BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.288
(1775 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT477707.1|DT477707 WS02520.BR_L23 PT-MB-N-A-15 Populus ... 119 4e-025
gb|DT517942.1|DT517942 WS02435.B21_L24 PTxD-ICC-N-A-14 Popu... 119 4e-025
gb|DT482773.1|DT482773 WS02520.B21_L23 PT-MB-N-A-15 Populus... 113 2e-023
gb|DT515130.1|DT515130 WS02426.B21_L16 PTxD-ICC-N-A-14 Popu... 113 2e-023
gb|CK319271.1|CK319271 X9P08g10 Populus stem seasonal libra... 111 9e-023
gb|BU882016.1|BU882016 UM70TE07 Populus flower cDNA library... 105 6e-021
gb|CK318149.1|CK318149 B9P06a02 Populus stem seasonal libra... 105 6e-021
gb|CX171345.1|CX171345 G05_69-58_13.ab1 leaf inoculated wit... 105 6e-021
gb|DT483042.1|DT483042 WS02521.B21_H22 PT-MB-N-A-15 Populus... 105 6e-021
gb|CV248198.1|CV248198 WS0112.B21_M13 PT-P-FL-A-2 Populus t... 98 1e-018
gb|DT477970.1|DT477970 WS02521.BR_H22 PT-MB-N-A-15 Populus ... 96 6e-018
gb|CK098046.1|CK098046 A002P49.5pR Hybrid aspen plasmid lib... 84 2e-014
gb|CV240046.1|CV240046 WS0234.B21_D21 PT-MB-A-13 Populus tr... 82 8e-014
gb|CV265311.1|CV265311 WS02026.B21_O13 PTxN-IB-N-A-11 Popul... 82 8e-014
gb|DT520636.1|DT520636 WS02448.B21_B21 PTxD-ICC-N-A-14 Popu... 82 8e-014
gb|DT521443.1|DT521443 WS02034.B21_E21 PTxN-IB-N-A-11 Popul... 82 8e-014
gb|CF228341.1|CF228341 PtaXM0011H11H1115 Poplar cDNA librar... 76 5e-012
gb|CK087304.1|CK087304 A002P49.3pR Hybrid aspen plasmid lib... 76 5e-012
gb|CK097522.1|CK097522 UB53CPD10.3pR Populus active cambium... 76 5e-012
gb|CX176286.1|CX176286 H12_69-75_16.ab1 leaf inoculated wit... 70 3e-010
gb|BU886995.1|BU886995 R053C02 Populus root cDNA library Po... 66 5e-009
gb|CX178181.1|CX178181 C05_45-71_05.ab1 leaf inoculated wit... 66 5e-009
gb|DT520714.1|DT520714 WS02448.B21_F10 PTxD-ICC-N-A-14 Popu... 64 2e-008
gb|AI161556.1|AI161556 A002P49U Hybrid aspen plasmid librar... 62 8e-008
gb|AJ770253.1|AJ770253 AJ770253 Populus euphratica leaf 3-6... 62 8e-008
gb|BU823520.1|BU823520 UB53CPD10 Populus tremula cambium cD... 58 1e-006
gb|CA927708.1|CA927708 MTU6TR.P12.A10 Aspen root cDNA Libra... 58 1e-006
gb|CA928923.1|CA928923 MTU6TR.P8.D10 Aspen root cDNA Librar... 58 1e-006
gb|BU873282.1|BU873282 Q053D02 Populus flower cDNA library ... 56 5e-006
gb|CF234107.1|CF234107 PtaJXO2F2F0212 Poplar cDNA library f... 54 2e-005
gb|CK107320.1|CK107320 UB53CPD10.5pR Populus active cambium... 54 2e-005
gb|BP931843.1|BP931843 BP931843 full-length enriched poplar... 54 2e-005
gb|DT509624.1|DT509624 WS02424.BR_E01 PTxD-ICC-N-A-14 Popul... 54 2e-005
gb|CV239059.1|CV239059 WS0231.B21_D05 PT-MB-A-13 Populus tr... 52 7e-005
gb|CV241896.1|CV241896 WS02513.B21_I23 PT-MB-N-A-15 Populus... 52 7e-005
gb|DT520134.1|DT520134 WS02446.B21.1_K22 PTxD-ICC-N-A-14 Po... 52 7e-005
gb|CV242652.1|CV242652 WS02515.B21_K14 PT-MB-N-A-15 Populus... 50 3e-004
gb|CV259447.1|CV259447 WS02011.B21_G05 PTxN-IB-N-A-11 Popul... 50 3e-004
gb|CX170045.1|CX170045 G01_69-106_13.ab1 leaf inoculated wi... 50 3e-004
gb|CX179219.1|CX179219 A03_45-73_01.ab1 leaf inoculated wit... 50 3e-004
gb|CX179431.1|CX179431 F05_45-20_11.ab1 leaf inoculated wit... 50 3e-004
gb|CX179975.1|CX179975 G01_45-56_13.ab1 leaf inoculated wit... 50 3e-004
gb|CX185452.1|CX185452 B04_45-58_04.ab1 leaf inoculated wit... 50 3e-004
gb|DT483652.1|DT483652 WS02523.B21_D04 PT-MB-N-A-15 Populus... 50 3e-004
gb|DT495226.1|DT495226 WS0112.BR_M13 PT-P-FL-A-2 Populus tr... 50 3e-004
gb|DT510501.1|DT510501 WS02426.BR_L16 PTxD-ICC-N-A-14 Popul... 50 3e-004
gb|CX185938.1|CX185938 A04_45-95_02.ab1 leaf inoculated wit... 48 0.001
gb|BP924145.1|BP924145 BP924145 full-length enriched poplar... 48 0.001
gb|CA932212.1|CA932212 MTU5CS.P10.A10 Aspen stem cDNA Libra... 46 0.005
gb|CA932236.1|CA932236 MTU5CS.P10.D08 Aspen stem cDNA Libra... 46 0.005
gb|CA932392.1|CA932392 MTU5CS.P12.D04 Aspen stem cDNA Libra... 46 0.005
gb|CA932870.1|CA932870 MTU5CS.P18.E07 Aspen stem cDNA Libra... 46 0.005
gb|CF231751.1|CF231751 PtaC0025C9C0905 Poplar cDNA library ... 46 0.005
gb|CF232587.1|CF232587 PtaJXO0013C2C0206 Poplar cDNA librar... 46 0.005
gb|CV230052.1|CV230052 WS01915.B21_E11 PT-DX-N-A-10 Populus... 46 0.005
gb|CV258570.1|CV258570 WS0249.B21_O15 PTxD-ICC-N-A-14 Popul... 46 0.005
gb|CV265199.1|CV265199 WS02026.B21_J13 PTxN-IB-N-A-11 Popul... 46 0.005
gb|BP932100.1|BP932100 BP932100 full-length enriched poplar... 46 0.005
gb|DT514230.1|DT514230 WS02424.B21_E01 PTxD-ICC-N-A-14 Popu... 46 0.005
gb|CK089821.1|CK089821 C036P19.3pR Populus strain T89 leave... 40 0.28
gb|CK097135.1|CK097135 UB40BPA05.3pR Populus active cambium... 40 0.28
gb|CV276493.1|CV276493 WS0179.B21_P16 PTxD-NR-A-8 Populus t... 40 0.28
gb|CV277883.1|CV277883 WS0144.B21_N08 PTxD-IL-A-5 Populus t... 40 0.28
gb|CV278727.1|CV278727 WS0147.B21_D21 PTxD-IL-A-5 Populus t... 40 0.28
gb|CX168320.1|CX168320 H02_69-5_16.ab1 leaf inoculated with... 40 0.28
>gb|DT477707.1|DT477707 WS02520.BR_L23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_L23 5', mRNA sequence
Length = 869
Score = 119 bits (60), Expect = 4e-025
Identities = 324/412 (78%)
Strand = Plus / Plus
Query: 886 ctggaaacgagcaatttgtggcagagataagcaaatgggttttccatgagaggggacatc 945
|||| |||||||| |||||| | || | ||||||||||| ||||||| || || ||||
Sbjct: 89 ctggtaacgagcagtttgtgactgaacttagcaaatgggtcttccatgtaagaggtcatc 148
Query: 946 taaaggctgttaatgttaggcatcacaaggttggggagaccaatgaaccaggcatgtacc 1005
| |||||||| ||| |||| || |||| | |||||| || |||| |||| |||||
Sbjct: 149 tgaaggctgtgaatcttagacacaacaaagctggggaaacagatgagccagcaatgtata 208
Query: 1006 gcattaatgatgacctggaatactctgttgagatctatgaatggtccggaacaagctgga 1065
| || || ||||| ||||| | ||||||||||| ||||||||||| |||| ||||||
Sbjct: 209 ggatcaaagatgatctggatttttctgttgagatatatgaatggtctggaaagagctggg 268
Query: 1066 agccgtatgttgctgatgatgtgcagcttcaatttttcatgatgagcccttacgttctga 1125
