BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131572.2.3
(1521 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 50 3e-004
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloide... 46 0.004
gb|AC149295.1| Populus trichocarpa clone Pop1-008L01, compl... 46 0.004
gb|AC149297.1| Populus trichocarpa clone Pop1-015H07, compl... 46 0.004
gb|AC149424.1| Populus trichocarpa clone Pop1-011N15, compl... 46 0.004
gb|AF133675.1|AF133675 Populus tremula x Populus tremuloide... 44 0.016
gb|AC149545.1| Populus trichocarpa clone Pop1-71J23, comple... 42 0.062
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 40 0.24
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 40 0.24
gb|CV281627.1|CV281627 WS0182.B21_G23 PTxD-IL-N-A-9 Populus... 40 0.24
gb|DN491216.1|DN491216 UM74TE02.3pR Populus female catkins ... 40 0.24
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 479 gtacctgcccgggcggccgctcgaa 503
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein TIR1
(TIR1) mRNA, complete cds
Length = 2646
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1498 tacctgcccgggcggccgctcga 1520
|||||||||||||||||||||||
Sbjct: 65 tacctgcccgggcggccgctcga 43
>gb|AC149295.1| Populus trichocarpa clone Pop1-008L01, complete sequence
Length = 101981
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 97785 atatatgtatgtatatatatatgtata 97811
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 303 catacatatatgtatgtaaatatatatgtata 334
|||| ||||||||||||| |||| ||||||||
Sbjct: 97750 catatatatatgtatgtatatatgtatgtata 97781
>gb|AC149297.1| Populus trichocarpa clone Pop1-015H07, complete sequence
Length = 131790
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 31403 atatatgtatgtatatatatatgtata 31429
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 303 catacatatatgtatgtaaatatatatgtata 334
|||| ||||||||||||| |||| ||||||||
Sbjct: 31368 catatatatatgtatgtatatatgtatgtata 31399
>gb|AC149424.1| Populus trichocarpa clone Pop1-011N15, complete sequence
Length = 152544
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 147000 atatatgtatgtatatatatatgtata 147026
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 303 catacatatatgtatgtaaatatatatgtata 334
|||| ||||||||||||| |||| ||||||||
Sbjct: 146965 catatatatatgtatgtatatatgtatgtata 146996
>gb|AF133675.1|AF133675 Populus tremula x Populus tremuloides retinoblastoma-related protein
1 (RB1) mRNA, complete cds
Length = 3572
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1499 acctgcccgggcggccgctcga 1520
||||||||||||||||||||||
Sbjct: 38 acctgcccgggcggccgctcga 17
>gb|AC149545.1| Populus trichocarpa clone Pop1-71J23, complete sequence
Length = 103543
Score = 42.1 bits (21), Expect = 0.062
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 297 cacacacatacatatatgtatgtaaatatatatgtat 333
|||| ||||||||||||||||||| ||| |||||||
Sbjct: 96727 cacatacatacatatatgtatgtatgtatctatgtat 96691
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1497 gtacctgcccgggcggccgc 1516
||||||||||||||||||||
Sbjct: 289 gtacctgcccgggcggccgc 270
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1497 gtacctgcccgggcggccgc 1516
||||||||||||||||||||
Sbjct: 656 gtacctgcccgggcggccgc 637
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgc 1516
||||||||||||||||||||
Sbjct: 625 gtacctgcccgggcggccgc 644
>gb|CV281627.1|CV281627 WS0182.B21_G23 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0182_G23 3', mRNA sequence
Length = 790
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 304 atacatatatgtatgtaaatatatatgtatag 335
|||||||||||| |||| |||||||| |||||
Sbjct: 230 atacatatatgtgtgtatatatatatatatag 199
>gb|DN491216.1|DN491216 UM74TE02.3pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM74TE02 3', mRNA sequence
Length = 809
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 304 atacatatatgtatgtaaatatatatgtatag 335
|||||||||||| |||| |||||||| |||||
Sbjct: 177 atacatatatgtgtgtatatatatatatatag 146
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 127,115
Number of Sequences: 369679
Number of extensions: 127115
Number of successful extensions: 35912
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35780
Number of HSP's gapped (non-prelim): 126
length of query: 1521
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1502
effective length of database: 196,384,763
effective search space: 294969914026
effective search space used: 294969914026
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)