ||||| | || |||||||| ||||| || || ||
Sbjct: 830 acttcacagaaaaattcatttccacgcaaattgcaaaaccatgagatccaagatgtatca 889
Query: 833 tctccctcggaaccactcacatcagaatcttcactgtc 870
||||| || |||||||| |||||||| || ||||||||
Sbjct: 890 tctccatcagaaccactaacatcagactcctcactgtc 927
Score = 42.1 bits (21), Expect = 0.047
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttgga 295
|||||||| ||||||||||| ||||| ||||||
Sbjct: 320 ggcttgtggagtttgaagccaaaaactcttgga 352
>gb|BU884119.1|BU884119 R006B07 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 760
Score = 125 bits (63), Expect = 4e-027
Identities = 408/523 (78%)
Strand = Plus / Minus
Query: 361 tgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttggatagttaag 420
|||||| ||||| |||| |||||| ||||||||||| |||||||| | ||| |||| |
Sbjct: 760 tgtcgttccaaaatatgctccatcaatgttgccttgatacttggaacgtgggtagtatat 701
Query: 421 ttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatctgattgccc 480
|| || ||| | || || |||| || |||||||| || | ||||| |||||||| ||
Sbjct: 700 atcatcacatctggggcagcatattttaacagtgcttgaccgaggaatgtctgattgacc 641
Query: 481 tgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagtt 540
|||||||||| || || ||||||||||| || || |||||||| |||||||| |||||
Sbjct: 640 aactggaaggcaaggttgtccacagcagtaaactcttgggcatcttccaaagtcatagtt 581
Query: 541 cttgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaat 600
||| ||||||||| ||| || || | || |||||| | || || ||||| ||||||||
Sbjct: 580 tttgtacttctccagcatagctgccatccctttgctgctcaatatatatcgagcatgaat 521
Query: 601 taaaccgtacagcatctctgcagatgactcgattaattcattttgctcctcggtaaaccc 660
|| || || ||||||||||| | || || | |||||||| || ||||| || |||
Sbjct: 520 caatccataaagcatctctgctgcagattcaaccaattcattctgttcctctgtgaacat 461
Query: 661 gtcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcac 720
||| ||| ||| || ||||| || || || | |||||| |||||||| || ||||| ||
Sbjct: 460 atcaccatgagaggattcaatatccaaaatcaaatcaagggcataatcgtagtatggaac 401
Query: 721 ctgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcaca 780
||| | || | ||||| |||||||||||||| ||||| || |||||||| | |||||
Sbjct: 400 ttgactgcttaacccacagaggttaaaatcatcttgtatgtaatcatcatcaacttcaca 341
Query: 781 aaagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctc 840
|||||||||||| |||| | | || ||||||| ||||| ||||| || ||||| ||
Sbjct: 340 aaagaattcattccctcttagattgcaaaaccatgtgatccacgacgtctcatctccatc 281
Query: 841 ggaaccactcacatcagaatcttcactgtcagtttcaaattcc 883
||||||||| |||||||| ||||| ||||| || ||| |||||
Sbjct: 280 ggaaccactaacatcagactcttcgctgtccgtgtcagattcc 238
>gb|DT515781.1|DT515781 WS02429.B21.1_I03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_I03 3', mRNA sequence
Length = 902
Score = 123 bits (62), Expect = 2e-026
Identities = 368/470 (78%)
Strand = Plus / Plus
Query: 353 tgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgga 412
||||||||||| || ||||| || | |||||| ||||||||||| |||||||||| ||
Sbjct: 417 tgagggaatgtggttccaaaataagctccatcaatgttgccttgatacttggatcgaggg 476
Query: 413 tagttaagttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatct 472
|| | | ||||| ||||| ||||| || || || ||||| || || | ||||| |||
Sbjct: 477 taatagatgtcttcacattttggacagtagattttgacagtactagaacgaggaatgtct 536
Query: 473 gattgccctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaag 532
||||| || |||||||||||||||| |||||||| || || | |||||||| ||||||
Sbjct: 537 gattgaccaactggaaggcagggctgtccacagcaataaactcgtgggcatctcccaaag 596
Query: 533 tcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgt 592
|| ||||| ||| |||||||||||||||||| | |||||||| || | ||||| ||
Sbjct: 597 tcatagtttttgtacttctccaacattgcagacatccccttgctagtaagtatgtaacgc 656
Query: 593 gcatgaattaaaccgtacagcatctctgcagatgactcgattaattcattttgctcctcg 652
||||||| | |||||| ||||||||||| | || || | || ||||| || || |||
Sbjct: 657 acatgaataagaccgtagagcatctctgctgcggattccaccaactcattctgttcttcg 716
Query: 653 gtaaacccgtcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataa 712
|| ||| ||| ||| |||||| |||| || || || ||||||||||||||||||||
Sbjct: 717 gtgaacatatcaccatgagaagattcaacatccaatataagatcaagtgcataatcatag 776
Query: 713 tatggcacctgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcg 772
||||| || ||| | |||| ||||| || |||||||||||||| || || || |||||
Sbjct: 777 tatggaacttgactgctcaatccacaaagattaaaatcatcctgaatgtactcgtcatca 836
Query: 773 atctcacaaaagaattcattgcctcgcaatgtacagaaccatgaaatcca 822
| ||||| || |||||||| || ||||| | || |||||||| |||||
Sbjct: 837 acttcacagaaaaattcatttccacgcaaattgcaaaaccatgagatcca 886
Score = 42.1 bits (21), Expect = 0.047
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttgga 295
|||||||| ||||||||||| ||||| ||||||
Sbjct: 327 ggcttgtggagtttgaagccaaaaactcttgga 359
>gb|CV280148.1|CV280148 WS0135.B21_A14 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_A14 3', mRNA sequence
Length = 985
Score = 109 bits (55), Expect = 2e-022
Identities = 160/195 (82%)
Strand = Plus / Plus
Query: 692 agatcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatca 751
|||||||||||||||||||| ||||| || ||| | ||||| ||||| || |||||||||
Sbjct: 723 agatcaagtgcataatcatagtatggaacttgactgctcagtccacaaagattaaaatca 782
Query: 752 tcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaac 811
||||| || || |||||||| | ||||| || |||||||| |||||||| | || |||
Sbjct: 783 tcctgaatgtactcatcatcaacttcacagaaaaattcatttcctcgcaaattgcaaaac 842
Query: 812 catgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtca 871
|| || ||||| || ||||| ||||| || |||||||| ||||| || || ||||||||
Sbjct: 843 cacgagatccaagatgtgtcatctccatcagaaccactaacatctgactcctcactgtct 902
