BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.170
(744 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN520738.1|CN520738 GQ0108.B3_L05 GQ010 Populus trichoca... 76 2e-012
gb|CV240638.1|CV240638 WS0251.B21_O23 PT-MB-N-A-15 Populus ... 76 2e-012
gb|DT469311.1|DT469311 WS01917.C21_G04 PT-DX-N-A-10 Populus... 76 2e-012
gb|CV246013.1|CV246013 WS0259.B21_P22 PT-MB-N-A-15 Populus ... 58 5e-007
gb|BU832929.1|BU832929 T039H07 Populus apical shoot cDNA li... 54 8e-006
gb|BU835584.1|BU835584 T075G07 Populus apical shoot cDNA li... 54 8e-006
gb|CA823228.1|CA823228 R22G04 two-month-old roots from clon... 54 8e-006
gb|BI071046.1|BI071046 C051P38U Populus strain T89 leaves P... 40 0.12
gb|BU813306.1|BU813306 N007G09 Populus bark cDNA library Po... 40 0.12
gb|BU825132.1|BU825132 UK104TB05 Populus apical shoot cDNA ... 40 0.12
gb|BU825911.1|BU825911 UK114TE07 Populus apical shoot cDNA ... 40 0.12
gb|BU827838.1|BU827838 K009P88P Populus apical shoot cDNA l... 40 0.12
gb|BU833600.1|BU833600 T050B11 Populus apical shoot cDNA li... 40 0.12
gb|BU837047.1|BU837047 T094A08 Populus apical shoot cDNA li... 40 0.12
gb|BU863297.1|BU863297 S026D07 Populus imbibed seed cDNA li... 40 0.12
gb|CA927469.1|CA927469 MTU6CR.P9.D09 Aspen root cDNA Librar... 40 0.12
gb|CK088214.1|CK088214 A044P04.3pR Hybrid aspen plasmid lib... 40 0.12
gb|CK092618.1|CK092618 G089P48.3pR Populus tension wood cDN... 40 0.12
gb|CV236796.1|CV236796 WS01225.B21.1_H17 PT-GT-FL-A-3 Popul... 40 0.12
gb|CV237615.1|CV237615 WS0123.B21_H12 PT-GT-FL-A-3 Populus ... 40 0.12
gb|CV253534.1|CV253534 WS0222.B21_D20 PTxD-ICC-A-12 Populus... 40 0.12
gb|CV259591.1|CV259591 WS02011.B21_M05 PTxN-IB-N-A-11 Popul... 40 0.12
gb|CV283374.1|CV283374 WS0187.B21_C17 PTxD-IL-N-A-9 Populus... 40 0.12
gb|CX657353.1|CX657353 PO02043A07 Poplar SC cDNA library Po... 40 0.12
gb|DT469540.1|DT469540 WS01918.C21_B15 PT-DX-N-A-10 Populus... 40 0.12
gb|DT476453.1|DT476453 WS01229.B21_K10 PT-GT-FL-A-3 Populus... 40 0.12
gb|DT486280.1|DT486280 WS02530.B21_I13 PT-MB-N-A-15 Populus... 40 0.12
gb|DT490268.1|DT490268 WS02544.B21_H23 PT-MB-N-A-15 Populus... 40 0.12
gb|DT515144.1|DT515144 WS02426.B21_M06 PTxD-ICC-N-A-14 Popu... 40 0.12
gb|DT518097.1|DT518097 WS02436.B21_D02 PTxD-ICC-N-A-14 Popu... 40 0.12
gb|DT524493.1|DT524493 WS02042.C21.1_M21 PTxN-IB-N-A-11 Pop... 40 0.12
gb|DT524822.1|DT524822 WS02043.C21_L01 PTxN-IB-N-A-11 Popul... 40 0.12
>gb|CN520738.1|CN520738 GQ0108.B3_L05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_L05 5', mRNA sequence
Length = 554
Score = 75.8 bits (38), Expect = 2e-012
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 137 ttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 196
|||||||||||||||||||| |||||||| |||||||||||||| || || ||||| |||
Sbjct: 68 ttctacatgtgtgcacatgcagggatgataggaacaacaaggccaacacattatcacgtt 127
Query: 197 ct 198
||
Sbjct: 128 ct 129
Score = 38.2 bits (19), Expect = 0.46
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 74 ccagacaatgttcttcctggaac 96
||||||||||||| |||||||||
Sbjct: 5 ccagacaatgttcctcctggaac 27
>gb|CV240638.1|CV240638 WS0251.B21_O23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_O23 3', mRNA sequence
Length = 872
Score = 75.8 bits (38), Expect = 2e-012
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 137 ttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 196
|||||||||||||||||||| |||||||| |||||||||||||| || || ||||| |||
Sbjct: 555 ttctacatgtgtgcacatgcagggatgataggaacaacaaggccaacacattatcacgtt 496
Query: 197 ct 198
||
Sbjct: 495 ct 494
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 5 tggtcacccaagttcactgtgattgttgc 33
|||||||||||||||||||| ||||||||
Sbjct: 769 tggtcacccaagttcactgttattgttgc 741
>gb|DT469311.1|DT469311 WS01917.C21_G04 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01917_G04 3', mRNA sequence
Length = 809
Score = 75.8 bits (38), Expect = 2e-012
