BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.593
(1027 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX655836.1|CX655836 PO02040G07 Poplar SC cDNA library Po... 46 0.003
gb|CX658483.1|CX658483 PO01035F02 Poplar SC cDNA library Po... 46 0.003
gb|CX659018.1|CX659018 PO01025E01 Poplar SC cDNA library Po... 46 0.003
gb|CX659039.1|CX659039 PO01025G05 Poplar SC cDNA library Po... 46 0.003
gb|CX659801.1|CX659801 PO01014C09 Poplar SC cDNA library Po... 46 0.003
gb|CX659804.1|CX659804 PO01014C12 Poplar SC cDNA library Po... 46 0.003
gb|CA821239.1|CA821239 RA01E01 three-week-old roots incubat... 44 0.010
>gb|CX655836.1|CX655836 PO02040G07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02040G07 5', mRNA sequence
Length = 185
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 508 ccttcaagacggccatctggttctggatgacgccgcagtcgcccaagccgtcgtgccac 566
|||||||||| || || |||||||||||||| || ||||| || ||||| || ||||||
Sbjct: 101 ccttcaagacagcaatttggttctggatgacaccacagtctccaaagccctcatgccac 159
>gb|CX658483.1|CX658483 PO01035F02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01035F02 5', mRNA sequence
Length = 427
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 508 ccttcaagacggccatctggttctggatgacgccgcagtcgcccaagccgtcgtgccac 566
|||||||||| || || |||||||||||||| || ||||| || ||||| || ||||||
Sbjct: 39 ccttcaagacagcaatttggttctggatgacaccacagtctccaaagccctcatgccac 97
>gb|CX659018.1|CX659018 PO01025E01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01025E01 5', mRNA sequence
Length = 417
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 508 ccttcaagacggccatctggttctggatgacgccgcagtcgcccaagccgtcgtgccac 566
|||||||||| || || |||||||||||||| || ||||| || ||||| || ||||||
Sbjct: 38 ccttcaagacagcaatttggttctggatgacaccacagtctccaaagccctcatgccac 96
>gb|CX659039.1|CX659039 PO01025G05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01025G05 5', mRNA sequence
Length = 558
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 508 ccttcaagacggccatctggttctggatgacgccgcagtcgcccaagccgtcgtgccac 566
|||||||||| || || |||||||||||||| || ||||| || ||||| || ||||||
Sbjct: 179 ccttcaagacagcaatttggttctggatgacaccacagtctccaaagccctcatgccac 237
>gb|CX659801.1|CX659801 PO01014C09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01014C09 5', mRNA sequence
Length = 397
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 508 ccttcaagacggccatctggttctggatgacgccgcagtcgcccaagccgtcgtgccac 566
|||||||||| || || |||||||||||||| || ||||| || ||||| || ||||||
Sbjct: 18 ccttcaagacagcaatttggttctggatgacaccacagtctccaaagccctcatgccac 76
>gb|CX659804.1|CX659804 PO01014C12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01014C12 5', mRNA sequence
Length = 471
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 508 ccttcaagacggccatctggttctggatgacgccgcagtcgcccaagccgtcgtgccac 566
|||||||||| || || |||||||||||||| || ||||| || ||||| || ||||||
Sbjct: 92 ccttcaagacagcaatttggttctggatgacaccacagtctccaaagccctcatgccac 150
>gb|CA821239.1|CA821239 RA01E01 three-week-old roots incubated in 5uM indole-3-acetic acid
24h before harvesting Populus alba x Populus tremula
cDNA 5', mRNA sequence
Length = 650
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 508 ccttcaagacggccatctggttctggatgacgccgcagtcgcccaa 553
|||||||||| || || |||||||||||||| || ||||| |||||
Sbjct: 228 ccttcaagacagcaatttggttctggatgacaccacagtctcccaa 273
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 69,764
Number of Sequences: 369679
Number of extensions: 69764
Number of successful extensions: 17485
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17466
Number of HSP's gapped (non-prelim): 19
length of query: 1027
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1008
effective length of database: 196,384,763
effective search space: 197955841104
effective search space used: 197955841104
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)