Query: 872 gtttcaaattcctca 886
|| ||| ||||||||
Sbjct: 903 gtctcagattcctca 917
Score = 81.8 bits (41), Expect = 5e-014
Identities = 212/269 (78%)
Strand = Plus / Plus
Query: 353 tgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgga 412
||||| ||||| || ||||| || | |||||| ||||||||||| |||||||||| ||
Sbjct: 384 tgaggaaatgttgttccaaaataagctccatcaatgttgccttgatacttggatcgaggg 443
Query: 413 tagttaagttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatct 472
|| | | ||||| ||||| ||||| || || || ||||| || |||| ||||| |||
Sbjct: 444 taatagatgtcttcacattttggacagtagattttgacagtacttgatcgaggaatgtct 503
Query: 473 gattgccctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaag 532
||||| || |||| | ||||||||| |||||||| || || | |||||||| ||||||
Sbjct: 504 gattgaccaactgggaagcagggctgtccacagcaataaactcgtgggcatctcccaaag 563
Query: 533 tcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgt 592
|| ||||| ||| ||||||||||||| |||| | |||||||| || | ||||| ||
Sbjct: 564 tcatagtttttgtacttctccaacatggcagacatccccttgctagtaagtatgtaacgc 623
Query: 593 gcatgaattaaaccgtacagcatctctgc 621
||||||| | |||||| |||||||||||
Sbjct: 624 acatgaataagaccgtaaagcatctctgc 652
>gb|CX655055.1|CX655055 PO01004C07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01004C07 5', mRNA sequence
Length = 702
Score = 109 bits (55), Expect = 2e-022
Identities = 160/195 (82%)
Strand = Plus / Minus
Query: 692 agatcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatca 751
|||||||| ||||||||||| ||||| || ||| | ||||| ||||| || |||||||||
Sbjct: 367 agatcaagagcataatcatagtatggaacttgactgctcagtccacaaagattaaaatca 308
Query: 752 tcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaac 811
||||| || || |||||||| | ||||| || |||||||| |||||||| | || |||
Sbjct: 307 tcctgaatgtactcatcatcaacttcacagaaaaattcatttcctcgcaaattgcaaaac 248
Query: 812 catgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtca 871
||||| ||||| || ||||| ||||| || |||||||| ||||| || || ||||||||
Sbjct: 247 catgagatccaagatgtgtcatctccatcagaaccactaacatccgactcctcactgtct 188
Query: 872 gtttcaaattcctca 886
|| ||| ||||||||
Sbjct: 187 gtctcagattcctca 173
Score = 85.7 bits (43), Expect = 3e-015
Identities = 193/243 (79%)
Strand = Plus / Minus
Query: 379 tccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttcggaca 438
|||||| ||||||||||| |||||||||| || || | | ||||| ||||| |||||
Sbjct: 680 tccatcaatgttgccttgatacttggatcgagggtaatagatgtcttcacattttggaca 621
Query: 439 atatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcagggctg 498
|| || || ||||| ||||| | ||||| |||||||| || |||| | |||||||||
Sbjct: 620 gtagattttgacagtactcgaacgaggaatgtctgattgaccaactgggaagcagggctg 561
Query: 499 gccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctccaacat 558
|||||||| || || | |||||||| |||||||| ||||| ||| |||||||||||||
Sbjct: 560 tccacagcaataaactcgtgggcatctcccaaagtcatagtttttgtacttctccaacat 501
Query: 559 tgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctc 618
||||| | |||||||| || | ||||| || ||||||| | |||||| ||||||||
Sbjct: 500 tgcagacatccccttgctagtaagtatgtaacgcacatgaataagaccgtaaagcatctc 441
Query: 619 tgc 621
|||
Sbjct: 440 tgc 438
>gb|CX656379.1|CX656379 PO01001B08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01001B08 5', mRNA sequence
Length = 679
Score = 109 bits (55), Expect = 2e-022
Identities = 160/195 (82%)
Strand = Plus / Minus
Query: 692 agatcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatca 751
|||||||| ||||||||||| ||||| || ||| | ||||| ||||| || |||||||||
Sbjct: 362 agatcaagagcataatcatagtatggaacttgactgctcagtccacaaagattaaaatca 303
Query: 752 tcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaac 811
||||| || || |||||||| | ||||| || |||||||| |||||||| | || |||
Sbjct: 302 tcctgaatgtactcatcatcaacttcacagaaaaattcatttcctcgcaaattgcaaaac 243
Query: 812 catgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtca 871
||||| ||||| || ||||| ||||| || |||||||| ||||| || || ||||||||
Sbjct: 242 catgagatccaagatgtgtcatctccatcagaaccactaacatccgactcctcactgtct 183
Query: 872 gtttcaaattcctca 886
|| ||| ||||||||
Sbjct: 182 gtctcagattcctca 168
Score = 77.8 bits (39), Expect = 8e-013
Identities = 192/243 (79%)
Strand = Plus / Minus
Query: 379 tccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttcggaca 438
|||||| ||||||||||| |||||||||| || || | | ||||| ||||| |||||
Sbjct: 675 tccatcaatgttgccttgatacttggatcgagggtaatagatgtcttcacattttggaca 616
Query: 439 atatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcagggctg 498
|| || || ||| | ||||| | ||||| |||||||| || |||| | |||||||||
Sbjct: 615 gtagattttgacaatactcgaacgaggaatgtctgattgaccaactgggaagcagggctg 556
Query: 499 gccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctccaacat 558
|||||||| || || | |||||||| |||||||| ||||| ||| |||||||||||||
Sbjct: 555 tccacagcaataaactcgtgggcatctcccaaagtcatagtttttgtacttctccaacat 496
Query: 559 tgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctc 618
||||| | |||||||| || | ||||| || ||||||| | |||||| ||||||||
Sbjct: 495 tgcagacatccccttgctagtaagtatgtaacgcacatgaataagaccgtaaagcatctc 436
Query: 619 tgc 621
|||
Sbjct: 435 tgc 433
>gb|DT503000.1|DT503000 WS0135.BR_A14 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_A14 5', mRNA sequence
Length = 954
Score = 109 bits (55), Expect = 2e-022
Identities = 160/195 (82%)
Strand = Plus / Minus
Query: 692 agatcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatca 751
|||||||||||||||||||| ||||| || ||| | ||||| ||||| || |||||||||