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 137 ttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 196
|||||||||||||||||||| |||||||| |||||||||||||| || || ||||| |||
Sbjct: 540 ttctacatgtgtgcacatgcagggatgataggaacaacaaggccaacacattatcacgtt 481
Query: 197 ct 198
||
Sbjct: 480 ct 479
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 5 tggtcacccaagttcactgtgattgttgc 33
|||||||||||||||||||| ||||||||
Sbjct: 672 tggtcacccaagttcactgttattgttgc 644
>gb|CV246013.1|CV246013 WS0259.B21_P22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0259_P22 3', mRNA sequence
Length = 744
Score = 58.0 bits (29), Expect = 5e-007
Identities = 137/173 (79%)
Strand = Plus / Minus
Query: 146 tgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgac 205
||||| ||||||||||||||||| || |||||||| || ||||| |||||| || |||
Sbjct: 656 tgtgctcatgctgggatgattgggactacaaggcctactcactaccatgttttgttagac 597
Query: 206 gagataggtttcaatgccgacgagatgcaggagtttgttcattcgctctcttacgtgtac 265
||| | ||||| || || || ||||||| |||| ||||| ||||| || || |||
Sbjct: 596 gaggttggtttttcagcagatgatctgcaggaacttgtgcattccctctcatatgtatac 537
Query: 266 cagaggagcacgacagccatctcagtggttgctccagtgtgctacgcccacct 318
|| || |||||||| |||||||| || ||||| ||| | ||||| ||||||||
Sbjct: 536 caaagaagcacgactgccatctctgtagttgcaccaatctgctatgcccacct 484
>gb|BU832929.1|BU832929 T039H07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 563
Score = 54.0 bits (27), Expect = 8e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 146 tgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 196
||||| ||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 103 tgtgctcatgctgggatgattgggactacaaggcctactcactaccatgtt 153
>gb|BU835584.1|BU835584 T075G07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 574
Score = 54.0 bits (27), Expect = 8e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 146 tgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 196
||||| ||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 175 tgtgctcatgctgggatgattgggactacaaggcctactcactaccatgtt 225
>gb|CA823228.1|CA823228 R22G04 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 659
Score = 54.0 bits (27), Expect = 8e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 146 tgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 196
||||| ||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 461 tgtgctcatgctgggatgattgggactacaaggcctactcactaccatgtt 511
>gb|BI071046.1|BI071046 C051P38U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 414
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 147 caggaatgaaacgagccaag 166
>gb|BU813306.1|BU813306 N007G09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 519
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 87 caggaatgaaacgagccaag 106
>gb|BU825132.1|BU825132 UK104TB05 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 564
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 498 caggaatgaaacgagccaag 517
>gb|BU825911.1|BU825911 UK114TE07 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 570
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 474 caggaatgaaacgagccaag 493
>gb|BU827838.1|BU827838 K009P88P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 465
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 39 caggaatgaaacgagccaag 58
>gb|BU833600.1|BU833600 T050B11 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 498
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 92 caggaatgaaacgagccaag 111
>gb|BU837047.1|BU837047 T094A08 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 255 caggaatgaaacgagccaag 274
>gb|BU863297.1|BU863297 S026D07 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 444
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 321 caggaatgaaacgagccaag 340
>gb|CA927469.1|CA927469 MTU6CR.P9.D09 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 496
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 66 caggaatgaaacgagccaag 85
>gb|CK088214.1|CK088214 A044P04.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A044P04 3', mRNA sequence
