BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131555.2.3
         (622 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CV245418.1|CV245418  WS0257.B21_F20 PT-MB-N-A-15 Populus ...    40   0.098
gb|CV260852.1|CV260852  WS02015.B21_C22 PTxN-IB-N-A-11 Popul...    40   0.098
gb|CV279266.1|CV279266  WS0148.B21_P15 PTxD-IL-A-5 Populus t...    40   0.098
gb|DN489752.1|DN489752  T076A08.3pR Populus shoot meristem c...    40   0.098
gb|DT520028.1|DT520028  WS02446.B21.1_G01 PTxD-ICC-N-A-14 Po...    40   0.098
gb|CV276675.1|CV276675  WS0141.B21_H14 PTxD-IL-A-5 Populus t...    38   0.39 

>gb|CV245418.1|CV245418 WS0257.B21_F20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS0257_F20 3', mRNA sequence
          Length = 662

 Score = 40.1 bits (20), Expect = 0.098
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 529 tcagcaacatcacgaacatc 548
           ||||||||||||||||||||
Sbjct: 599 tcagcaacatcacgaacatc 618



>gb|CV260852.1|CV260852 WS02015.B21_C22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS02015_C22 3', mRNA sequence
          Length = 895

 Score = 40.1 bits (20), Expect = 0.098
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 529 tcagcaacatcacgaacatc 548
           ||||||||||||||||||||
Sbjct: 422 tcagcaacatcacgaacatc 441



>gb|CV279266.1|CV279266 WS0148.B21_P15 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
           cDNA clone WS0148_P15 3', mRNA sequence
          Length = 764

 Score = 40.1 bits (20), Expect = 0.098
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 529 tcagcaacatcacgaacatc 548
           ||||||||||||||||||||
Sbjct: 425 tcagcaacatcacgaacatc 444



>gb|DN489752.1|DN489752 T076A08.3pR Populus shoot meristem cDNA library Populus tremula x
           Populus tremuloides cDNA clone T076A08 3', mRNA sequence
          Length = 686

 Score = 40.1 bits (20), Expect = 0.098
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 529 tcagcaacatcacgaacatc 548
           ||||||||||||||||||||
Sbjct: 516 tcagcaacatcacgaacatc 535



>gb|DT520028.1|DT520028 WS02446.B21.1_G01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02446_G01 3', mRNA sequence
          Length = 838

 Score = 40.1 bits (20), Expect = 0.098
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 529 tcagcaacatcacgaacatc 548
           ||||||||||||||||||||
Sbjct: 426 tcagcaacatcacgaacatc 445



>gb|CV276675.1|CV276675 WS0141.B21_H14 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
           cDNA clone WS0141_H14 3', mRNA sequence
          Length = 742

 Score = 38.2 bits (19), Expect = 0.39
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 370 tatacagagttgacatcatcttc 392
           ||||||||||||||||| |||||
Sbjct: 369 tatacagagttgacatcttcttc 391



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 75,934
Number of Sequences: 369679
Number of extensions: 75934
Number of successful extensions: 19664
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19658
Number of HSP's gapped (non-prelim): 6
length of query: 622
length of database: 203,408,664
effective HSP length: 19
effective length of query: 603
effective length of database: 196,384,763
effective search space: 118420012089
effective search space used: 118420012089
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)