Sbjct: 748 agatcaagtgcataatcatagtatggaacttgactgctcagtccacaaagattaaaatca 689
Query: 752 tcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaac 811
||||| || || |||||||| | ||||| || |||||||| |||||||| | || |||
Sbjct: 688 tcctgaatgtactcatcatcaacttcacagaaaaattcatttcctcgcaaattgcaaaac 629
Query: 812 catgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtca 871
|| || ||||| || ||||| ||||| || |||||||| ||||| || || ||||||||
Sbjct: 628 cacgagatccaagatgtgtcatctccatcagaaccactaacatctgactcctcactgtct 569
Query: 872 gtttcaaattcctca 886
|| ||| ||||||||
Sbjct: 568 gtctcagattcctca 554
>gb|CK090790.1|CK090790 F025P07.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F025P07 3', mRNA sequence
Length = 746
Score = 105 bits (53), Expect = 4e-021
Identities = 215/269 (79%)
Strand = Plus / Plus
Query: 353 tgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgga 412
||||||||||| || ||||| || | |||||| ||||||||||| |||||||||| ||
Sbjct: 413 tgagggaatgtggttccaaaataagctccatcaatgttgccttgatacttggatcgaggg 472
Query: 413 tagttaagttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatct 472
|| | | ||||| ||||| ||||| || || || ||||| || || | ||||| |||
Sbjct: 473 taatagatgtcttcacattttggacagtagattttgacagtactagaacgaggaatgtct 532
Query: 473 gattgccctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaag 532
||||| || |||||||||||||||| |||||||| || || | |||||||| ||||||
Sbjct: 533 gattgaccaactggaaggcagggctgtccacagcaataaactcgtgggcatctcccaaag 592
Query: 533 tcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgt 592
|| ||||| ||| |||||||||||||||||| | |||||||| || | ||||| ||
Sbjct: 593 tcatagtttttgtacttctccaacattgcagacatccccttgctagtaagtatgtaacgc 652
Query: 593 gcatgaattaaaccgtacagcatctctgc 621
||||||| | |||||| |||||||||||
Sbjct: 653 acatgaataagaccgtagagcatctctgc 681
Score = 42.1 bits (21), Expect = 0.047
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttgga 295
|||||||| ||||||||||| ||||| ||||||
Sbjct: 323 ggcttgtggagtttgaagccaaaaactcttgga 355
>gb|DT511080.1|DT511080 WS02429.BR_I03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_I03 5', mRNA sequence
Length = 888
Score = 103 bits (52), Expect = 1e-020
Identities = 283/360 (78%)
Strand = Plus / Minus
Query: 527 ccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatg 586
|||||||| ||||| ||| |||||||||||||||||| | |||||||| || | |||
Sbjct: 887 ccaaagtcatagtttttgtacttctccaacattgcagacatccccttgctagtaagtatg 828
Query: 587 tatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaattcattttgc 646
|| || ||||||| | |||||| ||||||||||| | || || | || ||||| ||
Sbjct: 827 taacgcacatgaataagaccgtagagcatctctgctgcggattccaccaactcattctgt 768
Query: 647 tcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatcaagtgcataa 706
|| ||||| ||| ||| ||| |||||| |||| || || || |||||||||||||||
Sbjct: 767 tcttcggtgaacatatcaccatgagaagattcaacatccaatataagatcaagtgcataa 708
Query: 707 tcataatatggcacctgattactcagaccacacaggttaaaatcatcctgtatatagtca 766
||||| ||||| || ||| | |||| ||||| || |||||||||||||| || || ||
Sbjct: 707 tcatagtatggaacttgactgctcaatccacaaagattaaaatcatcctgaatgtactcg 648
Query: 767 tcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatgaaatccaggac 826
||||| | ||||| || |||||||| || ||||| | || |||||||| ||||| ||
Sbjct: 647 tcatcaacttcacagaaaaattcatttccacgcaaattgcaaaaccatgagatccaagat 588
Query: 827 gtgtcctctccctcggaaccactcacatcagaatcttcactgtcagtttcaaattcctca 886
|| || ||||| || |||||||| |||||||| || |||||||| || ||| ||||||||
Sbjct: 587 gtatcatctccatcagaaccactaacatcagactcctcactgtctgtctcagattcctca 528
>gb|CV256227.1|CV256227 WS0243.B21_E14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0243_E14 3', mRNA sequence
Length = 902
Score = 95.6 bits (48), Expect = 4e-018
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 692 agatcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatca 751
|||||||||||||||||||| ||||| || ||| | ||||| ||||| || |||||||||
Sbjct: 733 agatcaagtgcataatcatagtatggaacttgactgctcagtccacaaagattaaaatca 792
Query: 752 tcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaac 811
||||| || || |||||||| | ||||| || |||||||| |||||||| | || |||
Sbjct: 793 tcctgaatgtactcatcatcaacttcacagaaaaattcatttcctcgcaaattgcaaaac 852
Query: 812 catgaaatccaggacgtgtcctctccctcggaaccactcacatc 855
|| || ||||| || ||||| ||||| || |||||||| |||||
Sbjct: 853 cacgagatccaagatgtgtcatctccatcagaaccactaacatc 896
Score = 73.8 bits (37), Expect = 1e-011
Identities = 211/269 (78%)
Strand = Plus / Plus
Query: 353 tgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgga 412
||||| ||||| || ||||| || | |||||| ||||||||||| |||||||||| ||
Sbjct: 394 tgaggaaatgttgttccaaaataagctccatcaatgttgccttgatacttggatcgaggg 453
Query: 413 tagttaagttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatct 472
|| | | ||||| ||||| ||||| || || || ||||| || || | ||||| |||
Sbjct: 454 taatagatgtcttcacattttggacagtagattttgacagtacttgaacgaggaatgtct 513
Query: 473 gattgccctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaag 532
||||| || |||| | ||||||||| |||||||| || || | |||||||| ||||||
Sbjct: 514 gattgaccaactgggaagcagggctgtccacagcaataaactcgtgggcatctcccaaag 573
Query: 533 tcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgt 592
|| ||||| ||| ||||||||||||| |||| | |||||||| || | ||||| ||
Sbjct: 574 tcatagtttttgtacttctccaacatggcagacatccccttgctagtaagtatgtaacgc 633
Query: 593 gcatgaattaaaccgtacagcatctctgc 621
||||||| | |||||| |||||||||||
Sbjct: 634 acatgaataagaccgtaaagcatctctgc 662
>gb|BU833637.1|BU833637 T050F09 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 718
