BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131555.2.1
         (1236 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AJ534481.1|AJ534481  AJ534481 Populus euphratica root and...    42   0.050
gb|CA933471.1|CA933471  MTU5CS.P8.E06 Aspen stem cDNA Librar...    40   0.20 
gb|CF118925.1|CF118925  MTU10CS.P11.C02 Aspen stem cDNA Libr...    40   0.20 
gb|AF139835.1|AF139835  Populus tremula x Populus tremuloide...    40   0.20 

>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
            clone 46, mRNA sequence
          Length = 574

 Score = 42.1 bits (21), Expect = 0.050
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1215 gtacctgcccgggcggccgct 1235
            |||||||||||||||||||||
Sbjct: 479  gtacctgcccgggcggccgct 499



>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA
            sequence
          Length = 606

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1215 gtacctgcccgggcggccgc 1234
            ||||||||||||||||||||
Sbjct: 289  gtacctgcccgggcggccgc 270



>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
            mRNA sequence
          Length = 786

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1215 gtacctgcccgggcggccgc 1234
            ||||||||||||||||||||
Sbjct: 656  gtacctgcccgggcggccgc 637




 Score = 40.1 bits (20), Expect = 0.20
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1215 gtacctgcccgggcggccgc 1234
            ||||||||||||||||||||
Sbjct: 625  gtacctgcccgggcggccgc 644



>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein TIR1
            (TIR1) mRNA, complete cds
          Length = 2646

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1216 tacctgcccgggcggccgct 1235
            ||||||||||||||||||||
Sbjct: 65   tacctgcccgggcggccgct 46



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 154,957
Number of Sequences: 369679
Number of extensions: 154957
Number of successful extensions: 39970
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39964
Number of HSP's gapped (non-prelim): 6
length of query: 1236
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1217
effective length of database: 196,384,763
effective search space: 239000256571
effective search space used: 239000256571
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)