| || ||||| || ||||||| ||| | || ||| ||||||||||||||| || |||
Sbjct: 269 aaccatatgtggccaatgatgtccaggtccagctttacatgatgagcccttatgtgttga 328
Query: 1126 aaactatgtcgactgacaacaagggtttgtattcaacaaccttcaaagttccagatgttt 1185
|||| | || | |||||| ||||| |||||| ||| | ||||| ||||| |||||||
Sbjct: 329 aaaccctatcaaatgacaagaagggcttgtatcatacatcattcaaggttcctgatgttt 388
Query: 1186 atggagttttccagttcaaagttgagtaccaaagactgggatatactggtctgtctttta 1245
|||| ||||||||||| || |||||||| || || || ||||||||| | |||||| |
Sbjct: 389 atggggttttccagtttaaggttgagtatcacaggcttggatatactagcctgtctctct 448
Query: 1246 caaagcagattccagtacgtccttacagacataatgagtatgagagattcat 1297
| || ||||||||||| || || | |||||| ||||| ||||||||||||||
Sbjct: 449 ccaaacagattccagttcggcccttcagacacaatgaatatgagagattcat 500
>gb|DT517942.1|DT517942 WS02435.B21_L24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_L24 3', mRNA sequence
Length = 905
Score = 119 bits (60), Expect = 4e-025
Identities = 324/412 (78%)
Strand = Plus / Minus
Query: 886 ctggaaacgagcaatttgtggcagagataagcaaatgggttttccatgagaggggacatc 945
|||| |||||||| |||||| | || | ||||||||||| ||||||| || || ||||
Sbjct: 890 ctggtaacgagcagtttgtgactgaacttagcaaatgggtcttccatgtaagaggtcatc 831
Query: 946 taaaggctgttaatgttaggcatcacaaggttggggagaccaatgaaccaggcatgtacc 1005
| |||||||| ||| |||| || |||| | |||||| || |||| |||| |||||
Sbjct: 830 tgaaggctgtgaatcttagacacaacaaagctggggaaacagatgagccagcaatgtata 771
Query: 1006 gcattaatgatgacctggaatactctgttgagatctatgaatggtccggaacaagctgga 1065
| || || ||||| ||||| | ||||||||||| ||||||||||| |||| ||||||
Sbjct: 770 ggatcaaagatgatctggatttttctgttgagatatatgaatggtctggaaagagctggg 711
Query: 1066 agccgtatgttgctgatgatgtgcagcttcaatttttcatgatgagcccttacgttctga 1125
| || ||||| || ||||||| ||| | || ||| ||||||||||||||| || |||
Sbjct: 710 aaccatatgtggccaatgatgtccaggtccagctttacatgatgagcccttatgtgttga 651
Query: 1126 aaactatgtcgactgacaacaagggtttgtattcaacaaccttcaaagttccagatgttt 1185
|||| | || | |||||| ||||| |||||| ||| | ||||| ||||| |||||||
Sbjct: 650 aaaccctatcaaatgacaagaagggcttgtatcatacatcattcaaggttcctgatgttt 591
Query: 1186 atggagttttccagttcaaagttgagtaccaaagactgggatatactggtctgtctttta 1245
|||| ||||||||||| || |||||||| || || || ||||||||| | |||||| |
Sbjct: 590 atggggttttccagtttaaggttgagtatcacaggcttggatatactagcctgtctctct 531
Query: 1246 caaagcagattccagtacgtccttacagacataatgagtatgagagattcat 1297
| || ||||||||||| || || | |||||| ||||| ||||||||||||||
Sbjct: 530 ccaaacagattccagttcggcccttcagacacaatgaatatgagagattcat 479
>gb|DT482773.1|DT482773 WS02520.B21_L23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_L23 3', mRNA sequence
Length = 849
Score = 113 bits (57), Expect = 2e-023
Identities = 216/269 (80%)
Strand = Plus / Minus
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtg 1088
||||||||||| ||||||||||| |||| |||||| | || ||||| || |||||||
Sbjct: 789 tctgttgagatatatgaatggtctggaaagagctgggaaccatatgtggccaatgatgtc 730
Query: 1089 cagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaag 1148
||| | || ||| ||||||||||||||| || ||||||| | || | |||||| |||
Sbjct: 729 caggtccagctttacatgatgagcccttatgtgttgaaaaccctatcaaatgacaagaag 670
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
|| |||||| ||| | ||||| ||||| ||||||||||| ||||||||||| || |||
Sbjct: 669 ggcttgtatcatacatcattcaaggttcctgatgtttatggggttttccagtttaaggtt 610
Query: 1209 gagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcct 1268
||||| || || || ||||||||| | |||||| | | || ||||||||||| || ||
Sbjct: 609 gagtatcacaggcttggatatactagcctgtctctctccaaacagattccagttcggccc 550
Query: 1269 tacagacataatgagtatgagagattcat 1297
| |||||| ||||| ||||||||||||||
Sbjct: 549 ttcagacacaatgaatatgagagattcat 521
>gb|DT515130.1|DT515130 WS02426.B21_L16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_L16 3', mRNA sequence
Length = 875
Score = 113 bits (57), Expect = 2e-023
Identities = 216/269 (80%)
Strand = Plus / Minus
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtg 1088
||||||||||| ||||||||||| |||| |||||| | || ||||| || |||||||
Sbjct: 782 tctgttgagatatatgaatggtctggaaagagctgggaaccatatgtggccaatgatgtc 723
Query: 1089 cagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaag 1148
||| | || ||| ||||||||||||||| || ||||||| | || | |||||| |||
Sbjct: 722 caggtccagctttacatgatgagcccttatgtgttgaaaaccctatcaaatgacaagaag 663
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
|| |||||| ||| | ||||| ||||| ||||||||||| ||||||||||| || |||
Sbjct: 662 ggcttgtatcatacatcattcaaggttcctgatgtttatggggttttccagtttaaggtt 603
Query: 1209 gagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcct 1268
||||| || || || ||||||||| | |||||| | | || ||||||||||| || ||
Sbjct: 602 gagtatcacaggcttggatatactagcctgtctctctccaaacagattccagttcggccc 543
Query: 1269 tacagacataatgagtatgagagattcat 1297
| |||||| ||||| ||||||||||||||
Sbjct: 542 ttcagacacaatgaatatgagagattcat 514
>gb|CK319271.1|CK319271 X9P08g10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 717
Score = 111 bits (56), Expect = 9e-023
Identities = 324/412 (78%), Gaps = 1/412 (0%)
Strand = Plus / Plus
Query: 886 ctggaaacgagcaatttgtggcagagataagcaaatgggttttccatgagaggggacatc 945
|||| |||||||| |||||| | || | ||||||||||| ||||||| || || ||||
Sbjct: 263 ctggtaacgagcagtttgtgactgaacttagcaaatgggtcttccatgtaagaggtcatc 322
Query: 946 taaaggctgttaatgttaggcatcacaaggttggggagaccaatgaaccaggcatgtacc 1005
| |||||||| ||| |||| || ||||| | |||||| || |||| |||| |||||
Sbjct: 323 tgaaggctgtgaatcttagacaccacaaagctggggaaacagatgagccagcaatgtata 382
Query: 1006 gcattaatgatgacctggaatactctgttgagatctatgaatggtccggaacaagctgga 1065
| || || ||||| ||||| | ||||||||||| ||||||||||| |||| ||||||
Sbjct: 383 ggatcaaagatgatctggatttttctgttgagatatatgaatggtctggaaagagctggg 442
Query: 1066 agccgtatgttgctgatgatgtgcagcttcaatttttcatgatgagcccttacgttctga 1125
| || ||||| || ||||||| ||| | || ||| ||||||||||||||| || |||
Sbjct: 443 aaccatatgtggccaatgatgtccaggtccagctttacatgatgagcccttatgtgttga 502
Query: 1126 aaactatgtcgactgacaacaagggtttgtattcaacaaccttcaaagttccagatgttt 1185