Score = 93.7 bits (47), Expect = 1e-017
Identities = 158/195 (81%)
Strand = Plus / Minus
Query: 692 agatcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatca 751
|||||||||||||||||||| ||||| || ||| | |||| ||||| || |||||||||
Sbjct: 609 agatcaagtgcataatcatagtatggaacttgactgctcaatccacaaagattaaaatca 550
Query: 752 tcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaac 811
||||| || || || ||||| | ||||| || |||||||| || ||||| | || |||
Sbjct: 549 tcctgaatgtactcgtcatcaacttcacagaaaaattcatttccacgcaaattgcaaaac 490
Query: 812 catgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtca 871
||||| ||||| || || || ||||| || |||||||| |||||||| || ||||||||
Sbjct: 489 catgagatccaagatgtatcatctccatcagaaccactaacatcagactcctcactgtct 430
Query: 872 gtttcaaattcctca 886
|| ||| ||||||||
Sbjct: 429 gtctcagattcctca 415
>gb|BU870987.1|BU870987 Q025F05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 558
Score = 91.7 bits (46), Expect = 6e-017
Identities = 124/150 (82%)
Strand = Plus / Minus
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattg 793
||||| |||||||||||||| ||||| || |||||||| | |||||||||||||||||
Sbjct: 356 ccacagaggttaaaatcatcttgtatgtaatcatcatcaacttcacaaaagaattcattc 297
Query: 794 cctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcaca 853
|||| | | || |||||||| ||||| ||||| || ||||| ||||||||||| |||
Sbjct: 296 cctcttagattgcaaaaccatgagatccacgacgtctcatctccatcggaaccactaaca 237
Query: 854 tcagaatcttcactgtcagtttcaaattcc 883
||||| ||||| ||||| || ||| |||||
Sbjct: 236 tcagactcttcgctgtccgtgtcagattcc 207
>gb|CX172891.1|CX172891 D07_69-73_07.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 705
Score = 91.7 bits (46), Expect = 6e-017
Identities = 124/150 (82%)
Strand = Plus / Minus
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattg 793
||||| |||||||| ||||| ||||| || |||||||| | |||||||||||||||||
Sbjct: 555 ccacagaggttaaagtcatcttgtatgtaatcatcatccacttcacaaaagaattcattt 496
Query: 794 cctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcaca 853
|||| | ||||||||||||| ||||| | ||| || ||||| || || |||||||||
Sbjct: 495 cctcttagattacagaaccatgatatccacgtcgtctcatctccttctgacccactcaca 436
Query: 854 tcagaatcttcactgtcagtttcaaattcc 883
|| || ||||||||||| |||||| |||||
Sbjct: 435 tcggactcttcactgtccgtttcagattcc 406
>gb|DT470772.1|DT470772 WS01210.BR_M22 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01210_M22 5', mRNA sequence
Length = 682
Score = 91.7 bits (46), Expect = 6e-017
Identities = 124/150 (82%)
Strand = Plus / Minus
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattg 793
||||| |||||||| ||||| ||||| || |||||||| | |||||||||||||||||
Sbjct: 542 ccacagaggttaaagtcatcttgtatgtaatcatcatccacttcacaaaagaattcattt 483
Query: 794 cctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcaca 853
|||| | ||||||||||||| ||||| | ||| || ||||| || || |||||||||
Sbjct: 482 cctcttagattacagaaccatgagatccacgtcgtctcatctccttctgacccactcaca 423
Query: 854 tcagaatcttcactgtcagtttcaaattcc 883
|| || ||||||||||| |||||| |||||
Sbjct: 422 tcggactcttcactgtccgtttcagattcc 393
>gb|DT473198.1|DT473198 WS01228.BR_O04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_O04 5', mRNA sequence
Length = 855
Score = 91.7 bits (46), Expect = 6e-017
Identities = 124/150 (82%)
Strand = Plus / Minus
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattg 793
||||| |||||||| ||||| ||||| || |||||||| | |||||||||||||||||
Sbjct: 541 ccacagaggttaaagtcatcttgtatgtaatcatcatccacttcacaaaagaattcattt 482
Query: 794 cctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcaca 853
|||| | ||||||||||||| ||||| | ||| || ||||| || || |||||||||
Sbjct: 481 cctcttagattacagaaccatgagatccacgtcgtctcatctccttctgacccactcaca 422
Query: 854 tcagaatcttcactgtcagtttcaaattcc 883
|| || ||||||||||| |||||| |||||
Sbjct: 421 tcggactcttcactgtccgtttcagattcc 392
Score = 73.8 bits (37), Expect = 1e-011
Identities = 112/137 (81%)
Strand = Plus / Minus
Query: 485 ggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttg 544
|||||||| || || |||||||||| || || |||||||| |||||||| |||||||||
Sbjct: 775 ggaaggcaaggttgtccacagcagtgaactcttgggcatctcccaaagtcatagttcttg 716
Query: 545 aacttctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaa 604
|||| |||| ||| || || | ||||||||||| || |||||||| |||||||| |
Sbjct: 715 tacttgtccagcatagctgccatccccttgctggtcaatatgtatcgagcatgaatcagt 656
Query: 605 ccgtacagcatctctgc 621
|| || |||||||||||
Sbjct: 655 ccataaagcatctctgc 639
>gb|BU831078.1|BU831078 T016H09 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 505
Score = 89.7 bits (45), Expect = 2e-016
Identities = 213/269 (79%)
Strand = Plus / Minus
Query: 353 tgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgga 412
||||| ||||| || ||||| || | |||||| ||||||||||| |||||||||| ||
Sbjct: 358 tgaggaaatgttgttccaaaataagctccatcaatgttgccttgatacttggatcgaggg 299
Query: 413 tagttaagttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatct 472
|| | | ||||| ||||| ||||| || || || ||||| ||||| | ||||| |||
Sbjct: 298 taatagatgtcttcacattttggacagtagattttgacagtactcgaacgaggaatgtct 239
Query: 473 gattgccctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaag 532
||||| || |||| | ||||||||| |||||||| || || | |||||||| ||||||
Sbjct: 238 gattgaccaactgggaagcagggctgtccacagcaataaactcgtgggcatctcccaaag 179
Query: 533 tcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgt 592
|| ||||| ||| |||||||||||||||||| | |||||||| || | ||||| ||
Sbjct: 178 tcatagtttttgtacttctccaacattgcagacatccccttgctagtaagtatgtaacgc 119
Query: 593 gcatgaattaaaccgtacagcatctctgc 621