Length = 602
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 432 caggaatgaaacgagccaag 413
>gb|CK092618.1|CK092618 G089P48.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G089P48 3', mRNA sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 387 caggaatgaaacgagccaag 368
>gb|CV236796.1|CV236796 WS01225.B21.1_H17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_H17 3', mRNA sequence
Length = 882
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 428 caggaatgaaacgagccaag 409
>gb|CV237615.1|CV237615 WS0123.B21_H12 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0123_H12 3', mRNA sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 416 caggaatgaaacgagccaag 397
>gb|CV253534.1|CV253534 WS0222.B21_D20 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0222_D20 3', mRNA sequence
Length = 720
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 423 caggaatgaaacgagccaag 404
>gb|CV259591.1|CV259591 WS02011.B21_M05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_M05 3', mRNA sequence
Length = 782
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 352 caggaatgaaacgagccaag 333
>gb|CV283374.1|CV283374 WS0187.B21_C17 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0187_C17 3', mRNA sequence
Length = 750
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 425 caggaatgaaacgagccaag 406
>gb|CX657353.1|CX657353 PO02043A07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02043A07 5', mRNA sequence
Length = 369
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 173 caggaatgaaacgagccaag 192
>gb|DT469540.1|DT469540 WS01918.C21_B15 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_B15 3', mRNA sequence
Length = 502
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 427 caggaatgaaacgagccaag 408
>gb|DT476453.1|DT476453 WS01229.B21_K10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_K10 3', mRNA sequence
Length = 874
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 416 caggaatgaaacgagccaag 397
>gb|DT486280.1|DT486280 WS02530.B21_I13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_I13 3', mRNA sequence
Length = 791
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 359 caggaatgaaacgagccaag 340
>gb|DT490268.1|DT490268 WS02544.B21_H23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02544_H23 3', mRNA sequence
Length = 636
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 426 caggaatgaaacgagccaag 407
>gb|DT515144.1|DT515144 WS02426.B21_M06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_M06 3', mRNA sequence
Length = 880
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 392 caggaatgaaacgagccaag 373
>gb|DT518097.1|DT518097 WS02436.B21_D02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_D02 3', mRNA sequence
Length = 891
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 425 caggaatgaaacgagccaag 406
>gb|DT524493.1|DT524493 WS02042.C21.1_M21 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02042_M21 3', mRNA sequence
Length = 814
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 430 caggaatgaaacgagccaag 411
>gb|DT524822.1|DT524822 WS02043.C21_L01 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02043_L01 3', mRNA sequence
Length = 642
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 563 caggaatgaaacgagccaag 582
||||||||||||||||||||
Sbjct: 374 caggaatgaaacgagccaag 355
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 81,433
Number of Sequences: 369679
Number of extensions: 81433
Number of successful extensions: 20904
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20864
Number of HSP's gapped (non-prelim): 40
length of query: 744
length of database: 203,408,664
effective HSP length: 19
effective length of query: 725
effective length of database: 196,384,763
effective search space: 142378953175
effective search space used: 142378953175
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)