|||| | || | |||||| ||||| |||||| ||| | ||||| ||||| |||||||
Sbjct: 503 aaaccctatcaaatgacaagaagggcttgtatcatacatcattcaaggttcctgatgttt 562
Query: 1186 atggagttttccagttcaaagttgagtaccaaagactgggatatactggtctgtctttta 1245
|||| ||||||||||| || |||||||| || || || ||||||||| | ||||| |
Sbjct: 563 atggggttttccagtttaaggttgagtatcacaggcttggatatactagcctgtcactct 622
Query: 1246 caaagcagattccagtacgtccttacagacataatgagtatgagagattcat 1297
| || ||||||||||| || || | |||||| ||||| ||||||||||||||
Sbjct: 623 ccaa-cagattccagttcggcccttcagacacaatgaatatgagagattcat 673
>gb|BU882016.1|BU882016 UM70TE07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 528
Score = 105 bits (53), Expect = 6e-021
Identities = 215/269 (79%)
Strand = Plus / Plus
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtg 1088
||||||||||| ||||||||||| |||| |||||| | || ||||| || |||||||
Sbjct: 150 tctgttgagatatatgaatggtctggaaagagctgggaaccatatgtggccaatgatgtc 209
Query: 1089 cagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaag 1148
||| | || ||| ||||||||||||||| || ||||||| | || |||||| |||
Sbjct: 210 caggtccagctttacatgatgagcccttatgtgttgaaaaccctatcagatgacaagaag 269
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
|| |||||| ||| | ||||| ||||| ||||||||||| ||||||||||| || |||
Sbjct: 270 ggcttgtatcatacatcattcaaggttcctgatgtttatggggttttccagtttaaggtt 329
Query: 1209 gagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcct 1268
||||| || || || ||||||||| | |||||| | | || ||||||||||| || ||
Sbjct: 330 gagtatcacaggcttggatatactagcctgtctctctccaaacagattccagttcggccc 389
Query: 1269 tacagacataatgagtatgagagattcat 1297
| |||||| ||||| ||||||||||||||
Sbjct: 390 ttcagacacaatgaatatgagagattcat 418
>gb|CK318149.1|CK318149 B9P06a02 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 698
Score = 105 bits (53), Expect = 6e-021
Identities = 215/269 (79%)
Strand = Plus / Plus
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtg 1088
||||||||||| ||||||||||| |||| |||||| | || ||||| || |||||||
Sbjct: 53 tctgttgagatatatgaatggtctggaaagagctgggaaccatatgtggccaatgatgtc 112
Query: 1089 cagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaag 1148
||| | || ||| ||||||||||||||| || ||||||| | || | |||||| |||
Sbjct: 113 caggtccagctttacatgatgagcccttatgtgttgaaaaccctatcaaatgacaagaag 172
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
|| |||||| ||| | ||||| ||||| ||||||||||| ||||||||||| || |||
Sbjct: 173 ggcttgtatcatacatcattcaaggttcctgatgtttatggggttttccagtttaaggtt 232
Query: 1209 gagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcct 1268
||||| || || || ||||||||| | ||||| | | || ||||||||||| || ||
Sbjct: 233 gagtatcacaggcttggatatactagcctgtcactctccaaacagattccagttcggccc 292
Query: 1269 tacagacataatgagtatgagagattcat 1297
| |||||| ||||| ||||||||||||||
Sbjct: 293 ttcagacacaatgaatatgagagattcat 321
>gb|CX171345.1|CX171345 G05_69-58_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 655
Score = 105 bits (53), Expect = 6e-021
Identities = 299/381 (78%)
Strand = Plus / Plus
Query: 917 caaatgggttttccatgagaggggacatctaaaggctgttaatgttaggcatcacaaggt 976
||||||||| ||||||| || || ||||| |||||||| ||| |||| || |||||||
Sbjct: 230 caaatgggtcttccatgtaagaggtcatctgaaggctgtgaatcttagacaccacaaggc 289
Query: 977 tggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaatactctgttga 1036
|||||| || |||| |||| ||||| | || || ||||| ||||| | ||||||||
Sbjct: 290 tggggaaacagatgagccagcaatgtataggatcaaagatgatctggatttttctgttga 349
Query: 1037 gatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtgcagcttca 1096
||| ||||||||||| |||| |||||| | || ||||| || ||||||| ||| | ||
Sbjct: 350 gatatatgaatggtctggaaagagctgggaaccatatgtggccaatgatgtccaggtcca 409
Query: 1097 atttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaagggtttgta 1156
||| ||||||||||||||| || ||||||| | || |||||| ||||| |||||
Sbjct: 410 gctttacatgatgagcccttatgtgttgaaaaccctatcagatgacaagaagggcttgta 469
Query: 1157 ttcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagttgagtacca 1216
| ||| | ||||| ||||| ||||||||||| ||||||||||| || |||||||| ||
Sbjct: 470 tcatacatcattcaaggttcctgatgtttatggggttttccagtttaaggttgagtatca 529
Query: 1217 aagactgggatatactggtctgtcttttacaaagcagattccagtacgtccttacagaca 1276
|| || ||||||||| ||||| | | || ||||||||||| || || | ||||||
Sbjct: 530 caggcttggatatactaacctgtcactctccaaacagattccagttcggcccttcagaca 589
Query: 1277 taatgagtatgagagattcat 1297
||||| ||||||||||||||
Sbjct: 590 caatgaatatgagagattcat 610
>gb|DT483042.1|DT483042 WS02521.B21_H22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_H22 3', mRNA sequence
Length = 831
Score = 105 bits (53), Expect = 6e-021
Identities = 215/269 (79%)
Strand = Plus / Minus
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtg 1088
||||||||||| ||||||||||| |||| |||||| | || ||||| || |||||||
Sbjct: 750 tctgttgagatatatgaatggtctggaaagagctgggaaccatatgtggccaatgatgtc 691
Query: 1089 cagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaag 1148
||| | || ||| ||||||||||||||| || ||||||| | || | |||||| |||
Sbjct: 690 caggtccagctttacatgatgagcccttatgtgttgaaaaccctatcaaatgacaagaag 631
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
|| |||||| ||| | ||||| ||||| ||||||||||| ||||||||||| || |||
Sbjct: 630 ggcttgtatcatacatcattcaaggttcctgatgtttatggggttttccagtttaaggtt 571
Query: 1209 gagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcct 1268
||||| || || || ||||||||| | |||||| | | || ||||||||||| | ||
Sbjct: 570 gagtatcacaggcttggatatactagcctgtctctctccaaacagattccagtttggccc 511
Query: 1269 tacagacataatgagtatgagagattcat 1297
| |||||| ||||| ||||||||||||||
Sbjct: 510 ttcagacacaatgaatatgagagattcat 482
>gb|CV248198.1|CV248198 WS0112.B21_M13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_M13
3', mRNA sequence
Length = 749
Score = 97.6 bits (49), Expect = 1e-018
Identities = 215/269 (79%), Gaps = 1/269 (0%)
Strand = Plus / Minus
Query: 1030 ctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtgc 1089