||||||| | |||||| |||||||||||
Sbjct: 118 acatgaataagaccgtaaagcatctctgc 90
>gb|BI120916.1|BI120916 F025P07Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 320
Score = 87.7 bits (44), Expect = 9e-016
Identities = 195/244 (79%), Gaps = 1/244 (0%)
Strand = Plus / Minus
Query: 379 tccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttcggaca 438
|||||| ||||||||||| |||||||||| || || | | ||||| ||||| |||||
Sbjct: 309 tccatcaatgttgccttgatacttggatcgagggtaatagatgtcttcacattttggaca 250
Query: 439 atatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcagggctg 498
|| || || ||||| || || | ||||| |||||||| || ||||||||||||||||
Sbjct: 249 gtagattttgacagtactagaacgaggaatgtctgattgaccaactggaaggcagggctg 190
Query: 499 gccacagcagtacaccctg-gggcatctaccaaagtcgtagttcttgaacttctccaaca 557
|||||||| || || | | |||||||| |||||||| ||||| ||| ||||||||||||
Sbjct: 189 tccacagcaataaactcggtgggcatctcccaaagtcatagtttttgtacttctccaaca 130
Query: 558 ttgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatct 617
|||||| | |||||||| || | ||||| || ||||||| | |||||| |||||||
Sbjct: 129 ttgcagacatccccttgctagtaagtatgtaacgcacatgaataagaccgtagagcatct 70
Query: 618 ctgc 621
||||
Sbjct: 69 ctgc 66
>gb|BI121646.1|BI121646 F043P37Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 288
Score = 87.7 bits (44), Expect = 9e-016
Identities = 125/152 (82%)
Strand = Plus / Minus
Query: 470 tctgattgccctgctggaaggcagggctggccacagcagtacaccctggggcatctacca 529
|||||||| || |||||||||||||||| |||||||| || || | |||||||| |||
Sbjct: 217 tctgattgaccaactggaaggcagggctgtccacagcaataaactcgtgggcatctccca 158
Query: 530 aagtcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatgtat 589
||||| ||||| ||| |||||||||||||||||| | |||||||| || | |||||
Sbjct: 157 aagtcatagtttttgtacttctccaacattgcagacatccccttgctagtaagtatgtaa 98
Query: 590 cgtgcatgaattaaaccgtacagcatctctgc 621
|| ||||||| | |||||| |||||||||||
Sbjct: 97 cgcacatgaataagaccgtagagcatctctgc 66
>gb|CF237076.1|CF237076 PtajxtjxoF4F0412 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 607
Score = 85.7 bits (43), Expect = 3e-015
Identities = 156/195 (80%)
Strand = Plus / Minus
Query: 692 agatcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatca 751
|||||||| ||||||||||| ||||| || ||| | ||||| || || || |||||||||
Sbjct: 572 agatcaagagcataatcatagtatggaacttgactgctcagtccncaaagattaaaatca 513
Query: 752 tcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaac 811
||||| || || |||||||| | ||||| || |||||||| |||||||| | || |||
Sbjct: 512 tcctgaatgtactcatcatcaacttcacagaaaaattcatttcctcgcaaattgcaaaac 453
Query: 812 catgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtca 871
||||| ||||| || ||||| | ||| || || ||| | ||||| || || ||||||||
Sbjct: 452 catgagatccaagatgtgtcatntccatcaganccantaacatccgactcctcactgtct 393
Query: 872 gtttcaaattcctca 886
|| ||| ||||||||
Sbjct: 392 gtctcagattcctca 378
>gb|AI162104.1|AI162104 A012P24U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 608
Score = 83.8 bits (42), Expect = 1e-014
Identities = 123/150 (82%)
Strand = Plus / Minus
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattg 793
||||| |||||||||||||| |||| || |||||||| | |||||||||||||||||
Sbjct: 385 ccacagaggttaaaatcatcttgtaggtaatcatcatcaacttcacaaaagaattcattc 326
Query: 794 cctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcaca 853
|||| | | || |||||||| ||||| ||||| || ||||| ||||||||||| |||
Sbjct: 325 cctcttagattgcaaaaccatgagatccatgacgtctcatctccatcggaaccactaaca 266
Query: 854 tcagaatcttcactgtcagtttcaaattcc 883
||||| ||||| ||||| || ||| |||||
Sbjct: 265 tcagactcttcgctgtccgtgtcagattcc 236
>gb|BU881112.1|BU881112 UM58TG08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 608
Score = 83.8 bits (42), Expect = 1e-014
Identities = 123/150 (82%)
Strand = Plus / Minus
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattg 793
||||| |||||||||||||| ||||| || |||||||| | ||||||||||||||||
Sbjct: 423 ccacagaggttaaaatcatcttgtatgtaatcatcatcaactccacaaaagaattcattc 364
Query: 794 cctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcaca 853
|||| | | || |||||||| ||||| ||||| || ||||| ||||||||||| |||
Sbjct: 363 cctcttagactgcaaaaccatgagatccacgacgtctcatctccatcggaaccactaaca 304
Query: 854 tcagaatcttcactgtcagtttcaaattcc 883
||||| ||||| ||||| || ||| |||||
Sbjct: 303 tcagactcttcgctgtccgtgtcagattcc 274
>gb|BU886401.1|BU886401 R045A05 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 554
Score = 83.8 bits (42), Expect = 1e-014
Identities = 123/150 (82%)
Strand = Plus / Minus
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattg 793
||||| |||||||||||||| ||||| || |||||||| | |||||||||||||||||
Sbjct: 396 ccacagaggttaaaatcatcttgtatgtaatcatcatcaacttcacaaaagaattcattc 337
Query: 794 cctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcaca 853
|||| | | || ||||||| ||||| ||||| || ||||| ||||||||||| |||
Sbjct: 336 cctcttagattgcaaaaccatgtgatccacgacgtctcatctccatcggaaccactaaca 277
Query: 854 tcagaatcttcactgtcagtttcaaattcc 883
||||| ||||| ||||| || ||| |||||
Sbjct: 276 tcagactcttcgctgtccgtgtcagattcc 247
>gb|AJ777153.1|AJ777153 AJ777153 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400023H02F1, mRNA sequence
Length = 636
Score = 83.8 bits (42), Expect = 1e-014
Identities = 123/150 (82%)
Strand = Plus / Minus
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattg 793
||||| |||||||| ||||| |||| || |||||||| | |||||||||||||||||
Sbjct: 163 ccacagaggttaaagtcatcttgtacgtaatcatcatccacttcacaaaagaattcattt 104
Query: 794 cctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcaca 853
