BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.444
(1020 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX168538.1|CX168538 A01_69-121_01.ab1 leaf inoculated wi... 46 0.003
gb|CX170857.1|CX170857 H07_69-80_15.ab1 leaf inoculated wit... 46 0.003
gb|CX174577.1|CX174577 F11_69-36_11.ab1 leaf inoculated wit... 46 0.003
>gb|CX168538.1|CX168538 A01_69-121_01.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 723
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 390 acgcccacgcccacgcccacgcc 412
|||||||||||||||||||||||
Sbjct: 446 acgcccacgcccacgcccacgcc 424
>gb|CX170857.1|CX170857 H07_69-80_15.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 623
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 390 acgcccacgcccacgcccacgcc 412
|||||||||||||||||||||||
Sbjct: 441 acgcccacgcccacgcccacgcc 419
>gb|CX174577.1|CX174577 F11_69-36_11.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 718
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 390 acgcccacgcccacgcccacgcc 412
|||||||||||||||||||||||
Sbjct: 437 acgcccacgcccacgcccacgcc 415
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,828
Number of Sequences: 369679
Number of extensions: 71828
Number of successful extensions: 19790
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19772
Number of HSP's gapped (non-prelim): 15
length of query: 1020
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1001
effective length of database: 196,384,763
effective search space: 196581147763
effective search space used: 196581147763
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)