|||||||||| ||||||||||| |||| |||||| | || ||||| || ||||||| |
Sbjct: 749 ctgttgagatatatgaatggtctggaaagagctgggaaccatatgtggccaatgatgtcc 690
Query: 1090 agcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactg-acaacaag 1148
|| | || ||| ||||||||||||||| || ||||||| | || | || |||| |||
Sbjct: 689 aggtccagctttacatgatgagcccttatgtgttgaaaaccctatcaaatgnacaagaag 630
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
|| |||||| ||| | ||||| ||||| ||||||||||| ||||||||||| || |||
Sbjct: 629 ggcttgtatcatacatcattcaaggttcctgatgtttatggggttttccagtttaaggtt 570
Query: 1209 gagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcct 1268
||||| || || || ||||||||| | |||||| | | || ||||||||||| || ||
Sbjct: 569 gagtatcacaggcttggatatactagcctgtctctctccaaacagattccagttcggccc 510
Query: 1269 tacagacataatgagtatgagagattcat 1297
| |||||| ||||| ||||||||||||||
Sbjct: 509 ttcagacacaatgaatatgagagattcat 481
>gb|DT477970.1|DT477970 WS02521.BR_H22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_H22 5', mRNA sequence
Length = 694
Score = 95.6 bits (48), Expect = 6e-018
Identities = 294/376 (78%)
Strand = Plus / Plus
Query: 886 ctggaaacgagcaatttgtggcagagataagcaaatgggttttccatgagaggggacatc 945
|||| |||||||| |||||| | || | ||||||||||| ||||||| || || ||||
Sbjct: 319 ctggtaacgagcagtttgtgactgaacttagcaaatgggtcttccatgtaagaggtcatc 378
Query: 946 taaaggctgttaatgttaggcatcacaaggttggggagaccaatgaaccaggcatgtacc 1005
| |||||||| ||| |||| || |||| | |||||| || |||| |||| |||||
Sbjct: 379 tgaaggctgtgaatcttagacacaacaaagctggggaaacagatgagccagcaatgtata 438
Query: 1006 gcattaatgatgacctggaatactctgttgagatctatgaatggtccggaacaagctgga 1065
| || || ||||| ||||| | ||||||||||| ||||||||||| |||| ||||||
Sbjct: 439 ggatcaaagatgatctggatttttctgttgagatatatgaatggtctggaaagagctggg 498
Query: 1066 agccgtatgttgctgatgatgtgcagcttcaatttttcatgatgagcccttacgttctga 1125
| || ||||| || ||||||| ||| | || ||| ||||||||||||||| || |||
Sbjct: 499 aaccatatgtggccaatgatgtccaggtccagctttacatgatgagcccttatgtgttga 558
Query: 1126 aaactatgtcgactgacaacaagggtttgtattcaacaaccttcaaagttccagatgttt 1185
|||| | || | |||||| ||||| |||||| ||| | ||||| ||||| |||||||
Sbjct: 559 aaaccctatcaaatgacaagaagggcttgtatcatacatcattcaaggttcctgatgttt 618
Query: 1186 atggagttttccagttcaaagttgagtaccaaagactgggatatactggtctgtctttta 1245
|||| ||||||||||| || |||||||| || || || ||||||||| | |||||| |
Sbjct: 619 atggggttttccagtttaaggttgagtatcacaggcttggatatactagcctgtctctct 678
Query: 1246 caaagcagattccagt 1261
| || |||||||||||
Sbjct: 679 ccaaacagattccagt 694
>gb|CK098046.1|CK098046 A002P49.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A002P49 5', mRNA sequence
Length = 415
Score = 83.8 bits (42), Expect = 2e-014
Identities = 219/278 (78%)
Strand = Plus / Plus
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtg 1088
||||||||||| ||||||||||| |||| |||||| |||| ||||| || |||||||
Sbjct: 124 tctgttgagatatatgaatggtctggaaagagctgggagccatatgtggccaatgatgtt 183
Query: 1089 cagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaag 1148
||| | || || | ||||||||||| || || ||||||| | || | |||||| |||
Sbjct: 184 caggtccagttctatatgatgagcccctatgtgttgaaaaccctatcaaatgacaaaaag 243
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
|| |||||| ||| | ||||| || || ||||||||||| ||||||||||| || |||
Sbjct: 244 ggcttgtatcatacatcattcaaggtgcctgatgtttatggggttttccagtttaaggtt 303
Query: 1209 gagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcct 1268
||||| | ||||| ||||||||| | |||| | | || ||||||||||| || ||
Sbjct: 304 gagtataacagacttggatatactagcctgttgctctccaaacagattccagttcggccc 363
Query: 1269 tacagacataatgagtatgagagattcataacatcagc 1306
| |||||| ||||| ||||||||||| |||||| ||||
Sbjct: 364 ttcagacacaatgaatatgagagatttataacagcagc 401
>gb|CV240046.1|CV240046 WS0234.B21_D21 PT-MB-A-13 Populus trichocarpa cDNA clone WS0234_D21
3', mRNA sequence
Length = 702
Score = 81.8 bits (41), Expect = 8e-014
Identities = 215/273 (78%)
Strand = Plus / Minus
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtg 1088
||||||||||| ||||||||||| |||| |||||| |||| ||||| || ||||||||
Sbjct: 620 tctgttgagatatatgaatggtctggaaagagctgggagccatatgtggccgatgatgtt 561
Query: 1089 cagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaag 1148
||| | || || | ||||||||||| || || ||||||| | || | |||||| |||
Sbjct: 560 caggtccagttctatatgatgagcccctatgtgttgaaaaccctatcaaatgacaagaag 501
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
|| |||||| ||| | ||||| || || ||||||||||| ||||||||||| || |||
Sbjct: 500 ggcttgtatcatacatcattcaaggtgcctgatgtttatggggttttccagtttaaggtt 441
Query: 1209 gagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcct 1268
||||| | || || ||||||||| | |||| | | || ||||||||||| || ||
Sbjct: 440 gagtataacaggcttggatatactagcctgttgctctccaaacagattccagttcggccc 381
Query: 1269 tacagacataatgagtatgagagattcataaca 1301
| |||||| ||||| ||||||||||| ||||||
Sbjct: 380 ttcagacacaatgaatatgagagatttataaca 348
>gb|CV265311.1|CV265311 WS02026.B21_O13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02026_O13 3', mRNA sequence
Length = 750
Score = 81.8 bits (41), Expect = 8e-014
Identities = 215/273 (78%)
Strand = Plus / Minus
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtg 1088
||||||||||| ||||||||||| |||| |||||| |||| ||||| || ||||||||
Sbjct: 675 tctgttgagatatatgaatggtctggaaagagctgggagccatatgtggccgatgatgtt 616
Query: 1089 cagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaag 1148
||| | || || | ||||||||||| || || ||||||| | || | |||||| |||
Sbjct: 615 caggtccagttctatatgatgagcccctatgtgttgaaaaccctatcaaatgacaagaag 556
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
|| |||||| ||| | ||||| || || ||||||||||| ||||||||||| || |||
Sbjct: 555 ggcttgtatcatacatcattcaaggtgcctgatgtttatggggttttccagtttaaggtt 496
Query: 1209 gagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcct 1268
||||| | || || ||||||||| | |||| | | || ||||||||||| || ||
Sbjct: 495 gagtataacaggcttggatatactagcctgttgctctccaaacagattccagttcggccc 436