|||| | ||||||||||||| ||||| | ||| || ||||| || || |||||||||
Sbjct: 103 cctcttagattacagaaccatgagatccacgtcgtctcatctccttctgacccactcaca 44
Query: 854 tcagaatcttcactgtcagtttcaaattcc 883
|| || ||||||||||| |||||| |||||
Sbjct: 43 tcggactcttcactgtccgtttcagattcc 14
Score = 77.8 bits (39), Expect = 8e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgcct 394
|||||||| | ||| || ||||| |||||||||||||| |||| ||||||||||||||||
Sbjct: 547 taagtcattaagaacaggtgaggaaatgtcgtcccaaaatatgctccatcgatgttgcct 488
Query: 395 tggtacttgga 405
|| ||||||||
Sbjct: 487 tgatacttgga 477
Score = 73.8 bits (37), Expect = 1e-011
Identities = 112/137 (81%)
Strand = Plus / Minus
Query: 485 ggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttg 544
|||||||| || || |||||||||| || || |||||||| |||||||| |||||||||
Sbjct: 397 ggaaggcaaggttgtccacagcagtgaactcttgggcatctcccaaagtcatagttcttg 338
Query: 545 aacttctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaa 604
|||| |||| ||| || || | ||||||||||| || |||||||| |||||||| |
Sbjct: 337 tacttgtccagcatagctgccatccccttgctggtcaatatgtatcgagcatgaatcagt 278
Query: 605 ccgtacagcatctctgc 621
|| || |||||||||||
Sbjct: 277 ccataaagcatctctgc 261
>gb|CV283287.1|CV283287 WS0186.B21_O21 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0186_O21 3', mRNA sequence
Length = 868
Score = 81.8 bits (41), Expect = 5e-014
Identities = 212/269 (78%)
Strand = Plus / Plus
Query: 353 tgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgga 412
||||| ||||| || ||||| || | |||||| ||||||||||| |||||||||| ||
Sbjct: 451 tgaggaaatgttgttccaaaataagctccatcaatgttgccttgatacttggatcgaggg 510
Query: 413 tagttaagttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatct 472
|| | | ||||| ||||| ||||| || || || ||||| || |||| ||||| |||
Sbjct: 511 taatagatgtcttcacattttggacagtagattttgacagtacttgatcgaggaatgtct 570
Query: 473 gattgccctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaag 532
||||| || |||| | ||||||||| |||||||| || || | |||||||| ||||||
Sbjct: 571 gattgaccaactgggaagcagggctgtccacagcaataaactcgtgggcatctcccaaag 630
Query: 533 tcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgt 592
|| ||||| ||| ||||||||||||| |||| | |||||||| || | ||||| ||
Sbjct: 631 tcatagtttttgtacttctccaacatggcagacatccccttgctagtaagtatgtaacgc 690
Query: 593 gcatgaattaaaccgtacagcatctctgc 621
||||||| | |||||| |||||||||||
Sbjct: 691 acatgaataagaccgtaaagcatctctgc 719
Score = 69.9 bits (35), Expect = 2e-010
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 692 agatcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatca 751
|||||||||||||||||||| ||||| || ||| | ||||| ||||| || |||||||||
Sbjct: 790 agatcaagtgcataatcatagtatggaacttgactgctcagtccacaaagattaaaatca 849
Query: 752 tcctgtatatagtcatcat 770
||||| || || |||||||
Sbjct: 850 tcctgaatgtactcatcat 868
>gb|CV266058.1|CV266058 WS02028.B21_P24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02028_P24 3', mRNA sequence
Length = 760
Score = 75.8 bits (38), Expect = 3e-012
Identities = 161/202 (79%)
Strand = Plus / Plus
Query: 353 tgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgga 412
||||| |||||||| ||||| || | |||||| ||||||||||| |||||||| | |||
Sbjct: 537 tgaggaaatgtcgttccaaaataagctccatcaatgttgccttgatacttggaacgtggg 596
Query: 413 tagttaagttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatct 472
|||| | || || ||| | || || |||| || |||||||| || | ||||| |||
Sbjct: 597 tagtatatatcatcacatctggggcagcatattttaacagtgcttgaccgaggaatgtct 656
Query: 473 gattgccctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaag 532
||||| || |||||||||| || || ||||||||| | || ||||||||||| ||||||
Sbjct: 657 gattgaccaactggaaggcaaggttgtccacagcagcaaactctggggcatcttccaaag 716
Query: 533 tcgtagttcttgaacttctcca 554
|| ||||| ||| |||||||||
Sbjct: 717 tcatagtttttgtacttctcca 738
>gb|CX659721.1|CX659721 PO01013B11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01013B11 5', mRNA sequence
Length = 348
Score = 75.8 bits (38), Expect = 3e-012
Identities = 110/134 (82%)
Strand = Plus / Minus
Query: 488 aggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaac 547
||||||||||| |||||||| || || | |||||||| |||||||| ||||| ||| ||
Sbjct: 348 aggcagggctgtccacagcaataaactcgtgggcatctcccaaagtcatagtttttgtac 289
Query: 548 ttctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccg 607
|||||||||||||||| | |||||||| || | ||||| || ||||||| | ||||
Sbjct: 288 ttctccaacattgcagacatccccttgctagtaagtatgtaacgcacatgaataagaccg 229
Query: 608 tacagcatctctgc 621
|| |||||||||||
Sbjct: 228 tagagcatctctgc 215
Score = 61.9 bits (31), Expect = 5e-008
Identities = 106/131 (80%)
Strand = Plus / Minus
Query: 692 agatcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatca 751
|||||||||||||||||||| ||||| || ||| | |||| ||||| || |||||||||
Sbjct: 144 agatcaagtgcataatcatagtatggaacttgactgctcaatccacaaagattaaaatca 85
Query: 752 tcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaac 811
||||| || || || ||||| | ||||| || |||||||| || ||||| | || |||
Sbjct: 84 tcctgaatgtactcgtcatcaacttcacagaaaaattcatttccacgcaaattgcaaaac 25
Query: 812 catgaaatcca 822
||||| |||||
Sbjct: 24 catgagatcca 14
>gb|CV245071.1|CV245071 WS0256.B21_G13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0256_G13 3', mRNA sequence
Length = 855
Score = 73.8 bits (37), Expect = 1e-011
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 692 agatcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatca 751
|||||||||||||||||||| ||||| || ||| | ||||| ||||| || |||||||||