Query: 1269 tacagacataatgagtatgagagattcataaca 1301
| |||||| ||||| ||||||||||| ||||||
Sbjct: 435 ttcagacacaatgaatatgagagatttataaca 403
>gb|DT520636.1|DT520636 WS02448.B21_B21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_B21 3', mRNA sequence
Length = 775
Score = 81.8 bits (41), Expect = 8e-014
Identities = 149/185 (80%)
Strand = Plus / Minus
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtg 1088
||||||||||| ||||||||||| |||| |||||| |||| ||||| || ||||||||
Sbjct: 677 tctgttgagatatatgaatggtctggaaagagctgggagccatatgtggccgatgatgtt 618
Query: 1089 cagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaag 1148
||| | || |||| ||||||||||| || || ||||||| | || | |||||| |||
Sbjct: 617 caggtccagttttatatgatgagcccctatgtgttgaaaaccctatcaaatgacaagaag 558
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
|| |||||| ||| | ||||| || || ||||||||||| ||||||||||| || |||
Sbjct: 557 ggcttgtatcatacatcattcaaggtgcctgatgtttatggggttttccagtttaaggtt 498
Query: 1209 gagta 1213
|||||
Sbjct: 497 gagta 493
>gb|DT521443.1|DT521443 WS02034.B21_E21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02034_E21 3', mRNA sequence
Length = 936
Score = 81.8 bits (41), Expect = 8e-014
Identities = 215/273 (78%)
Strand = Plus / Minus
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtg 1088
||||||||||| ||||||||||| |||| |||||| |||| ||||| || ||||||||
Sbjct: 669 tctgttgagatatatgaatggtctggaaagagctgggagccatatgtggccgatgatgtt 610
Query: 1089 cagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaag 1148
||| | || || | ||||||||||| || || ||||||| | || | |||||| |||
Sbjct: 609 caggtccagttctatatgatgagcccctatgtgttgaaaaccctatcaaatgacaagaag 550
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
|| |||||| ||| | ||||| || || ||||||||||| ||||||||||| || |||
Sbjct: 549 ggcttgtatcatacatcattcaaggtgcctgatgtttatggggttttccagtttaaggtt 490
Query: 1209 gagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcct 1268
||||| | || || ||||||||| | |||| | | || ||||||||||| || ||
Sbjct: 489 gagtataacaggcttggatatactagcctgttgctctccaaacagattccagttcggccc 430
Query: 1269 tacagacataatgagtatgagagattcataaca 1301
| |||||| ||||| ||||||||||| ||||||
Sbjct: 429 ttcagacacaatgaatatgagagatttataaca 397
>gb|CF228341.1|CF228341 PtaXM0011H11H1115 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 640
Score = 75.8 bits (38), Expect = 5e-012
Identities = 218/278 (78%)
Strand = Plus / Plus
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtg 1088
||||||||||| ||||||||||| |||| |||||| |||| ||||| || |||||||
Sbjct: 268 tctgttgagatatatgaatggtctggaaagagctgggagccatatgtggccaatgatgtt 327
Query: 1089 cagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaag 1148
||| | || || | ||||||||||| || || ||||||| | || | |||||| |||
Sbjct: 328 caggtccagttctatatgatgagcccctatgtgttgaaaaccctatcaaatgacaaaaag 387
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
|| |||||| ||| | ||||| || || ||||||||||| ||||||||||| || |||
Sbjct: 388 ggcttgtatcatacatcattcaaggtgcctgatgtttatggggttttccagtttaaggtt 447
Query: 1209 gagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcct 1268
||||| | || || ||||||||| | |||| | | || ||||||||||| || ||
Sbjct: 448 gagtataacaggcttggatatactagcctgttgctctccaaacagattccagttcggccc 507
Query: 1269 tacagacataatgagtatgagagattcataacatcagc 1306
| |||||| ||||| ||||||||||| |||||| ||||
Sbjct: 508 ttcagacacaatgaatatgagagatttataacagcagc 545
>gb|CK087304.1|CK087304 A002P49.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A002P49 3', mRNA sequence
Length = 622
Score = 75.8 bits (38), Expect = 5e-012
Identities = 218/278 (78%)
Strand = Plus / Minus
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtg 1088
||||||||||| ||||||||||| |||| |||||| |||| ||||| || |||||||
Sbjct: 570 tctgttgagatatatgaatggtctggaaagagctgggagccatatgtggccaatgatgtt 511
Query: 1089 cagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaag 1148
||| | || || | ||||||||||| || || ||||||| | || | |||||| |||
Sbjct: 510 caggtccagttctatatgatgagcccctatgtgttgaaaaccctatcaaatgacaaaaag 451
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
|| |||||| ||| | ||||| || || ||||||||||| ||||||||||| || |||
Sbjct: 450 ggcttgtatcatacatcattcaaggtgcctgatgtttatggggttttccagtttaaggtt 391
Query: 1209 gagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcct 1268
||||| | ||||| ||||||||| | |||| | | || ||||||||||| || ||
Sbjct: 390 gagtataacagacttggatatactagcctgttgctctccaaacagattccagttcggccc 331
Query: 1269 tacagacataatgagtatgagagattcataacatcagc 1306
| ||||| ||||| ||||||||||| |||||| ||||
Sbjct: 330 ttcagacccaatgaatatgagagatttataacagcagc 293
>gb|CK097522.1|CK097522 UB53CPD10.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB53CPD10 3', mRNA sequence
Length = 699
Score = 75.8 bits (38), Expect = 5e-012
Identities = 218/278 (78%)
Strand = Plus / Minus
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtg 1088
||||||||||| ||||||||||| |||| |||||| |||| ||||| || |||||||
Sbjct: 510 tctgttgagatatatgaatggtctggaaagagctgggagccatatgtggccaatgatgtt 451
Query: 1089 cagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaag 1148
||| | || || | ||||||||||| || || ||||||| | || | |||||| |||
Sbjct: 450 caggtccagttctatatgatgagcccatatgtgttgaaaaccctatcaaatgacaaaaag 391
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
|| |||||| ||| | ||||| || || ||||||||||| ||||||||||| || |||
Sbjct: 390 ggcttgtatcatacatcattcaaggtgcctgatgtttatggggttttccagtttaaggtt 331
Query: 1209 gagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcct 1268
||||| | || || ||||||||| | |||| | | || ||||||||||| || ||
Sbjct: 330 gagtataacaggcttggatatactagcctgttgctctccaaacagattccagttcggccc 271
Query: 1269 tacagacataatgagtatgagagattcataacatcagc 1306
| |||||| ||||| ||||||||||| |||||| ||||
Sbjct: 270 ttcagacacaatgaatatgagagatttataacagcagc 233
>gb|CX176286.1|CX176286 H12_69-75_16.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 668
Score = 69.9 bits (35), Expect = 3e-010
Identities = 241/310 (77%)
Strand = Plus / Plus
Query: 886 ctggaaacgagcaatttgtggcagagataagcaaatgggttttccatgagaggggacatc 945
|||| |||||||| |||||| | || | ||||||||||| ||||||| || || ||||
Sbjct: 359 ctggtaacgagcagtttgtgactgaacttagcaaatgggtcttccatgcaagaggtcatc 418
Query: 946 taaaggctgttaatgttaggcatcacaaggttggggagaccaatgaaccaggcatgtacc 1005
| |||||||| ||| |||| || ||||| | |||||| || |||| |||| |||||
Sbjct: 419 tgaaggctgtgaatcttagacaccacaaagctggggaaacagatgagccagcaatgtata 478
Query: 1006 gcattaatgatgacctggaatactctgttgagatctatgaatggtccggaacaagctgga 1065
| || || ||||| ||||| | ||||||||||| ||||||||||| |||| ||||||
Sbjct: 479 ggatcaaagatgatctggatttttctgttgagatatatgaatggtctggaaagagctggg 538
Query: 1066 agccgtatgttgctgatgatgtgcagcttcaatttttcatgatgagcccttacgttctga 1125
| || ||||| || ||||||| ||| | || | | ||||||||||||||| || |||
Sbjct: 539 aaccatatgtggccaatgatgtccaggtccagctntacatgatgagcccttatgtgttga 598
Query: 1126 aaactatgtcgactgacaacaagggtttgtattcaacaaccttcaaagttccagatgttt 1185
|||| | || | |||||| ||||| |||||| ||| | ||||| ||||| |||||||
Sbjct: 599 aaaccctatcaaatgacaagaagggcttgtatcatacatcattcaaggttcctgatgttt 658
Query: 1186 atggagtttt 1195
|||| |||||
Sbjct: 659 atggggtttt 668
>gb|BU886995.1|BU886995 R053C02 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 641
Score = 65.9 bits (33), Expect = 5e-009
Identities = 147/185 (79%)
Strand = Plus / Plus
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtg 1088
||||||||||| ||||||||||| |||| |||||| |||| ||||| || |||||||
Sbjct: 437 tctgttgagatatatgaatggtctggaaagagctgggagccctatgtggccaatgatgtt 496
Query: 1089 cagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaag 1148
||| | || || | ||||||||||| || || |||||||| | || | |||||| |||
Sbjct: 497 caggtccagttctatatgatgagcccctatgtgctgaaaaccctatcaaatgacaaaaag 556
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
|| |||||| ||| | ||||| || || |||||||| || ||||||||||| || |||
Sbjct: 557 ggcttgtatcatacatcattcaaggtgcctgatgtttacggggttttccagtttaaggtt 616
Query: 1209 gagta 1213
|||||
Sbjct: 617 gagta 621
>gb|CX178181.1|CX178181 C05_45-71_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 679
Score = 65.9 bits (33), Expect = 5e-009
Identities = 213/273 (78%)
Strand = Plus / Plus
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtg 1088
||||| ||||| ||||||||||| |||| |||||| |||| ||||| || ||||||||
Sbjct: 332 tctgtagagatatatgaatggtctggaaagagctgggagccatatgtggcagatgatgtt 391
Query: 1089 cagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaag 1148
||| | || || | ||||||||||| || || ||||||| | || | |||||| |||
Sbjct: 392 caggtccagttctatatgatgagcccctatgtgttgaaaaccctatcaaatgacaagaag 451
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
|| |||||| ||| | ||||| || || ||||||||||| ||||||||||| || |||
Sbjct: 452 ggcttgtatcatacatcattcaaggtgcctgatgtttatggggttttccagtttaaggtt 511
Query: 1209 gagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcct 1268
||||| | || || ||||||||| | |||| | | | ||||||||||| || ||
Sbjct: 512 gagtataacaggcttggatatactagcctgttgctctcccaacagattccagttcggccc 571
Query: 1269 tacagacataatgagtatgagagattcataaca 1301
| |||||| ||||| ||||||||||| ||||||
Sbjct: 572 ttcagacacaatgaatatgagagatttataaca 604
Score = 63.9 bits (32), Expect = 2e-008
Identities = 248/320 (77%)
Strand = Plus / Plus
Query: 894 gagcaatttgtggcagagataagcaaatgggttttccatgagaggggacatctaaaggct 953
|||||||||||| | || | ||||||||||| |||||||| || || ||||| ||||||
Sbjct: 197 gagcaatttgtgactgaacttagcaaatgggtcttccatgaaagaggtcatctgaaggct 256
Query: 954 gttaatgttaggcatcacaaggttggggagaccaatgaaccaggcatgtaccgcattaat 1013
|| ||| |||| || | || | |||||| || | || || | |||||| | || ||
Sbjct: 257 gtgaatcttagacacaataaagctggggaaacagacgagcctgcaatgtacaggatcaag 316
Query: 1014 gatgacctggaatactctgttgagatctatgaatggtccggaacaagctggaagccgtat 1073
||||| ||||| | ||||| ||||| ||||||||||| |||| |||||| |||| |||
Sbjct: 317 gatgatctggatttttctgtagagatatatgaatggtctggaaagagctgggagccatat 376
Query: 1074 gttgctgatgatgtgcagcttcaatttttcatgatgagcccttacgttctgaaaactatg 1133
|| || |||||||| ||| | || || | ||||||||||| || || ||||||| |
Sbjct: 377 gtggcagatgatgttcaggtccagttctatatgatgagcccctatgtgttgaaaacccta 436
Query: 1134 tcgactgacaacaagggtttgtattcaacaaccttcaaagttccagatgtttatggagtt 1193
|| | |||||| ||||| |||||| ||| | ||||| || || ||||||||||| |||
Sbjct: 437 tcaaatgacaagaagggcttgtatcatacatcattcaaggtgcctgatgtttatggggtt 496
Query: 1194 ttccagttcaaagttgagta 1213
|||||||| || ||||||||
Sbjct: 497 ttccagtttaaggttgagta 516
>gb|DT520714.1|DT520714 WS02448.B21_F10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_F10 3', mRNA sequence
Length = 688
Score = 63.9 bits (32), Expect = 2e-008
Identities = 148/184 (80%), Gaps = 2/184 (1%)
Strand = Plus / Minus
Query: 1031 tgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtgca 1090
||||||||| |||||||||| |||| |||||| |||| ||||| || |||||||| ||
Sbjct: 547 tgttgagatatatgaatggtttggaaagagctgggagccatatgtggccgatgatgttca 488
Query: 1091 gcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaaggg 1150
| | || |||| ||||||||||| || || ||||||| | || | |||||| |||||
Sbjct: 487 ggtccagttttatatgatgagcccctatgtgttgaaaaccctatcaaatgacaagaaggg 428
Query: 1151 tttgtattca-acaaccttcaaagttccagatgtttatggagttttccagttcaaagttg 1209
|||| |||| ||| | ||||| || || ||||||||||| ||||||||||| || ||||
Sbjct: 427 cttgt-ttcatacatcattcaaggtgcctgatgtttatggggttttccagtttaaggttg 369
Query: 1210 agta 1213
||||
Sbjct: 368 agta 365
Score = 46.1 bits (23), Expect = 0.005
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 894 gagcaatttgtggcagagataagcaaatgggttttccatgagaggggacatctaaaggct 953
|||||||||||| | || | ||||||||||| |||||||| || || ||||| ||||||
Sbjct: 684 gagcaatttgtgactgaacttagcaaatgggtcttccatgaaagaggtcatctgaaggct 625
Query: 954 gttaatgttag 964
|| ||| ||||
Sbjct: 624 gtgaatcttag 614
>gb|AI161556.1|AI161556 A002P49U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 505
Score = 61.9 bits (31), Expect = 8e-008
Identities = 209/267 (78%), Gaps = 1/267 (0%)