Sbjct: 751 agatcaagtgcataatcatagtatggaacttgactgctcagtccacaaagattaaaatca 810
Query: 752 tcctgtatatagtcatcatcgatctcacaaaagaattcatt 792
||||| || || |||||||| | ||||| || ||||||||
Sbjct: 811 tcctgaatgtactcatcatcaacttcacagaaaaattcatt 851
Score = 73.8 bits (37), Expect = 1e-011
Identities = 211/269 (78%)
Strand = Plus / Plus
Query: 353 tgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgga 412
||||| ||||| || ||||| || | |||||| ||||||||||| |||||||||| ||
Sbjct: 412 tgaggaaatgttgttccaaaataagctccatcaatgttgccttgatacttggatcgaggg 471
Query: 413 tagttaagttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatct 472
|| | | ||||| ||||| ||||| || || || ||||| || || | ||||| |||
Sbjct: 472 taatagatgtcttcacattttggacagtagattttgacagtacttgaacgaggaatgtct 531
Query: 473 gattgccctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaag 532
||||| || |||| | ||||||||| |||||||| || || | |||||||| ||||||
Sbjct: 532 gattgaccaactgggaagcagggctgtccacagcaataaactcgtgggcatctcccaaag 591
Query: 533 tcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgt 592
|| ||||| ||| ||||||||||||| |||| | |||||||| || | ||||| ||
Sbjct: 592 tcatagtttttgtacttctccaacatggcagacatccccttgctagtaagtatgtaacgc 651
Query: 593 gcatgaattaaaccgtacagcatctctgc 621
||||||| | |||||| |||||||||||
Sbjct: 652 acatgaataagaccgtaaagcatctctgc 680
>gb|CV282917.1|CV282917 WS0185.B21_P04 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0185_P04 3', mRNA sequence
Length = 721
Score = 73.8 bits (37), Expect = 1e-011
Identities = 112/137 (81%)
Strand = Plus / Plus
Query: 485 ggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttg 544
|||||||| || || |||||||||| || || |||||||| |||||||| |||||||||
Sbjct: 485 ggaaggcaaggttgtccacagcagtgaactcttgggcatctcccaaagtcatagttcttg 544
Query: 545 aacttctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaa 604
|||| |||| ||| || || | ||||||||||| || |||||||| |||||||| |
Sbjct: 545 tacttgtccagcatagctgccatccccttgctggtcaatatgtatcgagcatgaatcagt 604
Query: 605 ccgtacagcatctctgc 621
|| || |||||||||||
Sbjct: 605 ccataaagcatctctgc 621
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgcct 394
|||||||| | ||| || ||||| |||||||||||||| |||| |||||| |||||||||
Sbjct: 335 taagtcattaagaacaggtgaggaaatgtcgtcccaaaatatgctccatcaatgttgcct 394
Query: 395 tggtacttgga 405
|| ||||||||
Sbjct: 395 tgatacttgga 405
>gb|DN500080.1|DN500080 UB14CPE07.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB14CPE07 5', mRNA sequence
Length = 772
Score = 73.8 bits (37), Expect = 1e-011
Identities = 112/137 (81%)
Strand = Plus / Minus
Query: 485 ggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttg 544
|||||||| || || |||||||||| || || |||||||| |||||||| |||||||||
Sbjct: 312 ggaaggcaaggttgtccacagcagtgaactcttgggcatctcccaaagtcatagttcttg 253
Query: 545 aacttctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaa 604
|||| |||| ||| || || | ||||||||||| || |||||||| |||||||| |
Sbjct: 252 tacttgtccagcatagctgccatccccttgctggtcaatatgtatcgagcatgaatcagt 193
Query: 605 ccgtacagcatctctgc 621
|| || |||||||||||
Sbjct: 192 ccataaagcatctctgc 176
Score = 61.9 bits (31), Expect = 5e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgcct 394
|||||||| | ||| || ||||| || ||||||||||| |||| |||||| |||||||||
Sbjct: 462 taagtcattaagaacaggtgaggaaacgtcgtcccaaaatatgctccatcaatgttgcct 403
Query: 395 tggtacttgga 405
|| ||||||||
Sbjct: 402 tgatacttgga 392
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 740 aggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcatt 792
|||||||| ||||| ||||| || |||||||| | |||||||||||||||||
Sbjct: 72 aggttaaagtcatcttgtatgtaatcatcatccacttcacaaaagaattcatt 20
>gb|BU817230.1|BU817230 UA14CPE01 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 401
Score = 69.9 bits (35), Expect = 2e-010
Identities = 110/135 (81%)
Strand = Plus / Minus
Query: 749 tcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacag 808
||||| ||||| || |||||||| | ||||||||||||||||| |||| | | ||
Sbjct: 401 tcatcttgtatgtaatcatcatcaacttcacaaaagaattcattccctcttagattgcaa 342
Query: 809 aaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactg 868
|||||||| ||||| ||||| || ||||| ||||||||||| |||||||| ||||| |||
Sbjct: 341 aaccatgagatccacgacgtctcatctccatcggaaccactaacatcagactcttcgctg 282
Query: 869 tcagtttcaaattcc 883
|| || ||| |||||
Sbjct: 281 tccgtgtcagattcc 267
>gb|CV231383.1|CV231383 WS0194.B21_G03 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0194_G03 3', mRNA sequence
Length = 591
Score = 69.9 bits (35), Expect = 2e-010
Identities = 167/211 (79%)
Strand = Plus / Plus
Query: 353 tgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgga 412
||||| ||||| || ||||| || | |||||| ||||||||||| |||||||||| ||
Sbjct: 361 tgaggaaatgttgttccaaaataagctccatcaatgttgccttgatacttggatcgaggg 420
Query: 413 tagttaagttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatct 472
|| | | ||||| ||||| ||||| || || || ||||| || || | ||||| |||
Sbjct: 421 taatagatgtcttcacattttggacagtagattttgacagtacttgaacgaggaatgtct 480
Query: 473 gattgccctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaag 532
||||| || |||| | ||||||||| |||||||| || || | |||||||| ||||||
Sbjct: 481 gattgaccaactgggaagcagggctgtccacagcaataaactcgtgggcatctcccaaag 540
Query: 533 tcgtagttcttgaacttctccaacattgcag 563
|| ||||| ||| ||||||||||||| ||||
Sbjct: 541 tcatagtttttgtacttctccaacatggcag 571
>gb|CK113033.1|CK113033 UR100TH09 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone UR100TH09 5', mRNA sequence
Length = 464