Strand = Plus / Plus
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgt-atgttgctgatgatgt 1087
||||||||||| ||||||||||| |||| |||||| |||| | |||| || |||||||
Sbjct: 120 tctgttgagatatatgaatggtctggaaagagctgggagccattatgtggccaatgatgt 179
Query: 1088 gcagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaa 1147
||| | || || | ||||||||||| || || ||||||| | || | |||||| ||
Sbjct: 180 tcaggtccagttctatatgatgagcccctatgtgttgaaaaccctatcaaatgacaaaaa 239
Query: 1148 gggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagt 1207
||| |||||| ||| | ||||| || || ||||||||||| ||||||||||| || ||
Sbjct: 240 gggcttgtatcatacatcattcaaggtgcctgatgtttatggggttttccagtttaaggt 299
Query: 1208 tgagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcc 1267
|||||| | ||||| ||||||||| | |||| | | || ||||||||||| || ||
Sbjct: 300 tgagtataacagacttggatatactagcctgttgctctccaaacagattccagttcggcc 359
Query: 1268 ttacagacataatgagtatgagagatt 1294
| |||||| ||||| |||||||||||
Sbjct: 360 cttcagacacaatgaatatgagagatt 386
>gb|AJ770253.1|AJ770253 AJ770253 Populus euphratica leaf 3-6 months, adult Populus euphratica
cDNA clone P0001100009D11F1, mRNA sequence
Length = 230
Score = 61.9 bits (31), Expect = 8e-008
Identities = 100/123 (81%)
Strand = Plus / Plus
Query: 1179 gatgtttatggagttttccagttcaaagttgagtaccaaagactgggatatactggtctg 1238
||||||||||| ||||||||||| || |||||||| | || || ||||||||| | |||
Sbjct: 35 gatgtttatggggttttccagtttaaggttgagtataacaggcttggatatactagcctg 94
Query: 1239 tcttttacaaagcagattccagtacgtccttacagacataatgagtatgagagattcata 1298
| | | || ||||||||||| ||||| | |||||| ||||| ||||||||||| |||
Sbjct: 95 ttgctctccaaacagattccagttcgtcccttcagacacaatgaatatgagagatttata 154
Query: 1299 aca 1301
|||
Sbjct: 155 aca 157
>gb|BU823520.1|BU823520 UB53CPD10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 607
Score = 58.0 bits (29), Expect = 1e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 462 tgtggggttgattttgatgaggatccagaggcaatggttattgaccata 510
||||||||||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 469 tgtggggttgattttgatgaggatccatcggctctggttattgatcata 517
>gb|CA927708.1|CA927708 MTU6TR.P12.A10 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 543
Score = 58.0 bits (29), Expect = 1e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 462 tgtggggttgattttgatgaggatccagaggcaatggttattgaccata 510
||||||||||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 387 tgtggggttgattttgatgaggatccatcggctctggttattgatcata 339
>gb|CA928923.1|CA928923 MTU6TR.P8.D10 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 543
Score = 58.0 bits (29), Expect = 1e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 462 tgtggggttgattttgatgaggatccagaggcaatggttattgaccata 510
||||||||||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 387 tgtggggttgattttgatgaggatccatcggctctggttattgatcata 339
>gb|BU873282.1|BU873282 Q053D02 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 498
Score = 56.0 bits (28), Expect = 5e-006
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 1179 gatgtttatggagttttccagttcaaagttgagtaccaaagactgggatatactggtctg 1238
||||||||||| ||||||||||| || |||||||| | || || ||||||||| | |||
Sbjct: 14 gatgtttatggggttttccagtttaaggttgagtataacaggcttggatatactagcctg 73
Query: 1239 tcttttacaaagcagattccagtacgtccttacagacataatgagtatgagagattcata 1298
| | | || ||||||||||| || || | |||||| ||||| ||||||||||| |||
Sbjct: 74 ttgctctccaaacagattccagttcggcccttcagacacaatgaatatgagagatttata 133
Query: 1299 acatcagc 1306
||| ||||
Sbjct: 134 acagcagc 141
>gb|CF234107.1|CF234107 PtaJXO2F2F0212 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 576
Score = 54.0 bits (27), Expect = 2e-005
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 462 tgtggggttgattttgatgaggatccagaggcaatggttattgaccata 510
|||||||||||||| |||||||||||| ||| |||||||||| ||||
Sbjct: 456 tgtggggttgatttngatgaggatccatcggctctggttattgancata 504
>gb|CK107320.1|CK107320 UB53CPD10.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB53CPD10 5', mRNA sequence
Length = 618
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 462 tgtggggttgattttgatgaggatcca 488
|||||||||||||||||||||||||||
Sbjct: 461 tgtggggttgattttgatgaggatcca 487
>gb|BP931843.1|BP931843 BP931843 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-028_O02.r 3', mRNA sequence
Length = 501
Score = 54.0 bits (27), Expect = 2e-005
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 1179 gatgtttatggagttttccagttcaaagttgagtaccaaagactgggatatactggtctg 1238
||||||||||| ||||||||||| || |||||||| | || || ||||||||| | |||
Sbjct: 465 gatgtttatggggttttccagtttaaggttgagtataacaggcttggatatactagcctg 406
Query: 1239 tcttttacaaagcagattccagtacgtccttacagacataatgagtatgagagattcata 1298
| | | || ||||||||||| || || | |||||| ||||| ||||||||||| |||
Sbjct: 405 ttgctctccaaacagattccagttcggcccttcagacacaatgaatatgagagatttata 346
Query: 1299 aca 1301
|||
Sbjct: 345 aca 343
>gb|DT509624.1|DT509624 WS02424.BR_E01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_E01 5', mRNA sequence
Length = 538
Score = 54.0 bits (27), Expect = 2e-005
Identities = 99/123 (80%)
Strand = Plus / Plus
Query: 1179 gatgtttatggagttttccagttcaaagttgagtaccaaagactgggatatactggtctg 1238
||||||||||| ||||||||||| || |||||||| | || || ||||||||| | |||
Sbjct: 36 gatgtttatggggttttccagtttaaggttgagtataacaggcttggatatactagcctg 95
Query: 1239 tcttttacaaagcagattccagtacgtccttacagacataatgagtatgagagattcata 1298
| | | || ||||||||||| || || | |||||| ||||| ||||||||||| |||
Sbjct: 96 ttgctctccaaacagattccagttcggcccttcagacacaatgaatatgagagatttata 155
Query: 1299 aca 1301
|||
Sbjct: 156 aca 158
>gb|CV239059.1|CV239059 WS0231.B21_D05 PT-MB-A-13 Populus trichocarpa cDNA clone WS0231_D05
3', mRNA sequence
Length = 593
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 465 ggggttgattttgatgaggatccagaggcaatggttattgaccata 510
|||||||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 146 ggggttgattttgatgaggatccatcggctctggttattgatcata 101
>gb|CV241896.1|CV241896 WS02513.B21_I23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02513_I23 3', mRNA sequence
Length = 579
Score = 52.0 bits (26), Expect = 7e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 252 gacttccgcctcgctgacgatcccaagctctcgctccaccgctacggcca 301
|||||| | ||||||||||||||||| ||||| ||||| ||||| |||||
Sbjct: 452 gacttcagactcgctgacgatcccaaactctcactccaacgctaaggcca 403
>gb|DT520134.1|DT520134 WS02446.B21.1_K22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02446_K22 3', mRNA sequence
Length = 599
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 465 ggggttgattttgatgaggatccagaggcaatggttattgaccata 510
|||||||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 145 ggggttgattttgatgaggatccatcggctctggttattgatcata 100
>gb|CV242652.1|CV242652 WS02515.B21_K14 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_K14 3', mRNA sequence
Length = 623
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 462 tgtggggttgattttgatgaggatccagaggcaatggttattgaccata 510
|||||||||||||| |||||||||||| || |||||||||||||||
Sbjct: 149 tgtggggttgatttcgatgaggatccatctgccttggttattgaccata 101
>gb|CV259447.1|CV259447 WS02011.B21_G05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_G05 3', mRNA sequence
Length = 627
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 462 tgtggggttgattttgatgaggatccagaggcaatggttattgaccata 510
|||||||||||||| |||||||||||| || |||||||||||||||
Sbjct: 148 tgtggggttgatttcgatgaggatccatctgccttggttattgaccata 100
>gb|CX170045.1|CX170045 G01_69-106_13.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 695
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 462 tgtggggttgattttgatgaggatccagaggcaatggttattgaccata 510
|||||||||||||| |||||||||||| || |||||||||||||||
Sbjct: 497 tgtggggttgatttcgatgaggatccatctgccttggttattgaccata 545
>gb|CX179219.1|CX179219 A03_45-73_01.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 606
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 462 tgtggggttgattttgatgaggatccagaggcaatggttattgaccata 510
|||||||||||||| |||||||||||| || |||||||||||||||
Sbjct: 506 tgtggggttgatttcgatgaggatccatctgccttggttattgaccata 554
>gb|CX179431.1|CX179431 F05_45-20_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 641
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 462 tgtggggttgattttgatgaggatccagaggcaatggttattgaccata 510
|||||||||||||| |||||||||||| || |||||||||||||||
Sbjct: 507 tgtggggttgatttcgatgaggatccatctgccttggttattgaccata 555
>gb|CX179975.1|CX179975 G01_45-56_13.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 656
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 462 tgtggggttgattttgatgaggatccagaggcaatggttattgaccata 510
|||||||||||||| |||||||||||| || |||||||||||||||
Sbjct: 526 tgtggggttgatttcgatgaggatccatctgccttggttattgaccata 574
>gb|CX185452.1|CX185452 B04_45-58_04.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 661
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 462 tgtggggttgattttgatgaggatccagaggcaatggttattgaccata 510
|||||||||||||| |||||||||||| || |||||||||||||||
Sbjct: 481 tgtggggttgatttcgatgaggatccatctgccttggttattgaccata 529
>gb|DT483652.1|DT483652 WS02523.B21_D04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02523_D04 3', mRNA sequence
Length = 891
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 462 tgtggggttgattttgatgaggatccagaggcaatggttattgaccata 510
|||||||||||||| |||||||||||| || |||||||||||||||
Sbjct: 149 tgtggggttgatttcgatgaggatccatctgccttggttattgaccata 101
>gb|DT495226.1|DT495226 WS0112.BR_M13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_M13
5', mRNA sequence
Length = 593
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 462 tgtggggttgattttgatgaggatccagaggcaatggttattgaccata 510
|||||||||||||| |||||||||||| || |||||||||||||||
Sbjct: 463 tgtggggttgatttcgatgaggatccatctgccttggttattgaccata 511
>gb|DT510501.1|DT510501 WS02426.BR_L16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_L16 5', mRNA sequence
Length = 633
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 462 tgtggggttgattttgatgaggatccagaggcaatggttattgaccata 510
|||||||||||||| |||||||||||| || |||||||||||||||
Sbjct: 505 tgtggggttgatttcgatgaggatccatctgccttggttattgaccata 553
>gb|CX185938.1|CX185938 A04_45-95_02.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 636
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 465 ggggttgattttgatgaggatcca 488
||||||||||||||||||||||||
Sbjct: 433 ggggttgattttgatgaggatcca 456
>gb|BP924145.1|BP924145 BP924145 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-028_O02.f 5', mRNA sequence
Length = 573
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 465 ggggttgattttgatgaggatcca 488
||||||||||||||||||||||||
Sbjct: 535 ggggttgattttgatgaggatcca 558
>gb|CA932212.1|CA932212 MTU5CS.P10.A10 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 542
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 462 tgtggggttgattttgatgaggatcca 488
|||||||||||||| ||||||||||||
Sbjct: 157 tgtggggttgatttcgatgaggatcca 183
>gb|CA932236.1|CA932236 MTU5CS.P10.D08 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 542
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 462 tgtggggttgattttgatgaggatcca 488
|||||||||||||| ||||||||||||
Sbjct: 157 tgtggggttgatttcgatgaggatcca 183
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 180,089
Number of Sequences: 369679
Number of extensions: 180089
Number of successful extensions: 46806
Number of sequences better than 0.5: 65
Number of HSP's better than 0.5 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46637
Number of HSP's gapped (non-prelim): 141
length of query: 1775
length of database: 203,408,664
effective HSP length: 20
effective length of query: 1755
effective length of database: 196,015,084
effective search space: 344006472420
effective search space used: 344006472420
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)