Score = 63.9 bits (32), Expect = 1e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 804 tacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatctt 863
||||||||||||| ||||| | ||| || ||||| || || ||||||||||| || ||||
Sbjct: 362 tacagaaccatgagatccacgtcgtctcatctccttctgacccactcacatcggactctt 303
Query: 864 cactgtcagtttcaaattcc 883
||||||| |||||| |||||
Sbjct: 302 cactgtccgtttcagattcc 283
>gb|CK088378.1|CK088378 A050P79.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A050P79 3', mRNA sequence
Length = 646
Score = 61.9 bits (31), Expect = 5e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgcct 394
|||||||| | ||| || ||||| || ||||||||||| |||| |||||| |||||||||
Sbjct: 513 taagtcattaagaacaggtgaggaaacgtcgtcccaaaatatgctccatcaatgttgcct 572
Query: 395 tggtacttgga 405
|| ||||||||
Sbjct: 573 tgatacttgga 583
>gb|CV233095.1|CV233095 WS0199.B21_J21 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0199_J21 3', mRNA sequence
Length = 581
Score = 61.9 bits (31), Expect = 5e-008
Identities = 124/155 (80%)
Strand = Plus / Plus
Query: 353 tgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgga 412
||||||||||| || ||||| || | |||||| ||||||||||| |||||||||| ||
Sbjct: 422 tgagggaatgtggttccaaaataagctccatcaatgttgccttgatacttggatcgaggg 481
Query: 413 tagttaagttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatct 472
|| | | ||||| ||||| ||||| || || || ||||| || || | ||||| |||
Sbjct: 482 taatagatgtcttcacattttggacagtagattttgacagtactagaacgaggaatgtct 541
Query: 473 gattgccctgctggaaggcagggctggccacagca 507
||||| || |||||||||||||||| ||||||||
Sbjct: 542 gattgaccaactggaaggcagggctgtccacagca 576
Score = 42.1 bits (21), Expect = 0.047
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttgga 295
|||||||| ||||||||||| ||||| ||||||
Sbjct: 332 ggcttgtggagtttgaagccaaaaactcttgga 364
>gb|CV232622.1|CV232622 WS0198.B21_C22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0198_C22 3', mRNA sequence
Length = 588
Score = 60.0 bits (30), Expect = 2e-007
Identities = 159/202 (78%)
Strand = Plus / Plus
Query: 353 tgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgga 412
||||| ||||| || ||||| || | |||||| ||||||||||| |||||||||| ||
Sbjct: 386 tgaggaaatgttgttccaaaataagctccatcaatgttgccttgatacttggatcgaggg 445
Query: 413 tagttaagttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatct 472
|| | | ||||| ||||| ||||| || || || ||||| || || | ||||| |||
Sbjct: 446 taatagatgtcttcacattttggacagtagattttgacagtacttgaacgaggaatgtct 505
Query: 473 gattgccctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaag 532
||||| || |||| | ||||||||| |||||||| || || | |||||||| ||||||
Sbjct: 506 gattgaccaactgggaagcagggctgtccacagcaataaactcgtgggcatctcccaaag 565
Query: 533 tcgtagttcttgaacttctcca 554
|| ||||| ||| |||||||||
Sbjct: 566 tcatagtttttgtacttctcca 587
>gb|BU898310.1|BU898310 X078F06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 609
Score = 58.0 bits (29), Expect = 8e-007
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 809 aaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactg 868
|||||||| ||||| || || || ||||| || |||||||| |||||||| || ||||||
Sbjct: 591 aaccatgagatccaagatgtatcatctccatcagaaccactaacatcagactcctcactg 532
Query: 869 tcagtttcaaattcctcacca 889
|| || ||| |||||||||||
Sbjct: 531 tctgtctcagattcctcacca 511
>gb|CK092746.1|CK092746 G093P46.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G093P46 3', mRNA sequence
Length = 700
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 353 tgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatc 407
||||||||||| || ||||| || | |||||| ||||||||||| ||||||||||
Sbjct: 450 tgagggaatgtggttccaaaataagctccatcaatgttgccttgatacttggatc 504
Score = 42.1 bits (21), Expect = 0.047
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttgga 295
|||||||| ||||||||||| ||||| ||||||
Sbjct: 360 ggcttgtggagtttgaagccaaaaactcttgga 392
>gb|CX182094.1|CX182094 E09_45-67_09.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 648
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 353 tgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttgga 405
||||| |||||||| ||||| || | |||||| ||||||||||| ||||||||
Sbjct: 516 tgaggaaatgtcgttccaaaataagctccatcaatgttgccttgatacttgga 568
>gb|BI138468.1|BI138468 F107P19Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 428
Score = 46.1 bits (23), Expect = 0.003
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 353 tgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatc 407
||||| ||||| || ||||| || | |||||| ||||||||||| ||||||||||
Sbjct: 136 tgaggaaatgttgttccaaaataagctccatcaatgttgccttgatacttggatc 82
>gb|AJ772236.1|AJ772236 AJ772236 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700003C11F1, mRNA sequence
Length = 235
Score = 42.1 bits (21), Expect = 0.047
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 569 cccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgc 621
||||||||||| || |||||||| |||||||| | || || |||||||||||
Sbjct: 72 cccttgctggtcaatatgtatcgagcatgaatcagtccataaagcatctctgc 124
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 108,113
Number of Sequences: 369679
Number of extensions: 108113
Number of successful extensions: 29724
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29591
Number of HSP's gapped (non-prelim): 112
length of query: 1153
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1134
effective length of database: 196,384,763
effective search space: 222700321242
effective search space used: 222700321242
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)